Wall clock time and date at job start Wed Apr 1 2020 00:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47041 * 2 1 4 4 H 1.09000 * 109.47092 * 305.63566 * 3 2 1 5 5 C 1.53005 * 109.46550 * 65.63420 * 3 2 1 6 6 N 1.46509 * 109.46571 * 175.00005 * 5 3 2 7 7 C 1.34777 * 119.99365 * 180.02562 * 6 5 3 8 8 O 1.21271 * 120.00430 * 0.02562 * 7 6 5 9 9 C 1.50706 * 119.99307 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.46512 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47938 * 304.99766 * 10 9 7 12 12 C 1.53100 * 109.47648 * 184.97685 * 10 9 7 13 13 C 1.53174 * 109.16076 * 182.41144 * 12 10 9 14 14 C 1.53171 * 109.03964 * 56.98230 * 13 12 10 15 15 C 1.53098 * 109.16146 * 303.01793 * 14 13 12 16 16 O 1.42899 * 109.42419 * 57.60392 * 15 14 13 17 17 N 1.46893 * 109.47190 * 185.63270 * 3 2 1 18 18 C 1.46894 * 111.00088 * 86.61711 * 17 3 2 19 19 C 1.50699 * 109.47505 * 185.21873 * 18 17 3 20 20 O 1.21293 * 120.00135 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00272 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00134 * 180.02562 * 21 19 18 23 23 H 1.08008 * 120.00230 * 359.97438 * 22 21 19 24 24 C 1.38955 * 120.00129 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99922 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99999 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47139 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47044 * 120.00091 * 26 24 22 29 29 H 1.48497 * 109.47160 * 240.00156 * 26 24 22 30 30 H 1.09005 * 109.47236 * 174.18916 * 1 2 3 31 31 H 1.09005 * 109.47223 * 294.18849 * 1 2 3 32 32 H 1.08996 * 109.47544 * 54.18545 * 1 2 3 33 33 H 1.09004 * 109.47177 * 240.00726 * 2 1 3 34 34 H 1.08994 * 109.47571 * 120.00129 * 2 1 3 35 35 H 1.08997 * 109.47117 * 294.99521 * 5 3 2 36 36 H 1.08995 * 109.47242 * 55.00190 * 5 3 2 37 37 H 0.96997 * 120.00114 * 0.02562 * 6 5 3 38 38 H 1.08997 * 109.47037 * 299.99495 * 9 7 6 39 39 H 1.08995 * 109.47213 * 60.00097 * 9 7 6 40 40 H 1.09000 * 109.52023 * 302.31496 * 12 10 9 41 41 H 1.08997 * 109.51991 * 62.50061 * 12 10 9 42 42 H 1.08999 * 109.54172 * 176.84779 * 13 12 10 43 43 H 1.09003 * 109.54164 * 297.10847 * 13 12 10 44 44 H 1.08989 * 109.52567 * 62.92129 * 14 13 12 45 45 H 1.09001 * 109.52431 * 183.11707 * 14 13 12 46 46 H 1.09001 * 109.48314 * 177.59699 * 15 14 13 47 47 H 1.09004 * 109.47808 * 297.61312 * 15 14 13 48 48 H 1.00903 * 111.00415 * 210.57146 * 17 3 2 49 49 H 1.09004 * 109.47334 * 305.21546 * 18 17 3 50 50 H 1.09000 * 109.47645 * 65.21778 * 18 17 3 51 51 H 0.96998 * 119.99832 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5966 1.9847 -0.8352 5 6 1.6488 2.1217 1.3141 6 7 2.2382 3.4620 1.3654 7 6 2.0272 4.2502 2.4381 8 8 1.3499 3.8499 3.3609 9 6 2.6339 5.6287 2.4910 10 6 2.2427 6.3079 3.8051 11 1 1.1574 6.3066 3.9058 12 6 2.7539 7.7510 3.8058 13 6 2.4112 8.4051 5.1478 14 6 3.0204 7.5720 6.2797 15 6 2.4989 6.1358 6.1834 16 8 2.8238 5.5973 4.9003 17 7 3.5026 1.4448 -0.1359 18 6 3.9000 1.4096 -1.5497 19 6 5.3985 1.2837 -1.6473 20 8 6.0696 1.2292 -0.6385 21 7 5.9932 1.2327 -2.8558 22 6 7.3564 1.1176 -2.9446 23 1 7.9540 1.0683 -2.0462 24 6 7.9695 1.0645 -4.1905 25 7 7.2425 1.1240 -5.2835 26 14 9.8271 0.9085 -4.3115 27 1 10.4098 0.8608 -2.9464 28 1 10.1726 -0.3383 -5.0404 29 1 10.3754 2.0782 -5.0437 30 1 -0.3634 -1.0224 -0.1040 31 1 -0.3634 0.4211 0.9375 32 1 -0.3634 0.6013 -0.8333 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 0.5632 2.1996 1.3737 36 1 2.0172 1.5304 2.1524 37 1 2.7802 3.7820 0.6274 38 1 3.7194 5.5504 2.4313 39 1 2.2656 6.2203 1.6530 40 1 3.8347 7.7546 3.6643 41 1 2.2779 8.3064 2.9977 42 1 2.8213 9.4145 5.1767 43 1 1.3285 8.4464 5.2674 44 1 4.1064 7.5720 6.1882 45 1 2.7348 7.9995 7.2409 46 1 2.9620 5.5280 6.9607 47 1 1.4169 6.1324 6.3157 48 1 3.9082 2.2403 0.3339 49 1 3.4311 0.5551 -2.0377 50 1 3.5799 2.3288 -2.0402 51 1 5.4566 1.2766 -3.6626 52 1 7.6705 1.0873 -6.1533 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715052285.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:26 Heat of formation + Delta-G solvation = -164.125233 kcal Electronic energy + Delta-G solvation = -29952.452060 eV Core-core repulsion = 25756.946887 eV Total energy + Delta-G solvation = -4195.505174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.14977 -40.28060 -39.83829 -38.42071 -35.97385 -34.98596 -34.50520 -33.89518 -33.68457 -33.19093 -30.17556 -28.94930 -27.50711 -25.82339 -25.23492 -24.66200 -23.44398 -21.55774 -21.16618 -21.15500 -20.99632 -19.90602 -18.32950 -17.72958 -17.55320 -17.30237 -16.74689 -16.68808 -16.63791 -16.34638 -15.89027 -15.64357 -15.51272 -15.35402 -15.17734 -14.97442 -14.54640 -14.39599 -14.04019 -13.90978 -13.68609 -13.54401 -13.49672 -13.22029 -13.18821 -12.88967 -12.86574 -12.63019 -12.42836 -12.37181 -12.17412 -12.11321 -12.03748 -11.95925 -11.66039 -11.51771 -11.48299 -11.26864 -10.86103 -10.32825 -10.31073 -10.11175 -9.99646 -9.34476 -8.45810 -5.93911 1.37000 1.42694 1.56415 1.67312 2.07041 2.16050 2.29731 2.85588 2.87025 3.21746 3.48242 3.64711 3.72929 3.74694 3.94695 3.98605 4.10095 4.13501 4.21599 4.23094 4.31407 4.33582 4.42316 4.47084 4.48926 4.57517 4.59022 4.61370 4.69316 4.73215 4.77270 4.83339 4.89049 4.96879 4.98347 5.08231 5.13787 5.19170 5.23296 5.29851 5.36529 5.40124 5.42554 5.50410 5.89372 6.10378 6.35662 6.36730 6.48499 6.61990 7.14698 7.24372 7.58471 8.14371 8.71662 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010006 B = 0.002236 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.560548 B =12516.679374 C =14683.963328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.111 4.111 3 C 0.086 3.914 4 H 0.072 0.928 5 C 0.125 3.875 6 N -0.728 5.728 7 C 0.513 3.487 8 O -0.572 6.572 9 C -0.135 4.135 10 C 0.103 3.897 11 H 0.053 0.947 12 C -0.148 4.148 13 C -0.123 4.123 14 C -0.153 4.153 15 C 0.056 3.944 16 O -0.399 6.399 17 N -0.682 5.682 18 C 0.065 3.935 19 C 0.438 3.562 20 O -0.623 6.623 21 N -0.573 5.573 22 C -0.331 4.331 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.990 3.010 27 H -0.275 1.275 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.084 0.916 36 H 0.053 0.947 37 H 0.407 0.593 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.046 0.954 48 H 0.344 0.656 49 H 0.104 0.896 50 H 0.075 0.925 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.348 13.482 12.604 24.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.150 4.150 3 C -0.024 4.024 4 H 0.090 0.910 5 C 0.000 4.000 6 N -0.382 5.382 7 C 0.300 3.700 8 O -0.451 6.451 9 C -0.175 4.175 10 C 0.045 3.955 11 H 0.071 0.929 12 C -0.185 4.185 13 C -0.160 4.160 14 C -0.191 4.191 15 C -0.020 4.020 16 O -0.319 6.319 17 N -0.317 5.317 18 C -0.067 4.067 19 C 0.225 3.775 20 O -0.509 6.509 21 N -0.211 5.211 22 C -0.461 4.461 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.198 1.198 29 H -0.195 1.195 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.243 0.757 38 H 0.127 0.873 39 H 0.159 0.841 40 H 0.090 0.910 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.065 0.935 48 H 0.164 0.836 49 H 0.122 0.878 50 H 0.093 0.907 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.162 12.314 13.789 24.556 hybrid contribution 0.762 0.740 -1.024 1.476 sum -15.400 13.055 12.765 23.885 Atomic orbital electron populations 1.21789 0.93956 1.02564 1.02274 1.21487 0.96327 0.94692 1.02477 1.21867 0.86721 0.97432 0.96367 0.91042 1.21510 0.98780 0.82291 0.97372 1.46055 1.54111 1.16363 1.21641 1.21056 0.79852 0.88009 0.81039 1.90682 1.41016 1.75895 1.37490 1.21876 1.03799 0.92455 0.99328 1.21865 0.96654 0.91264 0.85715 0.92923 1.22223 1.02486 0.94540 0.99284 1.21605 1.01121 0.99534 0.93735 1.22184 1.01294 0.95340 1.00289 1.22644 0.99386 0.95034 0.84970 1.87956 1.73649 1.55420 1.14826 1.59973 1.08882 1.50598 1.12203 1.21601 0.91061 1.03317 0.90726 1.20916 0.91149 0.82241 0.83160 1.90510 1.67095 1.56556 1.36777 1.41928 1.07257 1.64754 1.07131 1.19664 0.83481 1.49244 0.93661 0.90525 1.25997 1.04640 0.96465 0.94131 1.69668 1.37715 1.50401 0.98259 0.84907 0.77189 0.78310 0.78157 1.19964 1.19764 1.19479 0.91857 0.92418 0.91705 0.91833 0.92428 0.89798 0.92863 0.75671 0.87309 0.84069 0.90964 0.88740 0.89962 0.91523 0.91533 0.89421 0.89062 0.93539 0.83556 0.87786 0.90691 0.76923 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.54 71.98 0.69 -1.72 16 2 C -0.11 -2.38 5.65 30.60 0.17 -2.21 16 3 C 0.09 1.87 2.27 44.92 0.10 1.97 16 4 H 0.07 1.30 7.83 -2.39 -0.02 1.28 16 5 C 0.12 2.81 4.95 86.38 0.43 3.24 16 6 N -0.73 -15.47 4.97 -463.04 -2.30 -17.77 16 7 C 0.51 12.49 7.71 87.66 0.68 13.16 16 8 O -0.57 -18.67 15.42 10.79 0.17 -18.50 16 9 C -0.14 -2.33 5.41 29.85 0.16 -2.16 16 10 C 0.10 1.98 2.19 30.63 0.07 2.04 16 11 H 0.05 1.10 7.96 -2.39 -0.02 1.09 16 12 C -0.15 -1.95 5.42 30.69 0.17 -1.78 16 13 C -0.12 -1.46 6.03 30.71 0.19 -1.28 16 14 C -0.15 -2.12 6.14 30.68 0.19 -1.93 16 15 C 0.06 1.07 6.84 72.01 0.49 1.56 16 16 O -0.40 -10.06 9.64 -135.19 -1.30 -11.37 16 17 N -0.68 -20.29 5.84 -495.58 -2.89 -23.18 16 18 C 0.07 2.07 5.93 85.56 0.51 2.58 16 19 C 0.44 20.23 7.83 87.66 0.69 20.92 16 20 O -0.62 -34.25 15.89 -3.07 -0.05 -34.30 16 21 N -0.57 -28.68 5.29 -306.97 -1.62 -30.30 16 22 C -0.33 -18.58 9.68 84.04 0.81 -17.76 16 23 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -48.80 13.05 21.66 0.28 -48.51 16 26 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.06 0.92 6.99 -2.38 -0.02 0.90 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 1.45 7.41 -2.38 -0.02 1.43 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.08 1.76 6.97 -2.39 -0.02 1.74 16 36 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.41 7.18 7.40 -92.71 -0.69 6.49 16 38 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.34 10.55 6.61 -89.69 -0.59 9.95 16 49 H 0.10 3.01 7.38 -2.38 -0.02 3.00 16 50 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 52 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 Total: -1.00 -75.27 416.10 -0.97 -76.24 By element: Atomic # 1 Polarization: 47.70 SS G_CDS: -1.08 Total: 46.62 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 5.80 Total: 16.44 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -6.54 Total: -119.77 kcal Atomic # 8 Polarization: -62.99 SS G_CDS: -1.19 Total: -64.17 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -75.27 -0.97 -76.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715052285.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.882 kcal (2) G-P(sol) polarization free energy of solvation -75.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds