Wall clock time and date at job start Wed Apr 1 2020 00:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47041 * 2 1 4 4 H 1.09000 * 109.47092 * 305.63566 * 3 2 1 5 5 C 1.53005 * 109.46550 * 65.63420 * 3 2 1 6 6 N 1.46509 * 109.46571 * 175.00005 * 5 3 2 7 7 C 1.34777 * 119.99365 * 180.02562 * 6 5 3 8 8 O 1.21271 * 120.00430 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99307 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.46512 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47938 * 304.99766 * 10 9 7 12 12 C 1.53100 * 109.47648 * 184.97685 * 10 9 7 13 13 C 1.53174 * 109.16076 * 182.41144 * 12 10 9 14 14 C 1.53171 * 109.03964 * 56.98230 * 13 12 10 15 15 C 1.53098 * 109.16146 * 303.01793 * 14 13 12 16 16 O 1.42899 * 109.42419 * 57.60392 * 15 14 13 17 17 N 1.46893 * 109.47190 * 185.63270 * 3 2 1 18 18 C 1.46894 * 111.00088 * 86.61711 * 17 3 2 19 19 C 1.50699 * 109.47505 * 185.21873 * 18 17 3 20 20 O 1.21293 * 120.00135 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00272 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00134 * 180.02562 * 21 19 18 23 23 H 1.08008 * 120.00230 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00129 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99922 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99999 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47139 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47044 * 120.00091 * 26 24 22 29 29 H 1.48497 * 109.47160 * 240.00156 * 26 24 22 30 30 H 1.09005 * 109.47236 * 174.18916 * 1 2 3 31 31 H 1.09005 * 109.47223 * 294.18849 * 1 2 3 32 32 H 1.08996 * 109.47544 * 54.18545 * 1 2 3 33 33 H 1.09004 * 109.47177 * 240.00726 * 2 1 3 34 34 H 1.08994 * 109.47571 * 120.00129 * 2 1 3 35 35 H 1.08997 * 109.47117 * 294.99521 * 5 3 2 36 36 H 1.08995 * 109.47242 * 55.00190 * 5 3 2 37 37 H 0.96997 * 120.00114 * 0.02562 * 6 5 3 38 38 H 1.08997 * 109.47037 * 299.99495 * 9 7 6 39 39 H 1.08995 * 109.47213 * 60.00097 * 9 7 6 40 40 H 1.09000 * 109.52023 * 302.31496 * 12 10 9 41 41 H 1.08997 * 109.51991 * 62.50061 * 12 10 9 42 42 H 1.08999 * 109.54172 * 176.84779 * 13 12 10 43 43 H 1.09003 * 109.54164 * 297.10847 * 13 12 10 44 44 H 1.08989 * 109.52567 * 62.92129 * 14 13 12 45 45 H 1.09001 * 109.52431 * 183.11707 * 14 13 12 46 46 H 1.09001 * 109.48314 * 177.59699 * 15 14 13 47 47 H 1.09004 * 109.47808 * 297.61312 * 15 14 13 48 48 H 1.00903 * 111.00415 * 210.57146 * 17 3 2 49 49 H 1.09004 * 109.47334 * 305.21546 * 18 17 3 50 50 H 1.09000 * 109.47645 * 65.21778 * 18 17 3 51 51 H 0.96998 * 119.99832 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5966 1.9847 -0.8352 5 6 1.6488 2.1217 1.3141 6 7 2.2382 3.4620 1.3654 7 6 2.0272 4.2502 2.4381 8 8 1.3499 3.8499 3.3609 9 6 2.6339 5.6287 2.4910 10 6 2.2427 6.3079 3.8051 11 1 1.1574 6.3066 3.9058 12 6 2.7539 7.7510 3.8058 13 6 2.4112 8.4051 5.1478 14 6 3.0204 7.5720 6.2797 15 6 2.4989 6.1358 6.1834 16 8 2.8238 5.5973 4.9003 17 7 3.5026 1.4448 -0.1359 18 6 3.9000 1.4096 -1.5497 19 6 5.3985 1.2837 -1.6473 20 8 6.0696 1.2292 -0.6385 21 7 5.9932 1.2327 -2.8558 22 6 7.3564 1.1176 -2.9446 23 1 7.9540 1.0683 -2.0462 24 6 7.9695 1.0645 -4.1905 25 7 7.2425 1.1240 -5.2835 26 14 9.8271 0.9085 -4.3115 27 1 10.4098 0.8608 -2.9464 28 1 10.1726 -0.3383 -5.0404 29 1 10.3754 2.0782 -5.0437 30 1 -0.3634 -1.0224 -0.1040 31 1 -0.3634 0.4211 0.9375 32 1 -0.3634 0.6013 -0.8333 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.5632 2.1996 1.3737 36 1 2.0172 1.5304 2.1524 37 1 2.7802 3.7820 0.6274 38 1 3.7194 5.5504 2.4313 39 1 2.2656 6.2203 1.6530 40 1 3.8347 7.7546 3.6643 41 1 2.2779 8.3064 2.9977 42 1 2.8213 9.4145 5.1767 43 1 1.3285 8.4464 5.2674 44 1 4.1064 7.5720 6.1882 45 1 2.7348 7.9995 7.2409 46 1 2.9620 5.5280 6.9607 47 1 1.4169 6.1324 6.3157 48 1 3.9082 2.2403 0.3339 49 1 3.4311 0.5551 -2.0377 50 1 3.5799 2.3288 -2.0402 51 1 5.4566 1.2766 -3.6626 52 1 7.6705 1.0873 -6.1533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715052285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:27 Heat of formation + Delta-G solvation = -139.203846 kcal Electronic energy + Delta-G solvation = -29951.371388 eV Core-core repulsion = 25756.946887 eV Total energy + Delta-G solvation = -4194.424501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.24991 -39.20976 -38.38220 -37.19327 -34.11236 -33.88766 -33.78940 -33.08616 -32.60441 -31.20967 -29.29986 -27.92675 -26.03731 -24.74768 -24.11531 -23.61449 -22.70482 -20.57939 -20.52838 -20.13757 -19.29698 -17.93427 -17.24384 -16.76033 -16.63520 -16.08945 -15.84525 -15.50993 -15.30496 -14.84488 -14.79885 -14.67307 -14.50045 -14.23421 -13.92357 -13.62720 -13.50031 -13.41872 -13.12002 -12.89584 -12.75000 -12.49928 -12.40374 -12.08868 -11.84882 -11.68219 -11.54960 -11.52966 -11.37750 -11.34761 -11.16639 -11.07355 -11.04673 -10.58391 -10.56328 -10.35133 -10.23400 -9.87657 -9.57557 -9.53036 -9.13095 -8.49540 -8.09674 -7.97283 -6.43108 -3.83755 2.62486 3.04655 3.15444 3.26254 3.33618 3.57292 3.89030 4.02283 4.26148 4.37230 4.43244 4.52621 4.59528 4.66006 4.79982 4.90491 4.92142 4.99447 5.12770 5.14696 5.19163 5.19529 5.23940 5.31041 5.35565 5.39669 5.44274 5.47987 5.55757 5.57852 5.61954 5.70950 5.72330 5.74611 5.79667 5.87183 5.89626 5.98093 6.02802 6.16306 6.20509 6.30202 6.41306 7.09336 7.15283 7.37287 7.54354 7.57088 8.05346 8.17472 8.60136 9.17091 9.53080 10.04711 10.74683 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.002236 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.560548 B =12516.679374 C =14683.963328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C 0.077 3.923 4 H 0.049 0.951 5 C 0.118 3.882 6 N -0.735 5.735 7 C 0.518 3.482 8 O -0.530 6.530 9 C -0.139 4.139 10 C 0.108 3.892 11 H 0.064 0.936 12 C -0.153 4.153 13 C -0.121 4.121 14 C -0.158 4.158 15 C 0.064 3.936 16 O -0.365 6.365 17 N -0.664 5.664 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.580 6.580 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.398 0.602 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.092 0.908 47 H 0.048 0.952 48 H 0.347 0.653 49 H 0.087 0.913 50 H 0.043 0.957 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.581 12.082 13.739 24.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.034 4.034 4 H 0.067 0.933 5 C -0.005 4.005 6 N -0.389 5.389 7 C 0.304 3.696 8 O -0.405 6.405 9 C -0.179 4.179 10 C 0.050 3.950 11 H 0.082 0.918 12 C -0.191 4.191 13 C -0.159 4.159 14 C -0.196 4.196 15 C -0.013 4.013 16 O -0.284 6.284 17 N -0.298 5.298 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.464 6.464 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.110 0.890 47 H 0.067 0.933 48 H 0.168 0.832 49 H 0.106 0.894 50 H 0.061 0.939 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.375 10.907 14.964 24.068 hybrid contribution 0.564 1.222 -1.426 1.960 sum -14.811 12.129 13.538 23.447 Atomic orbital electron populations 1.21842 0.95933 1.01792 1.01666 1.21487 0.94640 0.95293 1.03543 1.21850 0.88956 0.96831 0.95733 0.93307 1.21620 0.98324 0.82271 0.98317 1.46089 1.54461 1.16774 1.21570 1.20455 0.80537 0.86945 0.81653 1.90703 1.38967 1.74853 1.36008 1.21773 1.03853 0.94020 0.98234 1.21725 0.97273 0.89884 0.86141 0.91785 1.22251 1.02619 0.96074 0.98132 1.21565 1.00849 0.99070 0.94407 1.22226 1.01725 0.96626 0.99032 1.22505 0.99371 0.93620 0.85831 1.88007 1.73098 1.53862 1.13434 1.60007 1.06536 1.50274 1.13011 1.21749 0.96118 1.01084 0.89341 1.19802 0.88512 0.84628 0.84487 1.90539 1.65170 1.55184 1.35469 1.41875 1.07942 1.64105 1.06236 1.19751 0.82040 1.46931 0.94011 0.87877 1.25262 1.00550 0.97396 0.94793 1.69617 1.36183 1.50674 0.97886 0.85806 0.82287 0.77737 0.78565 1.19204 1.20749 1.20780 0.92513 0.92638 0.92875 0.91192 0.90895 0.90818 0.90444 0.76749 0.87634 0.87542 0.90708 0.90764 0.91442 0.91853 0.90999 0.91038 0.89011 0.93331 0.83179 0.89440 0.93900 0.77513 0.91942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.54 37.16 0.35 -1.06 16 2 C -0.11 -1.26 5.65 -26.73 -0.15 -1.41 16 3 C 0.08 0.90 2.27 -67.71 -0.15 0.75 16 4 H 0.05 0.53 7.83 -51.93 -0.41 0.12 16 5 C 0.12 1.38 4.95 -4.03 -0.02 1.36 16 6 N -0.74 -8.16 4.97 -60.29 -0.30 -8.46 16 7 C 0.52 6.40 7.71 -10.98 -0.08 6.31 16 8 O -0.53 -8.47 15.42 -8.85 -0.14 -8.61 16 9 C -0.14 -1.28 5.41 -27.88 -0.15 -1.43 16 10 C 0.11 1.07 2.19 -26.68 -0.06 1.01 16 11 H 0.06 0.67 7.96 -51.93 -0.41 0.26 16 12 C -0.15 -1.14 5.42 -26.59 -0.14 -1.28 16 13 C -0.12 -0.83 6.03 -26.55 -0.16 -0.99 16 14 C -0.16 -1.16 6.14 -26.59 -0.16 -1.32 16 15 C 0.06 0.60 6.84 37.21 0.25 0.85 16 16 O -0.37 -4.51 9.64 -49.65 -0.48 -4.99 16 17 N -0.66 -10.23 5.84 -107.99 -0.63 -10.86 16 18 C 0.05 0.83 5.93 -4.98 -0.03 0.80 16 19 C 0.44 10.17 7.83 -10.98 -0.09 10.09 16 20 O -0.58 -15.62 15.89 5.55 0.09 -15.53 16 21 N -0.56 -14.06 5.29 -10.96 -0.06 -14.11 16 22 C -0.30 -8.23 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -24.29 13.05 55.50 0.72 -23.57 16 26 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.49 6.99 -51.93 -0.36 0.12 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.85 7.41 -51.93 -0.38 0.47 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.82 6.97 -51.93 -0.36 0.45 16 36 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.40 3.84 7.40 -40.82 -0.30 3.53 16 38 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.35 5.44 6.61 -39.29 -0.26 5.18 16 49 H 0.09 1.37 7.38 -51.93 -0.38 0.99 16 50 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 51 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 52 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 416.10 15.07 6.27 6.27 Total: -1.00 -34.00 416.10 -9.43 -43.43 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -9.05 Total: 14.73 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: -0.83 Total: 5.79 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.26 Total: -57.00 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -0.53 Total: -29.12 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.00 -9.43 -43.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715052285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.776 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds