Wall clock time and date at job start Wed Apr 1 2020 00:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 H 1.09003 * 110.32849 * 52.74808 * 3 2 1 5 5 C 1.54474 * 110.37021 * 174.99783 * 3 2 1 6 6 C 1.54519 * 104.06023 * 142.81340 * 5 3 2 7 7 C 1.54478 * 104.06057 * 0.02562 * 6 5 3 8 8 H 1.08996 * 110.37779 * 94.96578 * 7 6 5 9 9 C 1.50709 * 110.37139 * 217.19217 * 7 6 5 10 10 O 1.21280 * 119.99699 * 110.78584 * 9 7 6 11 11 N 1.34771 * 119.99731 * 290.79034 * 9 7 6 12 12 C 1.46501 * 120.00274 * 355.38050 * 11 9 7 13 13 C 1.46505 * 119.99980 * 175.38382 * 11 9 7 14 14 C 1.53001 * 109.46983 * 90.00082 * 13 11 9 15 15 N 1.46895 * 109.47018 * 180.02562 * 14 13 11 16 16 C 1.46905 * 111.00275 * 66.04282 * 15 14 13 17 17 C 1.46904 * 110.99768 * 189.99725 * 15 14 13 18 18 C 1.50706 * 109.46697 * 169.99722 * 17 15 14 19 19 O 1.21294 * 120.00381 * 0.02562 * 18 17 15 20 20 N 1.34776 * 119.99705 * 179.97438 * 18 17 15 21 21 C 1.37093 * 120.00162 * 180.02562 * 20 18 17 22 22 H 1.08003 * 119.99735 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00596 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99442 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00384 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47010 * 59.99742 * 25 23 21 27 27 H 1.48501 * 109.47098 * 179.97438 * 25 23 21 28 28 H 1.48496 * 109.47098 * 299.99803 * 25 23 21 29 29 O 1.44425 * 104.90388 * 336.07355 * 7 6 5 30 30 H 1.08999 * 109.47476 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47004 * 300.00184 * 1 2 3 32 32 H 1.09002 * 109.47037 * 59.99686 * 1 2 3 33 33 H 1.09000 * 109.47004 * 239.99816 * 2 1 3 34 34 H 1.09002 * 109.47037 * 120.00314 * 2 1 3 35 35 H 1.09000 * 110.51666 * 24.17249 * 5 3 2 36 36 H 1.09003 * 110.63006 * 261.51100 * 5 3 2 37 37 H 1.09001 * 110.50866 * 241.35837 * 6 5 3 38 38 H 1.08998 * 110.50976 * 118.64762 * 6 5 3 39 39 H 1.08995 * 109.47448 * 275.01960 * 12 11 9 40 40 H 1.09006 * 109.47220 * 35.01724 * 12 11 9 41 41 H 1.08999 * 109.47287 * 155.01168 * 12 11 9 42 42 H 1.09000 * 109.46749 * 209.99709 * 13 11 9 43 43 H 1.08994 * 109.47039 * 329.99718 * 13 11 9 44 44 H 1.09003 * 109.46839 * 299.99895 * 14 13 11 45 45 H 1.08997 * 109.47285 * 59.99489 * 14 13 11 46 46 H 1.08993 * 109.46701 * 60.00114 * 16 15 14 47 47 H 1.09000 * 109.46846 * 180.02562 * 16 15 14 48 48 H 1.09004 * 109.46885 * 300.00011 * 16 15 14 49 49 H 1.08997 * 109.47160 * 289.99750 * 17 15 14 50 50 H 1.08999 * 109.47298 * 50.00452 * 17 15 14 51 51 H 0.97006 * 120.00118 * 0.02562 * 20 18 17 52 52 H 0.97007 * 120.00042 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5829 2.0058 0.8136 5 6 3.5794 1.4685 0.1263 6 6 4.0107 2.6420 -0.7818 7 6 2.6808 3.1864 -1.3486 8 1 2.3235 4.0200 -0.7441 9 6 2.8587 3.6174 -2.7818 10 8 2.3306 2.9885 -3.6741 11 7 3.6048 4.7017 -3.0716 12 6 4.1591 5.5199 -1.9902 13 6 3.8615 5.0623 -4.4682 14 6 2.7615 6.0040 -4.9622 15 7 3.0185 6.3651 -6.3627 16 6 2.8951 5.1930 -7.2398 17 6 2.1253 7.4462 -6.8001 18 6 2.5749 7.9560 -8.1452 19 8 3.5437 7.4665 -8.6864 20 7 1.8998 8.9551 -8.7471 21 6 2.3084 9.4186 -9.9709 22 1 3.1710 8.9827 -10.4529 23 6 1.6127 10.4490 -10.5914 24 7 0.5633 10.9797 -10.0047 25 14 2.1691 11.0799 -12.2593 26 1 2.1257 9.9721 -13.2471 27 1 1.2659 12.1726 -12.7016 28 1 3.5575 11.5963 -12.1552 29 8 1.7606 2.0762 -1.2682 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.0079 0.5320 -0.2307 36 1 3.8770 1.6548 1.1582 37 1 4.6523 2.2854 -1.5876 38 1 4.5194 3.4094 -0.1983 39 1 3.4147 6.2476 -1.6669 40 1 4.4286 4.8787 -1.1509 41 1 5.0464 6.0422 -2.3479 42 1 4.8276 5.5613 -4.5429 43 1 3.8700 4.1606 -5.0805 44 1 1.7953 5.5050 -4.8875 45 1 2.7530 6.9057 -4.3498 46 1 1.8868 4.7865 -7.1631 47 1 3.0908 5.4884 -8.2706 48 1 3.6168 4.4346 -6.9362 49 1 1.1064 7.0669 -6.8773 50 1 2.1564 8.2591 -6.0746 51 1 1.1247 9.3464 -8.3144 52 1 0.0774 11.6989 -10.4380 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715519884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:24:39 Heat of formation + Delta-G solvation = -130.895015 kcal Electronic energy + Delta-G solvation = -30030.237875 eV Core-core repulsion = 25836.173672 eV Total energy + Delta-G solvation = -4194.064203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60014 -40.43269 -39.79732 -38.09052 -36.57412 -35.83720 -34.60284 -33.30214 -33.20054 -31.44048 -29.61411 -28.99667 -27.75010 -26.98561 -25.92156 -24.60316 -22.84347 -22.34461 -21.95152 -21.02598 -20.35281 -19.85003 -18.28798 -17.91212 -17.68589 -17.46811 -16.86451 -16.64937 -16.61112 -16.21754 -15.82579 -15.67122 -15.59357 -15.05423 -14.87853 -14.69213 -14.54201 -14.26643 -14.19477 -14.09271 -13.88009 -13.77523 -13.45957 -13.32562 -13.07112 -12.97987 -12.84576 -12.63405 -12.59147 -12.56269 -12.42002 -12.35233 -12.12180 -11.91101 -11.86520 -11.73382 -11.48255 -11.45631 -11.01574 -10.63364 -10.34770 -10.00573 -9.77112 -9.32756 -8.46015 -5.94865 1.40083 1.41616 1.44440 1.52862 1.69424 2.04512 2.29016 2.73109 2.99253 3.20253 3.34096 3.40689 3.53515 3.84207 3.87692 3.93886 4.03149 4.13294 4.15450 4.20216 4.25356 4.32073 4.35287 4.38573 4.44207 4.48622 4.54898 4.56373 4.59115 4.64839 4.76379 4.77630 4.85621 4.88159 4.90443 4.99889 5.03266 5.06339 5.12930 5.14550 5.20644 5.40136 5.40452 5.41879 5.80760 5.84083 6.00520 6.10685 6.30675 6.60598 7.07273 7.12866 7.55886 8.11672 8.71211 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027819 B = 0.001699 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.253550 B =16480.945259 C =16831.605828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.062 3.938 4 H 0.088 0.912 5 C -0.144 4.144 6 C -0.139 4.139 7 C 0.059 3.941 8 H 0.119 0.881 9 C 0.508 3.492 10 O -0.576 6.576 11 N -0.606 5.606 12 C 0.059 3.941 13 C 0.126 3.874 14 C 0.049 3.951 15 N -0.526 5.526 16 C 0.029 3.971 17 C 0.057 3.943 18 C 0.443 3.557 19 O -0.612 6.612 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.080 0.920 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.270 1.270 29 O -0.381 6.381 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.102 0.898 35 H 0.075 0.925 36 H 0.112 0.888 37 H 0.065 0.935 38 H 0.125 0.875 39 H 0.072 0.928 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.106 0.894 43 H 0.060 0.940 44 H 0.018 0.982 45 H 0.095 0.905 46 H 0.015 0.985 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.059 0.941 50 H 0.115 0.885 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 -15.259 29.849 33.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C 0.005 3.995 4 H 0.106 0.894 5 C -0.182 4.182 6 C -0.177 4.177 7 C -0.002 4.002 8 H 0.137 0.863 9 C 0.296 3.704 10 O -0.455 6.455 11 N -0.340 5.340 12 C -0.082 4.082 13 C 0.003 3.997 14 C -0.079 4.079 15 N -0.250 5.250 16 C -0.119 4.119 17 C -0.074 4.074 18 C 0.230 3.770 19 O -0.498 6.498 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.199 1.199 27 H -0.195 1.195 28 H -0.195 1.195 29 O -0.300 6.300 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.084 0.916 38 H 0.143 0.857 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.113 0.887 46 H 0.034 0.966 47 H 0.081 0.919 48 H 0.094 0.906 49 H 0.077 0.923 50 H 0.133 0.867 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.754 -15.653 28.789 33.271 hybrid contribution -1.290 0.324 -1.070 1.707 sum 4.464 -15.330 27.719 31.989 Atomic orbital electron populations 1.21735 0.95684 1.01946 1.01551 1.21632 0.96486 0.94277 1.03121 1.23417 0.95670 0.94756 0.85666 0.89380 1.23027 0.94303 0.98839 1.01995 1.22999 0.94969 0.99717 0.99965 1.22998 0.92468 0.92594 0.92109 0.86322 1.21017 0.77795 0.80080 0.91502 1.90718 1.48505 1.55981 1.50264 1.47832 1.51605 1.26860 1.07728 1.22380 1.00375 0.95821 0.89587 1.21354 0.98879 0.98298 0.81211 1.22455 0.97186 0.99867 0.88434 1.61527 1.52961 1.08171 1.02348 1.22410 0.98983 0.92038 0.98444 1.21756 0.94777 0.96015 0.94831 1.20652 0.85266 0.82501 0.88591 1.90458 1.30422 1.60947 1.67988 1.41921 1.28427 1.32242 1.18520 1.19642 1.13342 1.17076 0.96240 0.90198 1.26055 0.95666 0.96357 1.03247 1.69675 1.19165 1.26662 1.40690 0.84970 0.78247 0.77879 0.77120 1.19862 1.19491 1.19548 1.89301 1.57424 1.43730 1.39570 0.91963 0.91595 0.94676 0.92794 0.87948 0.90668 0.86950 0.91618 0.85685 0.90954 0.88408 0.88802 0.87563 0.92126 0.96337 0.88676 0.96605 0.91906 0.90647 0.92327 0.86658 0.77069 0.91314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.85 71.98 0.71 -1.40 16 2 C -0.12 -1.46 5.56 30.59 0.17 -1.29 16 3 C 0.06 0.79 3.24 31.10 0.10 0.89 16 4 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 5 C -0.14 -1.13 6.63 31.61 0.21 -0.92 16 6 C -0.14 -1.29 5.67 31.61 0.18 -1.11 16 7 C 0.06 0.97 2.79 30.35 0.08 1.06 16 8 H 0.12 1.26 7.84 -2.39 -0.02 1.24 16 9 C 0.51 12.43 6.93 87.66 0.61 13.04 16 10 O -0.58 -20.88 16.18 15.30 0.25 -20.64 16 11 N -0.61 -11.44 2.87 -846.75 -2.43 -13.88 16 12 C 0.06 0.49 10.05 127.77 1.28 1.77 16 13 C 0.13 3.00 5.34 86.38 0.46 3.46 16 14 C 0.05 1.35 5.28 86.30 0.46 1.81 16 15 N -0.53 -18.36 4.50 -927.03 -4.17 -22.53 16 16 C 0.03 1.09 8.96 127.69 1.14 2.23 16 17 C 0.06 2.13 5.45 85.56 0.47 2.60 16 18 C 0.44 21.77 7.48 87.66 0.66 22.42 16 19 O -0.61 -34.46 13.91 -3.07 -0.04 -34.50 16 20 N -0.57 -30.20 5.29 -306.98 -1.62 -31.82 16 21 C -0.33 -19.26 9.68 84.04 0.81 -18.44 16 22 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 23 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 24 N -0.92 -50.43 13.05 21.66 0.28 -50.15 16 25 Si 0.99 43.53 29.55 68.60 2.03 45.56 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 O -0.38 -8.58 10.40 -130.65 -1.36 -9.94 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.03 0.68 8.01 -2.39 -0.02 0.66 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.68 7.87 -2.39 -0.02 0.66 16 36 H 0.11 0.22 8.14 -2.39 -0.02 0.20 16 37 H 0.06 0.84 7.87 -2.39 -0.02 0.82 16 38 H 0.13 0.22 6.59 -2.39 -0.02 0.20 16 39 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.10 0.30 4.63 -2.38 -0.01 0.29 16 41 H 0.09 0.59 7.84 -2.39 -0.02 0.57 16 42 H 0.11 2.18 7.86 -2.39 -0.02 2.16 16 43 H 0.06 1.77 5.90 -2.39 -0.01 1.75 16 44 H 0.02 0.58 8.12 -2.39 -0.02 0.56 16 45 H 0.09 2.17 7.93 -2.39 -0.02 2.15 16 46 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.06 2.76 5.82 -2.39 -0.01 2.75 16 48 H 0.07 2.53 6.47 -2.39 -0.02 2.51 16 49 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 50 H 0.12 3.63 7.93 -2.39 -0.02 3.62 16 51 H 0.40 19.82 7.90 -92.70 -0.73 19.08 16 52 H 0.28 14.24 8.31 -92.70 -0.77 13.47 16 Total: -1.00 -81.14 412.79 0.92 -80.22 By element: Atomic # 1 Polarization: 31.65 SS G_CDS: 0.18 Total: 31.84 kcal Atomic # 6 Polarization: 18.04 SS G_CDS: 7.81 Total: 25.84 kcal Atomic # 7 Polarization: -110.44 SS G_CDS: -7.94 Total: -118.38 kcal Atomic # 8 Polarization: -63.93 SS G_CDS: -1.15 Total: -65.08 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -81.14 0.92 -80.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715519884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.672 kcal (2) G-P(sol) polarization free energy of solvation -81.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds