Wall clock time and date at job start Wed Apr 1 2020 00:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47126 * 2 1 4 4 H 1.08998 * 110.67938 * 303.49541 * 3 2 1 5 5 C 1.54996 * 110.61804 * 180.52381 * 3 2 1 6 6 C 1.54807 * 102.09320 * 204.48058 * 5 3 2 7 7 C 1.54096 * 104.18767 * 20.88151 * 6 5 3 8 8 H 1.09004 * 109.87713 * 242.60387 * 7 6 5 9 9 C 1.50707 * 109.87921 * 121.45470 * 7 6 5 10 10 O 1.21275 * 119.99974 * 245.71189 * 9 7 6 11 11 N 1.34771 * 119.99818 * 65.71363 * 9 7 6 12 12 C 1.46511 * 120.00286 * 359.97438 * 11 9 7 13 13 C 1.46501 * 120.00025 * 180.02562 * 11 9 7 14 14 C 1.53002 * 109.47101 * 90.00306 * 13 11 9 15 15 N 1.46897 * 109.47166 * 180.02562 * 14 13 11 16 16 C 1.46898 * 110.99494 * 293.94741 * 15 14 13 17 17 C 1.46900 * 111.00003 * 169.99649 * 15 14 13 18 18 C 1.50699 * 109.46879 * 189.99300 * 17 15 14 19 19 O 1.21290 * 120.00151 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99748 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99872 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00132 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99944 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00072 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99787 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47244 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46954 * 120.00229 * 25 23 21 28 28 H 1.48493 * 109.46922 * 239.99888 * 25 23 21 29 29 O 1.43741 * 107.29619 * 2.03213 * 7 6 5 30 30 H 1.08998 * 109.46867 * 59.99445 * 1 2 3 31 31 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46627 * 299.99850 * 1 2 3 33 33 H 1.09001 * 109.46616 * 240.00707 * 2 1 3 34 34 H 1.08994 * 109.47080 * 120.01015 * 2 1 3 35 35 H 1.09000 * 110.90545 * 322.68078 * 5 3 2 36 36 H 1.09004 * 110.90489 * 86.27896 * 5 3 2 37 37 H 1.09003 * 110.48700 * 262.20320 * 6 5 3 38 38 H 1.08998 * 110.59849 * 139.61372 * 6 5 3 39 39 H 1.08999 * 109.46983 * 89.99949 * 12 11 9 40 40 H 1.08997 * 109.47265 * 209.99703 * 12 11 9 41 41 H 1.08994 * 109.46653 * 330.00329 * 12 11 9 42 42 H 1.09004 * 109.47211 * 209.99936 * 13 11 9 43 43 H 1.08996 * 109.46797 * 330.00252 * 13 11 9 44 44 H 1.09004 * 109.46786 * 299.99891 * 14 13 11 45 45 H 1.09001 * 109.47376 * 59.99799 * 14 13 11 46 46 H 1.09004 * 109.47356 * 60.00597 * 16 15 14 47 47 H 1.09003 * 109.47389 * 180.02562 * 16 15 14 48 48 H 1.08997 * 109.47710 * 300.00143 * 16 15 14 49 49 H 1.08998 * 109.47205 * 309.99654 * 17 15 14 50 50 H 1.09007 * 109.47072 * 69.99793 * 17 15 14 51 51 H 0.96999 * 120.00113 * 0.02562 * 20 18 17 52 52 H 0.96994 * 120.00006 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6378 1.9930 -0.8504 5 6 3.5897 1.4735 -0.0133 6 6 3.8918 2.8555 0.6156 7 6 2.6052 3.2089 1.3867 8 1 2.1585 4.1110 0.9684 9 6 2.9232 3.4198 2.8446 10 8 2.4800 2.6585 3.6782 11 7 3.6999 4.4545 3.2221 12 6 4.2357 5.3739 2.2151 13 6 4.0095 4.6592 4.6393 14 6 5.2891 3.9004 4.9966 15 7 5.5992 4.1052 6.4178 16 6 5.9392 5.5090 6.6854 17 6 6.6781 3.2095 6.8556 18 6 6.8021 3.2687 8.3564 19 8 6.0640 3.9860 8.9981 20 7 7.7326 2.5237 8.9855 21 6 7.8458 2.5779 10.3508 22 1 7.1891 3.2172 10.9221 23 6 8.8054 1.8103 10.9994 24 7 9.6048 1.0328 10.3041 25 14 8.9592 1.8836 12.8596 26 1 7.9496 2.8273 13.4029 27 1 8.7291 0.5315 13.4289 28 1 10.3207 2.3497 13.2257 29 8 1.7006 2.1017 1.2389 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5140 0.8898 35 1 4.0000 0.6698 0.5981 36 1 3.9711 1.4184 -1.0329 37 1 4.0857 3.5943 -0.1620 38 1 4.7394 2.7893 1.2977 39 1 3.5339 6.1935 2.0614 40 1 5.1903 5.7726 2.5584 41 1 4.3815 4.8395 1.2763 42 1 4.1526 5.7228 4.8300 43 1 3.1851 4.2885 5.2484 44 1 5.1460 2.8367 4.8059 45 1 6.1135 4.2710 4.3874 46 1 5.0955 6.1448 6.4167 47 1 6.1648 5.6327 7.7446 48 1 6.8098 5.7912 6.0935 49 1 6.4495 2.1886 6.5499 50 1 7.6178 3.5232 6.4008 51 1 8.3227 1.9498 8.4723 52 1 10.2744 0.4967 10.7569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715519877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:30 Heat of formation + Delta-G solvation = -103.988711 kcal Electronic energy + Delta-G solvation = -30250.818827 eV Core-core repulsion = 26057.921368 eV Total energy + Delta-G solvation = -4192.897459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.85995 -39.10696 -38.48272 -36.70117 -35.48946 -34.00472 -33.79980 -32.60997 -31.22041 -30.44313 -28.67960 -27.72388 -26.95132 -25.51014 -24.58588 -23.55643 -22.22452 -21.36787 -21.18328 -19.54104 -19.08376 -17.80962 -17.61643 -16.89288 -16.87079 -16.17400 -15.81015 -15.37173 -15.21915 -14.85487 -14.54334 -14.37495 -14.23649 -13.96858 -13.89046 -13.61097 -13.56275 -13.41988 -13.26283 -13.18068 -12.91977 -12.55788 -12.22874 -12.08682 -12.06257 -11.90867 -11.84105 -11.48581 -11.40345 -11.27436 -11.24380 -11.17341 -11.00200 -10.91727 -10.77955 -10.36133 -10.31380 -10.19181 -9.62655 -9.45300 -8.95062 -8.38651 -7.94238 -7.82288 -6.38350 -3.78847 2.40631 2.51512 3.18905 3.29209 3.36720 3.49152 3.94470 3.96721 4.04544 4.14973 4.31597 4.34770 4.37786 4.66080 4.70070 4.78508 4.86763 4.91711 4.92340 5.01454 5.11586 5.13000 5.17660 5.22023 5.28992 5.30546 5.32082 5.40458 5.47170 5.50837 5.61162 5.64817 5.67046 5.69930 5.81639 5.85528 5.92764 5.99861 6.01869 6.06055 6.27168 6.32852 6.49140 6.55741 7.12235 7.28176 7.42183 7.58893 8.01281 8.10401 8.65756 9.21902 9.58410 10.10418 10.79620 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.001936 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.338692 B =14461.834933 C =15335.309036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C 0.073 3.927 4 H 0.072 0.928 5 C -0.151 4.151 6 C -0.148 4.148 7 C 0.063 3.937 8 H 0.092 0.908 9 C 0.510 3.490 10 O -0.507 6.507 11 N -0.616 5.616 12 C 0.067 3.933 13 C 0.120 3.880 14 C 0.044 3.956 15 N -0.515 5.515 16 C 0.020 3.980 17 C 0.048 3.952 18 C 0.445 3.555 19 O -0.576 6.576 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 O -0.341 6.341 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.096 0.904 44 H 0.075 0.925 45 H 0.029 0.971 46 H 0.060 0.940 47 H 0.097 0.903 48 H 0.013 0.987 49 H 0.088 0.912 50 H 0.047 0.953 51 H 0.392 0.608 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 4.847 -28.236 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.016 3.984 4 H 0.090 0.910 5 C -0.188 4.188 6 C -0.186 4.186 7 C 0.002 3.998 8 H 0.110 0.890 9 C 0.296 3.704 10 O -0.380 6.380 11 N -0.352 5.352 12 C -0.076 4.076 13 C -0.002 4.002 14 C -0.086 4.086 15 N -0.240 5.240 16 C -0.128 4.128 17 C -0.084 4.084 18 C 0.231 3.769 19 O -0.460 6.460 20 N -0.202 5.202 21 C -0.426 4.426 22 H 0.122 0.878 23 C -0.181 4.181 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 O -0.259 6.259 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.047 0.953 46 H 0.079 0.921 47 H 0.115 0.885 48 H 0.032 0.968 49 H 0.106 0.894 50 H 0.065 0.935 51 H 0.225 0.775 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.084 4.607 -26.848 29.409 hybrid contribution 1.596 -0.013 -0.127 1.601 sum -9.488 4.594 -26.975 28.961 Atomic orbital electron populations 1.21725 0.95088 1.01727 1.02319 1.21561 0.96993 0.93993 1.02955 1.23290 0.93486 0.94377 0.87253 0.90969 1.23212 0.96258 0.97323 1.02025 1.22987 0.97431 0.98169 0.99993 1.22583 0.91470 0.92499 0.93278 0.89023 1.20485 0.78613 0.80780 0.90503 1.90772 1.50575 1.43638 1.53052 1.47779 1.50827 1.28527 1.08062 1.22029 0.99732 0.93654 0.92203 1.21483 0.98625 1.00329 0.79798 1.22431 0.96167 1.01231 0.88738 1.61447 1.41333 1.05702 1.15486 1.22601 0.98097 0.87821 1.04287 1.21855 0.92695 0.97786 0.96017 1.19720 0.84025 0.84864 0.88310 1.90482 1.45385 1.43114 1.67048 1.41873 1.31185 1.39375 1.07793 1.19755 1.16716 1.24300 0.81855 0.87841 1.25264 0.96024 0.96205 1.00583 1.69619 1.20970 1.27477 1.36355 0.85797 0.78091 0.78120 0.82323 1.19216 1.20765 1.20832 1.89039 1.53577 1.42836 1.40428 0.92979 0.92646 0.91761 0.90593 0.90741 0.89916 0.89723 0.89425 0.89721 0.92307 0.90647 0.90603 0.90198 0.88604 0.90663 0.95293 0.92131 0.88460 0.96830 0.89414 0.93537 0.77520 0.91978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.83 37.16 0.37 -0.76 16 2 C -0.12 -0.86 5.71 -26.73 -0.15 -1.01 16 3 C 0.07 0.56 3.33 -25.68 -0.09 0.48 16 4 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 5 C -0.15 -0.95 6.59 -24.73 -0.16 -1.12 16 6 C -0.15 -0.93 4.71 -25.21 -0.12 -1.04 16 7 C 0.06 0.58 3.04 -27.31 -0.08 0.50 16 8 H 0.09 0.63 8.00 -51.93 -0.42 0.22 16 9 C 0.51 6.46 6.86 -10.98 -0.08 6.38 16 10 O -0.51 -9.05 16.11 -14.01 -0.23 -9.28 16 11 N -0.62 -6.36 2.87 -181.56 -0.52 -6.88 16 12 C 0.07 0.39 10.02 59.85 0.60 0.99 16 13 C 0.12 1.50 5.33 -4.04 -0.02 1.47 16 14 C 0.04 0.61 5.28 -3.82 -0.02 0.59 16 15 N -0.52 -9.01 4.50 -244.37 -1.10 -10.11 16 16 C 0.02 0.32 8.96 60.06 0.54 0.86 16 17 C 0.05 0.90 5.45 -4.98 -0.03 0.87 16 18 C 0.45 10.83 7.47 -10.98 -0.08 10.74 16 19 O -0.58 -15.84 13.91 5.55 0.08 -15.76 16 20 N -0.57 -14.67 5.29 -10.96 -0.06 -14.73 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.56 16 22 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 24 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 O -0.34 -3.92 10.11 -54.80 -0.55 -4.47 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.60 7.92 -51.93 -0.41 0.19 16 33 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.62 8.06 -51.93 -0.42 0.20 16 36 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.30 7.54 -51.93 -0.39 -0.09 16 38 H 0.08 0.60 7.43 -51.93 -0.39 0.21 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 41 H 0.08 0.31 4.43 -51.93 -0.23 0.08 16 42 H 0.08 0.85 6.48 -51.93 -0.34 0.52 16 43 H 0.10 1.48 7.42 -51.93 -0.39 1.09 16 44 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 45 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 46 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 47 H 0.10 1.93 5.83 -51.93 -0.30 1.63 16 48 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 49 H 0.09 1.56 7.93 -51.93 -0.41 1.14 16 50 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 51 H 0.39 9.73 7.90 -40.82 -0.32 9.41 16 52 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 412.73 15.07 6.22 6.22 Total: -1.00 -35.67 412.73 -8.94 -44.62 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -8.91 Total: 7.40 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 0.43 Total: 10.85 kcal Atomic # 7 Polarization: -55.00 SS G_CDS: -0.96 Total: -55.95 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.70 Total: -29.51 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.67 -8.94 -44.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715519877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.373 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds