Wall clock time and date at job start Wed Apr 1 2020 00:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 C 1.50699 * 109.46497 * 119.99314 * 2 1 3 5 5 O 1.21281 * 120.00469 * 335.34538 * 4 2 1 6 6 N 1.34782 * 119.99686 * 155.34218 * 4 2 1 7 7 C 1.46925 * 120.62994 * 175.31192 * 6 4 2 8 8 C 1.53192 * 108.77187 * 233.63324 * 7 6 4 9 9 C 1.53044 * 109.31242 * 305.36217 * 8 7 6 10 10 C 1.50701 * 109.45736 * 181.38869 * 9 8 7 11 11 O 1.21280 * 120.00457 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99965 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00210 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47037 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.47112 * 305.00168 * 14 13 12 16 16 O 1.42894 * 109.46982 * 65.00303 * 14 13 12 17 17 C 1.53002 * 109.46876 * 184.99715 * 14 13 12 18 18 N 1.46500 * 109.46890 * 179.97438 * 17 14 13 19 19 C 1.36933 * 119.99933 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99970 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00171 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99731 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00013 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46995 * 90.00093 * 23 21 19 25 25 H 1.48498 * 109.47022 * 209.99952 * 23 21 19 26 26 H 1.48494 * 109.47235 * 330.00229 * 23 21 19 27 27 C 1.53033 * 109.52574 * 61.37820 * 9 8 7 28 28 C 1.46928 * 120.62895 * 355.33544 * 6 4 2 29 29 H 1.08993 * 109.47240 * 300.01041 * 1 2 3 30 30 H 1.09004 * 109.46561 * 60.00528 * 1 2 3 31 31 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46986 * 239.99429 * 2 1 3 33 33 H 1.08993 * 109.47810 * 64.98122 * 3 2 1 34 34 H 1.09005 * 109.46776 * 184.98538 * 3 2 1 35 35 H 1.09001 * 109.47107 * 304.97737 * 3 2 1 36 36 H 1.08995 * 109.58333 * 113.84734 * 7 6 4 37 37 H 1.08994 * 109.70438 * 353.48650 * 7 6 4 38 38 H 1.09001 * 109.49344 * 185.41380 * 8 7 6 39 39 H 1.09001 * 109.50276 * 65.31867 * 8 7 6 40 40 H 1.08997 * 109.45927 * 301.36365 * 9 8 7 41 41 H 0.97008 * 119.99735 * 359.97438 * 12 10 9 42 42 H 1.09003 * 109.47193 * 59.99931 * 13 12 10 43 43 H 1.09001 * 109.47284 * 299.99837 * 13 12 10 44 44 H 0.96695 * 114.00803 * 59.99663 * 16 14 13 45 45 H 1.08998 * 109.47619 * 300.00141 * 17 14 13 46 46 H 1.08998 * 109.47066 * 60.00572 * 17 14 13 47 47 H 0.97002 * 120.00201 * 0.02562 * 18 17 14 48 48 H 0.96997 * 120.00064 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.50241 * 58.57365 * 27 9 8 50 50 H 1.09002 * 109.50096 * 178.67428 * 27 9 8 51 51 H 1.09003 * 109.58395 * 246.15581 * 28 6 4 52 52 H 1.09005 * 109.58694 * 6.43869 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.3344 -0.7757 2.2203 6 7 3.2570 -1.2729 1.2312 7 6 3.8017 -1.8790 2.4538 8 6 5.1752 -1.2635 2.7394 9 6 6.0680 -1.4238 1.5068 10 6 7.4310 -0.8498 1.7961 11 8 7.6652 -0.3603 2.8807 12 7 8.3899 -0.8803 0.8494 13 6 9.7150 -0.3228 1.1307 14 6 10.6082 -0.4841 -0.1011 15 1 10.6318 -1.5326 -0.3980 16 8 10.0869 0.3031 -1.1737 17 6 12.0262 -0.0162 0.2324 18 7 12.8815 -0.1712 -0.9468 19 6 14.2021 0.1859 -0.8865 20 1 14.6132 0.5813 0.0306 21 6 15.0125 0.0396 -2.0040 22 7 14.5114 -0.4419 -3.1218 23 14 16.8142 0.5260 -1.9214 24 1 17.6229 -0.6422 -1.4895 25 1 17.2680 0.9735 -3.2627 26 1 16.9838 1.6331 -0.9465 27 6 5.4433 -0.6823 0.3228 28 6 4.0730 -1.2914 0.0095 29 1 -0.3633 0.5140 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.7514 1.9300 0.9311 34 1 3.1264 1.4438 -0.0893 35 1 1.6057 1.9814 -0.8421 36 1 3.9055 -2.9549 2.3133 37 1 3.1321 -1.6827 3.2911 38 1 5.6322 -1.7720 3.5883 39 1 5.0586 -0.2043 2.9690 40 1 6.1638 -2.4819 1.2630 41 1 8.2027 -1.2722 -0.0181 42 1 10.1602 -0.8516 1.9736 43 1 9.6198 0.7352 1.3749 44 1 10.0369 1.2490 -0.9793 45 1 12.0026 1.0323 0.5293 46 1 12.4239 -0.6166 1.0506 47 1 12.5122 -0.5260 -1.7706 48 1 15.0776 -0.5445 -3.9025 49 1 5.3241 0.3713 0.5753 50 1 6.0911 -0.7770 -0.5487 51 1 4.1988 -2.3194 -0.3303 52 1 3.5802 -0.7073 -0.7679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716097081.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:48 Heat of formation + Delta-G solvation = -128.535078 kcal Electronic energy + Delta-G solvation = -30054.623764 eV Core-core repulsion = 25860.661895 eV Total energy + Delta-G solvation = -4193.961869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.99408 -39.93758 -37.95216 -37.28516 -35.02305 -34.49930 -34.04850 -33.26756 -31.56944 -31.29084 -29.22673 -27.62462 -26.90099 -25.30115 -24.15681 -23.26342 -22.62932 -21.52799 -21.33030 -20.14762 -19.07312 -18.12341 -17.34730 -17.13589 -16.53158 -16.25256 -16.09258 -15.72663 -15.31868 -15.16873 -14.95663 -14.52105 -14.51171 -14.16052 -13.95033 -13.72602 -13.68807 -13.51513 -13.06092 -13.00305 -12.86859 -12.65601 -12.59528 -12.44296 -12.36754 -12.13440 -11.90843 -11.76267 -11.59164 -11.47175 -11.16574 -11.08281 -10.99538 -10.85460 -10.68033 -10.21285 -10.08825 -9.97884 -9.84068 -9.53478 -9.18618 -9.07463 -8.94347 -6.98278 -5.80250 -3.10007 2.24038 2.46321 2.55688 3.01314 3.40858 3.46103 3.47765 3.96868 4.17968 4.23510 4.35640 4.38922 4.49967 4.54991 4.58499 4.66522 4.71952 4.80935 4.81567 4.95473 4.99561 5.07438 5.17447 5.18690 5.21367 5.25757 5.31008 5.37449 5.40345 5.46960 5.51480 5.55262 5.57663 5.62209 5.73156 5.75643 5.81077 5.89236 5.90435 6.10381 6.14774 6.32015 6.45914 6.61918 6.96109 7.37002 7.64754 7.79200 7.87196 8.08856 8.37945 9.49777 10.05928 10.41849 11.42029 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.001726 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.868698 B =16214.558919 C =16895.488647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C -0.143 4.143 4 C 0.520 3.480 5 O -0.540 6.540 6 N -0.613 5.613 7 C 0.111 3.889 8 C -0.113 4.113 9 C -0.107 4.107 10 C 0.514 3.486 11 O -0.542 6.542 12 N -0.720 5.720 13 C 0.089 3.911 14 C 0.090 3.910 15 H 0.104 0.896 16 O -0.552 6.552 17 C 0.126 3.874 18 N -0.725 5.725 19 C -0.245 4.245 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.908 3.092 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.128 4.128 28 C 0.105 3.895 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.404 0.596 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.374 0.626 45 H 0.023 0.977 46 H 0.028 0.972 47 H 0.389 0.611 48 H 0.256 0.744 49 H 0.075 0.925 50 H 0.086 0.914 51 H 0.075 0.925 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.892 -2.071 5.182 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.138 4.138 3 C -0.200 4.200 4 C 0.309 3.691 5 O -0.417 6.417 6 N -0.347 5.347 7 C -0.012 4.012 8 C -0.151 4.151 9 C -0.128 4.128 10 C 0.300 3.700 11 O -0.419 6.419 12 N -0.372 5.372 13 C -0.035 4.035 14 C 0.030 3.970 15 H 0.122 0.878 16 O -0.357 6.357 17 C -0.003 4.003 18 N -0.370 5.370 19 C -0.376 4.376 20 H 0.088 0.912 21 C -0.208 4.208 22 N -0.578 5.578 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.166 4.166 28 C -0.018 4.018 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.114 0.886 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.118 0.882 41 H 0.239 0.761 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.221 0.779 45 H 0.040 0.960 46 H 0.046 0.954 47 H 0.223 0.777 48 H 0.065 0.935 49 H 0.094 0.906 50 H 0.105 0.895 51 H 0.093 0.907 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -27.957 -2.269 6.264 28.740 hybrid contribution 1.197 0.402 -0.433 1.335 sum -26.761 -1.867 5.831 27.452 Atomic orbital electron populations 1.21659 0.92433 1.02559 1.02629 1.21353 0.98340 0.97633 0.96474 1.21759 1.01432 0.93657 1.03186 1.20749 0.80633 0.77854 0.89903 1.90687 1.55774 1.59442 1.35783 1.48177 1.16571 1.58260 1.11718 1.21646 0.94811 0.96888 0.87810 1.21734 0.93541 1.03047 0.96820 1.21327 0.92368 1.01519 0.97587 1.20559 0.86063 0.79128 0.84225 1.90715 1.81882 1.45446 1.23824 1.45963 1.12453 1.61701 1.17058 1.22115 0.82597 0.99664 0.99156 1.22380 0.92300 0.96775 0.85567 0.87829 1.86563 1.86066 1.22384 1.40688 1.21194 0.88883 0.98005 0.92171 1.42219 1.07103 1.77743 1.09958 1.19221 0.85811 1.35609 0.96963 0.91213 1.24760 0.98331 1.01857 0.95865 1.69672 1.35203 1.51129 1.01776 0.86177 0.85094 0.78077 0.76744 1.21666 1.21707 1.20751 1.21949 0.96267 1.00676 0.97743 1.21851 0.91100 1.02015 0.86801 0.91459 0.91811 0.92412 0.88878 0.91886 0.91988 0.91110 0.91309 0.88645 0.89715 0.90685 0.88183 0.76096 0.90486 0.91104 0.77934 0.95964 0.95405 0.77655 0.93460 0.90602 0.89545 0.90659 0.88845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 8.72 37.16 0.32 -0.52 16 2 C -0.12 -0.71 2.42 -91.77 -0.22 -0.93 16 3 C -0.14 -0.78 9.09 37.16 0.34 -0.44 16 4 C 0.52 4.72 6.80 -10.98 -0.07 4.65 16 5 O -0.54 -6.97 15.53 5.56 0.09 -6.89 16 6 N -0.61 -4.49 2.97 -172.76 -0.51 -5.01 16 7 C 0.11 0.84 6.42 -3.71 -0.02 0.82 16 8 C -0.11 -0.93 4.65 -26.61 -0.12 -1.05 16 9 C -0.11 -0.78 2.49 -91.73 -0.23 -1.01 16 10 C 0.51 5.61 7.15 -10.98 -0.08 5.53 16 11 O -0.54 -8.18 15.98 5.56 0.09 -8.09 16 12 N -0.72 -7.26 5.39 -60.29 -0.32 -7.59 16 13 C 0.09 1.08 5.31 -4.04 -0.02 1.06 16 14 C 0.09 1.28 3.09 -26.73 -0.08 1.20 16 15 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 16 O -0.55 -8.09 13.03 -35.23 -0.46 -8.55 16 17 C 0.13 2.36 5.92 -4.04 -0.02 2.34 16 18 N -0.73 -17.91 5.49 -59.91 -0.33 -18.24 16 19 C -0.24 -6.78 9.99 -15.06 -0.15 -6.93 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 22 N -0.93 -27.92 13.06 55.49 0.72 -27.19 16 23 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 C -0.13 -0.71 5.27 -26.61 -0.14 -0.85 16 28 C 0.11 0.49 6.25 -3.71 -0.02 0.47 16 29 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.38 6.29 -51.93 -0.33 0.05 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.32 7.84 -51.93 -0.41 -0.09 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.10 0.88 7.04 -51.93 -0.37 0.51 16 38 H 0.08 0.74 8.07 -51.93 -0.42 0.32 16 39 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.40 3.35 7.87 -40.82 -0.32 3.03 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.37 4.60 9.05 45.56 0.41 5.01 16 45 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.39 10.27 7.54 -40.82 -0.31 9.96 16 48 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.39 7.53 -51.93 -0.39 0.00 16 51 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 52 H 0.09 0.31 5.14 -51.93 -0.27 0.04 16 LS Contribution 415.74 15.07 6.27 6.27 Total: -1.00 -35.74 415.74 -8.38 -44.12 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -8.27 Total: 10.14 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -0.63 Total: 3.88 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.44 Total: -58.03 kcal Atomic # 8 Polarization: -23.25 SS G_CDS: -0.28 Total: -23.53 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -35.74 -8.38 -44.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716097081.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.420 kcal (2) G-P(sol) polarization free energy of solvation -35.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds