Wall clock time and date at job start Wed Apr 1 2020 00:24:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 H 1.09003 * 110.32849 * 52.74808 * 3 2 1 5 5 C 1.54474 * 110.37021 * 174.99783 * 3 2 1 6 6 C 1.54519 * 104.06023 * 142.81340 * 5 3 2 7 7 C 1.54478 * 104.06057 * 0.02562 * 6 5 3 8 8 H 1.08996 * 110.37779 * 94.96578 * 7 6 5 9 9 C 1.50709 * 110.37139 * 217.19217 * 7 6 5 10 10 O 1.21280 * 119.99699 * 110.78584 * 9 7 6 11 11 N 1.34771 * 119.99731 * 290.79034 * 9 7 6 12 12 C 1.46501 * 120.00274 * 355.38050 * 11 9 7 13 13 C 1.46505 * 119.99980 * 175.38382 * 11 9 7 14 14 C 1.53001 * 109.46983 * 90.00082 * 13 11 9 15 15 N 1.46895 * 109.47018 * 180.02562 * 14 13 11 16 16 C 1.46905 * 111.00275 * 66.04282 * 15 14 13 17 17 C 1.46904 * 110.99768 * 189.99725 * 15 14 13 18 18 C 1.50706 * 109.46697 * 169.99722 * 17 15 14 19 19 O 1.21294 * 120.00381 * 0.02562 * 18 17 15 20 20 N 1.34776 * 119.99705 * 179.97438 * 18 17 15 21 21 C 1.37093 * 120.00162 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99735 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00596 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99442 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47010 * 59.99742 * 25 23 21 27 27 H 1.48501 * 109.47098 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47098 * 299.99803 * 25 23 21 29 29 O 1.44425 * 104.90388 * 336.07355 * 7 6 5 30 30 H 1.08999 * 109.47476 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47004 * 300.00184 * 1 2 3 32 32 H 1.09002 * 109.47037 * 59.99686 * 1 2 3 33 33 H 1.09000 * 109.47004 * 239.99816 * 2 1 3 34 34 H 1.09002 * 109.47037 * 120.00314 * 2 1 3 35 35 H 1.09000 * 110.51666 * 24.17249 * 5 3 2 36 36 H 1.09003 * 110.63006 * 261.51100 * 5 3 2 37 37 H 1.09001 * 110.50866 * 241.35837 * 6 5 3 38 38 H 1.08998 * 110.50976 * 118.64762 * 6 5 3 39 39 H 1.08995 * 109.47448 * 275.01960 * 12 11 9 40 40 H 1.09006 * 109.47220 * 35.01724 * 12 11 9 41 41 H 1.08999 * 109.47287 * 155.01168 * 12 11 9 42 42 H 1.09000 * 109.46749 * 209.99709 * 13 11 9 43 43 H 1.08994 * 109.47039 * 329.99718 * 13 11 9 44 44 H 1.09003 * 109.46839 * 299.99895 * 14 13 11 45 45 H 1.08997 * 109.47285 * 59.99489 * 14 13 11 46 46 H 1.08993 * 109.46701 * 60.00114 * 16 15 14 47 47 H 1.09000 * 109.46846 * 180.02562 * 16 15 14 48 48 H 1.09004 * 109.46885 * 300.00011 * 16 15 14 49 49 H 1.08997 * 109.47160 * 289.99750 * 17 15 14 50 50 H 1.08999 * 109.47298 * 50.00452 * 17 15 14 51 51 H 0.97006 * 120.00118 * 0.02562 * 20 18 17 52 52 H 0.97007 * 120.00042 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0058 0.8136 5 6 3.5794 1.4685 0.1263 6 6 4.0107 2.6420 -0.7818 7 6 2.6808 3.1864 -1.3486 8 1 2.3235 4.0200 -0.7441 9 6 2.8587 3.6174 -2.7818 10 8 2.3306 2.9885 -3.6741 11 7 3.6048 4.7017 -3.0716 12 6 4.1591 5.5199 -1.9902 13 6 3.8615 5.0623 -4.4682 14 6 2.7615 6.0040 -4.9622 15 7 3.0185 6.3651 -6.3627 16 6 2.8951 5.1930 -7.2398 17 6 2.1253 7.4462 -6.8001 18 6 2.5749 7.9560 -8.1452 19 8 3.5437 7.4665 -8.6864 20 7 1.8998 8.9551 -8.7471 21 6 2.3084 9.4186 -9.9709 22 1 3.1710 8.9827 -10.4529 23 6 1.6127 10.4490 -10.5914 24 7 0.5633 10.9797 -10.0047 25 14 2.1691 11.0799 -12.2593 26 1 2.1257 9.9721 -13.2471 27 1 1.2659 12.1726 -12.7016 28 1 3.5575 11.5963 -12.1552 29 8 1.7606 2.0762 -1.2682 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.0079 0.5320 -0.2307 36 1 3.8770 1.6548 1.1582 37 1 4.6523 2.2854 -1.5876 38 1 4.5194 3.4094 -0.1983 39 1 3.4147 6.2476 -1.6669 40 1 4.4286 4.8787 -1.1509 41 1 5.0464 6.0422 -2.3479 42 1 4.8276 5.5613 -4.5429 43 1 3.8700 4.1606 -5.0805 44 1 1.7953 5.5050 -4.8875 45 1 2.7530 6.9057 -4.3498 46 1 1.8868 4.7865 -7.1631 47 1 3.0908 5.4884 -8.2706 48 1 3.6168 4.4346 -6.9362 49 1 1.1064 7.0669 -6.8773 50 1 2.1564 8.2591 -6.0746 51 1 1.1247 9.3464 -8.3144 52 1 0.0774 11.6989 -10.4380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715519884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:40 Heat of formation + Delta-G solvation = -105.506776 kcal Electronic energy + Delta-G solvation = -30029.136958 eV Core-core repulsion = 25836.173672 eV Total energy + Delta-G solvation = -4192.963287 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.83659 -39.17130 -38.47660 -36.66745 -35.50232 -34.04597 -33.80003 -32.61676 -31.21896 -30.44787 -28.69750 -27.61428 -26.99981 -25.52719 -24.62563 -23.53959 -22.26378 -21.43344 -21.13869 -19.55802 -19.07342 -17.80493 -17.55342 -16.91809 -16.81316 -16.30656 -15.81644 -15.37881 -15.21570 -14.84939 -14.58055 -14.39227 -14.21974 -13.98729 -13.89032 -13.73472 -13.65478 -13.36505 -13.28638 -13.15016 -12.80900 -12.59266 -12.31179 -12.11757 -12.04004 -11.97107 -11.80820 -11.47516 -11.37773 -11.25882 -11.22355 -11.17016 -11.04665 -10.87234 -10.72820 -10.41392 -10.33073 -10.18086 -9.79863 -9.43166 -8.97158 -8.37800 -7.93965 -7.80789 -6.38094 -3.78794 2.31956 2.49907 3.22669 3.27971 3.32491 3.49130 3.94412 3.95259 4.05560 4.12708 4.30498 4.35082 4.39488 4.61197 4.64574 4.72285 4.83194 4.86860 4.96232 5.01883 5.06014 5.15533 5.16348 5.23602 5.26733 5.30341 5.37398 5.39157 5.46451 5.53621 5.55876 5.58723 5.73329 5.74077 5.79905 5.85423 5.93798 5.96683 6.02330 6.11917 6.24565 6.33189 6.41422 6.65044 7.09047 7.31691 7.43475 7.58429 7.94882 8.10062 8.65993 9.21754 9.58535 10.10738 10.79663 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.001699 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.253550 B =16480.945259 C =16831.605828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C 0.070 3.930 4 H 0.072 0.928 5 C -0.150 4.150 6 C -0.144 4.144 7 C 0.060 3.940 8 H 0.092 0.908 9 C 0.517 3.483 10 O -0.512 6.512 11 N -0.613 5.613 12 C 0.068 3.932 13 C 0.121 3.879 14 C 0.041 3.959 15 N -0.516 5.516 16 C 0.021 3.979 17 C 0.047 3.953 18 C 0.445 3.555 19 O -0.577 6.577 20 N -0.565 5.565 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.903 5.903 25 Si 0.931 3.069 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.274 1.274 29 O -0.338 6.338 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.035 0.965 45 H 0.072 0.928 46 H 0.016 0.984 47 H 0.096 0.904 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.087 0.913 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.286 -16.135 26.886 31.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.012 3.988 4 H 0.090 0.910 5 C -0.187 4.187 6 C -0.182 4.182 7 C -0.002 4.002 8 H 0.110 0.890 9 C 0.303 3.697 10 O -0.386 6.386 11 N -0.349 5.349 12 C -0.075 4.075 13 C -0.001 4.001 14 C -0.089 4.089 15 N -0.240 5.240 16 C -0.127 4.127 17 C -0.085 4.085 18 C 0.231 3.769 19 O -0.461 6.461 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 O -0.256 6.256 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.035 0.965 47 H 0.114 0.886 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.838 -16.554 25.766 31.005 hybrid contribution -1.005 0.633 -0.205 1.205 sum 3.834 -15.921 25.561 30.356 Atomic orbital electron populations 1.21746 0.95080 1.01755 1.02411 1.21584 0.96980 0.94054 1.02828 1.23159 0.94060 0.94826 0.86731 0.91043 1.23011 0.95961 0.99318 1.00452 1.22957 0.96690 0.98530 1.00054 1.22817 0.90957 0.92080 0.94335 0.88996 1.20222 0.78714 0.80375 0.90388 1.90753 1.45735 1.53864 1.48257 1.47759 1.52428 1.27079 1.07654 1.22032 0.99664 0.95526 0.90238 1.21526 0.98872 0.99767 0.79955 1.22436 0.97341 0.98698 0.90391 1.61543 1.53079 1.08681 1.00745 1.22578 0.98586 0.91462 1.00072 1.21856 0.94338 0.94785 0.97472 1.19726 0.86272 0.83728 0.87203 1.90479 1.28893 1.60160 1.66587 1.41859 1.28002 1.31534 1.18773 1.19652 1.12909 1.15595 0.94661 0.87962 1.25258 0.95884 0.96854 0.99985 1.69611 1.18810 1.26553 1.39443 0.85914 0.78396 0.78288 0.81586 1.19948 1.21022 1.19915 1.89321 1.56315 1.42626 1.37372 0.92628 0.92872 0.91790 0.90846 0.90605 0.90141 0.90044 0.90005 0.89332 0.92264 0.90985 0.90091 0.89205 0.89624 0.94668 0.90961 0.96538 0.88586 0.92089 0.93464 0.89505 0.77505 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.85 37.16 0.37 -0.71 16 2 C -0.12 -0.78 5.56 -26.73 -0.15 -0.92 16 3 C 0.07 0.50 3.24 -25.96 -0.08 0.42 16 4 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 5 C -0.15 -0.80 6.63 -25.16 -0.17 -0.97 16 6 C -0.14 -0.87 5.67 -25.16 -0.14 -1.02 16 7 C 0.06 0.54 2.79 -27.10 -0.08 0.46 16 8 H 0.09 0.63 7.84 -51.93 -0.41 0.23 16 9 C 0.52 6.39 6.93 -10.98 -0.08 6.31 16 10 O -0.51 -8.82 16.18 -13.61 -0.22 -9.04 16 11 N -0.61 -6.26 2.87 -181.57 -0.52 -6.78 16 12 C 0.07 0.40 10.05 59.85 0.60 1.01 16 13 C 0.12 1.49 5.34 -4.04 -0.02 1.47 16 14 C 0.04 0.58 5.28 -3.83 -0.02 0.56 16 15 N -0.52 -9.10 4.50 -244.37 -1.10 -10.20 16 16 C 0.02 0.37 8.96 60.07 0.54 0.91 16 17 C 0.05 0.88 5.45 -4.97 -0.03 0.86 16 18 C 0.45 10.77 7.48 -10.98 -0.08 10.69 16 19 O -0.58 -15.76 13.91 5.55 0.08 -15.68 16 20 N -0.56 -14.60 5.29 -10.96 -0.06 -14.66 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.14 16 25 Si 0.93 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 28 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 29 O -0.34 -3.82 10.40 -54.40 -0.57 -4.39 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.58 8.01 -51.93 -0.42 0.16 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.08 0.44 7.87 -51.93 -0.41 0.03 16 36 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.08 0.59 7.87 -51.93 -0.41 0.18 16 38 H 0.09 0.30 6.59 -51.93 -0.34 -0.04 16 39 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 40 H 0.07 0.28 4.63 -51.93 -0.24 0.04 16 41 H 0.08 0.41 7.84 -51.93 -0.41 0.01 16 42 H 0.09 1.00 7.86 -51.93 -0.41 0.59 16 43 H 0.09 1.21 5.90 -51.93 -0.31 0.91 16 44 H 0.04 0.55 8.12 -51.93 -0.42 0.13 16 45 H 0.07 0.92 7.93 -51.93 -0.41 0.51 16 46 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.10 2.02 5.82 -51.93 -0.30 1.71 16 48 H 0.06 0.98 6.47 -51.93 -0.34 0.65 16 49 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 50 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 51 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 52 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 412.79 15.07 6.22 6.22 Total: -1.00 -35.27 412.79 -8.91 -44.18 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.86 Total: 7.23 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 0.42 Total: 10.99 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.96 Total: -55.79 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -0.71 Total: -29.12 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.27 -8.91 -44.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715519884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.323 kcal (2) G-P(sol) polarization free energy of solvation -35.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds