Wall clock time and date at job start Wed Apr 1 2020 00:24:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47126 * 2 1 4 4 H 1.08998 * 110.67938 * 303.49541 * 3 2 1 5 5 C 1.54996 * 110.61804 * 180.52381 * 3 2 1 6 6 C 1.54807 * 102.09320 * 204.48058 * 5 3 2 7 7 C 1.54096 * 104.18767 * 20.88151 * 6 5 3 8 8 H 1.09004 * 109.87713 * 242.60387 * 7 6 5 9 9 C 1.50707 * 109.87921 * 121.45470 * 7 6 5 10 10 O 1.21275 * 119.99974 * 245.71189 * 9 7 6 11 11 N 1.34771 * 119.99818 * 65.71363 * 9 7 6 12 12 C 1.46511 * 120.00286 * 359.97438 * 11 9 7 13 13 C 1.46501 * 120.00025 * 180.02562 * 11 9 7 14 14 C 1.53002 * 109.47101 * 90.00306 * 13 11 9 15 15 N 1.46897 * 109.47166 * 180.02562 * 14 13 11 16 16 C 1.46898 * 110.99494 * 293.94741 * 15 14 13 17 17 C 1.46900 * 111.00003 * 169.99649 * 15 14 13 18 18 C 1.50699 * 109.46879 * 189.99300 * 17 15 14 19 19 O 1.21290 * 120.00151 * 0.02562 * 18 17 15 20 20 N 1.34779 * 119.99748 * 179.97438 * 18 17 15 21 21 C 1.37101 * 119.99872 * 179.97438 * 20 18 17 22 22 H 1.08005 * 120.00132 * 0.02562 * 21 20 18 23 23 C 1.38955 * 119.99944 * 180.02562 * 21 20 18 24 24 N 1.31406 * 120.00072 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99787 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47244 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46954 * 120.00229 * 25 23 21 28 28 H 1.48493 * 109.46922 * 239.99888 * 25 23 21 29 29 O 1.43741 * 107.29619 * 2.03213 * 7 6 5 30 30 H 1.08998 * 109.46867 * 59.99445 * 1 2 3 31 31 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46627 * 299.99850 * 1 2 3 33 33 H 1.09001 * 109.46616 * 240.00707 * 2 1 3 34 34 H 1.08994 * 109.47080 * 120.01015 * 2 1 3 35 35 H 1.09000 * 110.90545 * 322.68078 * 5 3 2 36 36 H 1.09004 * 110.90489 * 86.27896 * 5 3 2 37 37 H 1.09003 * 110.48700 * 262.20320 * 6 5 3 38 38 H 1.08998 * 110.59849 * 139.61372 * 6 5 3 39 39 H 1.08999 * 109.46983 * 89.99949 * 12 11 9 40 40 H 1.08997 * 109.47265 * 209.99703 * 12 11 9 41 41 H 1.08994 * 109.46653 * 330.00329 * 12 11 9 42 42 H 1.09004 * 109.47211 * 209.99936 * 13 11 9 43 43 H 1.08996 * 109.46797 * 330.00252 * 13 11 9 44 44 H 1.09004 * 109.46786 * 299.99891 * 14 13 11 45 45 H 1.09001 * 109.47376 * 59.99799 * 14 13 11 46 46 H 1.09004 * 109.47356 * 60.00597 * 16 15 14 47 47 H 1.09003 * 109.47389 * 180.02562 * 16 15 14 48 48 H 1.08997 * 109.47710 * 300.00143 * 16 15 14 49 49 H 1.08998 * 109.47205 * 309.99654 * 17 15 14 50 50 H 1.09007 * 109.47072 * 69.99793 * 17 15 14 51 51 H 0.96999 * 120.00113 * 0.02562 * 20 18 17 52 52 H 0.96994 * 120.00006 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6378 1.9930 -0.8504 5 6 3.5897 1.4735 -0.0133 6 6 3.8918 2.8555 0.6156 7 6 2.6052 3.2089 1.3867 8 1 2.1585 4.1110 0.9684 9 6 2.9232 3.4198 2.8446 10 8 2.4800 2.6585 3.6782 11 7 3.6999 4.4545 3.2221 12 6 4.2357 5.3739 2.2151 13 6 4.0095 4.6592 4.6393 14 6 5.2891 3.9004 4.9966 15 7 5.5992 4.1052 6.4178 16 6 5.9392 5.5090 6.6854 17 6 6.6781 3.2095 6.8556 18 6 6.8021 3.2687 8.3564 19 8 6.0640 3.9860 8.9981 20 7 7.7326 2.5237 8.9855 21 6 7.8458 2.5779 10.3508 22 1 7.1891 3.2172 10.9221 23 6 8.8054 1.8103 10.9994 24 7 9.6048 1.0328 10.3041 25 14 8.9592 1.8836 12.8596 26 1 7.9496 2.8273 13.4029 27 1 8.7291 0.5315 13.4289 28 1 10.3207 2.3497 13.2257 29 8 1.7006 2.1017 1.2389 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5140 0.8898 35 1 4.0000 0.6698 0.5981 36 1 3.9711 1.4184 -1.0329 37 1 4.0857 3.5943 -0.1620 38 1 4.7394 2.7893 1.2977 39 1 3.5339 6.1935 2.0614 40 1 5.1903 5.7726 2.5584 41 1 4.3815 4.8395 1.2763 42 1 4.1526 5.7228 4.8300 43 1 3.1851 4.2885 5.2484 44 1 5.1460 2.8367 4.8059 45 1 6.1135 4.2710 4.3874 46 1 5.0955 6.1448 6.4167 47 1 6.1648 5.6327 7.7446 48 1 6.8098 5.7912 6.0935 49 1 6.4495 2.1886 6.5499 50 1 7.6178 3.5232 6.4008 51 1 8.3227 1.9498 8.4723 52 1 10.2744 0.4967 10.7569 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715519877.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:29 Heat of formation + Delta-G solvation = -130.097825 kcal Electronic energy + Delta-G solvation = -30251.951003 eV Core-core repulsion = 26057.921368 eV Total energy + Delta-G solvation = -4194.029635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.63912 -40.43608 -39.74955 -38.10747 -36.56406 -35.85014 -34.59946 -33.32050 -33.22543 -31.42891 -29.61650 -29.00381 -27.67254 -27.02173 -25.85768 -24.61445 -22.78944 -22.40128 -21.92287 -21.03566 -20.34987 -19.86579 -18.35109 -17.92375 -17.71787 -17.50333 -16.74323 -16.67164 -16.49566 -16.37974 -15.87696 -15.65372 -15.34285 -14.99378 -14.94208 -14.78855 -14.48885 -14.26835 -14.17229 -14.04697 -13.86941 -13.76918 -13.47302 -13.21893 -13.13993 -13.00692 -12.79492 -12.61855 -12.55311 -12.50205 -12.42407 -12.40963 -12.12262 -11.93441 -11.90221 -11.75690 -11.50392 -11.47852 -11.07976 -10.47025 -10.34926 -10.01602 -9.75745 -9.22558 -8.47651 -5.96347 1.35529 1.40510 1.50241 1.55132 1.71168 2.03098 2.28063 2.75733 2.95491 3.18749 3.36392 3.40797 3.51908 3.81340 3.85766 3.92524 4.01935 4.16253 4.19070 4.22082 4.24426 4.33876 4.36824 4.38892 4.41240 4.47493 4.57429 4.59058 4.63218 4.69301 4.73733 4.79804 4.85162 4.89486 4.94016 4.97910 5.00828 5.07299 5.13597 5.20836 5.23610 5.40152 5.40951 5.43874 5.83761 5.88608 6.04764 6.17585 6.34061 6.59343 7.11768 7.12259 7.54583 8.10545 8.70148 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016561 B = 0.001936 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.338692 B =14461.834933 C =15335.309036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C 0.067 3.933 4 H 0.096 0.904 5 C -0.149 4.149 6 C -0.141 4.141 7 C 0.063 3.937 8 H 0.121 0.879 9 C 0.500 3.500 10 O -0.577 6.577 11 N -0.608 5.608 12 C 0.058 3.942 13 C 0.125 3.875 14 C 0.055 3.945 15 N -0.542 5.542 16 C 0.026 3.974 17 C 0.061 3.939 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.274 1.274 27 H -0.272 1.272 28 H -0.269 1.269 29 O -0.382 6.382 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.102 0.898 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.055 0.945 48 H 0.038 0.962 49 H 0.097 0.903 50 H 0.073 0.927 51 H 0.395 0.605 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.692 6.121 -31.387 33.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C 0.010 3.990 4 H 0.114 0.886 5 C -0.186 4.186 6 C -0.179 4.179 7 C 0.002 3.998 8 H 0.138 0.862 9 C 0.288 3.712 10 O -0.455 6.455 11 N -0.343 5.343 12 C -0.083 4.083 13 C 0.002 3.998 14 C -0.074 4.074 15 N -0.267 5.267 16 C -0.122 4.122 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.212 5.212 21 C -0.461 4.461 22 H 0.097 0.903 23 C -0.215 4.215 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.197 1.197 28 H -0.194 1.194 29 O -0.301 6.301 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.134 0.866 37 H 0.148 0.852 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.107 0.893 41 H 0.117 0.883 42 H 0.122 0.878 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.077 0.923 46 H 0.102 0.898 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.115 0.885 50 H 0.091 0.909 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.855 5.910 -30.062 32.183 hybrid contribution 1.178 -0.383 0.803 1.477 sum -8.677 5.526 -29.259 31.015 Atomic orbital electron populations 1.21706 0.95407 1.01898 1.01687 1.21614 0.96763 0.94409 1.02926 1.23541 0.94608 0.94204 0.86616 0.88605 1.23227 0.95154 0.96807 1.03420 1.23055 0.95302 0.99149 1.00397 1.22789 0.92993 0.93125 0.90876 0.86152 1.21354 0.77824 0.80183 0.91804 1.90736 1.53443 1.46261 1.55093 1.47862 1.49921 1.28498 1.07973 1.22392 1.00626 0.93483 0.91772 1.21291 0.96466 1.01082 0.80980 1.22350 0.97660 1.00460 0.86931 1.61364 1.41126 1.06177 1.18049 1.22493 1.00137 0.87530 1.02031 1.21694 0.94624 0.99023 0.91733 1.20712 0.82510 0.83213 0.90672 1.90459 1.46431 1.44276 1.68696 1.41939 1.31964 1.40038 1.07274 1.19704 1.17709 1.25518 0.83173 0.90301 1.26068 0.95119 0.95288 1.04983 1.69678 1.21045 1.27455 1.38047 0.84848 0.78314 0.78264 0.76763 1.19824 1.19725 1.19361 1.89018 1.54690 1.43981 1.42433 0.91347 0.92133 0.94533 0.88005 0.93295 0.92009 0.86593 0.85224 0.90605 0.90441 0.89295 0.88322 0.87814 0.92516 0.92645 0.92336 0.89782 0.92618 0.94372 0.88478 0.90906 0.77081 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.83 71.98 0.71 -1.51 16 2 C -0.12 -1.70 5.71 30.60 0.17 -1.53 16 3 C 0.07 0.92 3.33 31.28 0.10 1.03 16 4 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 5 C -0.15 -1.53 6.59 31.89 0.21 -1.32 16 6 C -0.14 -1.31 4.71 31.58 0.15 -1.16 16 7 C 0.06 1.06 3.04 30.22 0.09 1.15 16 8 H 0.12 1.27 8.00 -2.38 -0.02 1.26 16 9 C 0.50 12.67 6.86 87.66 0.60 13.27 16 10 O -0.58 -22.03 16.11 15.69 0.25 -21.77 16 11 N -0.61 -11.63 2.87 -846.74 -2.43 -14.06 16 12 C 0.06 0.45 10.02 127.77 1.28 1.73 16 13 C 0.13 3.03 5.33 86.38 0.46 3.49 16 14 C 0.05 1.46 5.28 86.30 0.46 1.92 16 15 N -0.54 -18.76 4.50 -927.04 -4.17 -22.94 16 16 C 0.03 0.80 8.96 127.69 1.14 1.95 16 17 C 0.06 2.26 5.45 85.56 0.47 2.73 16 18 C 0.44 22.06 7.47 87.66 0.66 22.72 16 19 O -0.61 -35.07 13.91 -3.06 -0.04 -35.11 16 20 N -0.57 -30.66 5.29 -306.97 -1.62 -32.28 16 21 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 24 N -0.92 -50.83 13.05 21.66 0.28 -50.55 16 25 Si 0.99 44.03 29.55 68.60 2.03 46.05 16 26 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 O -0.38 -8.80 10.11 -130.27 -1.32 -10.11 16 30 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.04 0.73 7.92 -2.39 -0.02 0.71 16 33 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.06 0.89 8.06 -2.39 -0.02 0.87 16 36 H 0.12 0.46 8.14 -2.38 -0.02 0.45 16 37 H 0.13 0.13 7.54 -2.39 -0.02 0.12 16 38 H 0.08 0.87 7.43 -2.39 -0.02 0.85 16 39 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.09 0.51 8.07 -2.39 -0.02 0.49 16 41 H 0.10 0.32 4.43 -2.39 -0.01 0.31 16 42 H 0.10 1.99 6.48 -2.38 -0.02 1.97 16 43 H 0.06 1.84 7.42 -2.39 -0.02 1.82 16 44 H 0.05 1.71 7.93 -2.38 -0.02 1.69 16 45 H 0.06 1.24 8.12 -2.39 -0.02 1.22 16 46 H 0.08 2.17 6.47 -2.38 -0.02 2.16 16 47 H 0.06 2.24 5.83 -2.39 -0.01 2.23 16 48 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.10 3.44 7.93 -2.39 -0.02 3.42 16 50 H 0.07 2.35 8.12 -2.38 -0.02 2.33 16 51 H 0.40 20.05 7.90 -92.71 -0.73 19.32 16 52 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -84.09 412.73 0.94 -83.15 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 0.18 Total: 32.08 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 7.78 Total: 25.54 kcal Atomic # 7 Polarization: -111.88 SS G_CDS: -7.94 Total: -119.83 kcal Atomic # 8 Polarization: -65.89 SS G_CDS: -1.11 Total: -67.00 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.05 kcal Total: -84.09 0.94 -83.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715519877.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.945 kcal (2) G-P(sol) polarization free energy of solvation -84.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds