Wall clock time and date at job start Wed Apr 1 2020 00:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52997 * 109.46894 * 2 1 4 4 C 1.50699 * 109.46497 * 119.99314 * 2 1 3 5 5 O 1.21281 * 120.00469 * 335.34538 * 4 2 1 6 6 N 1.34782 * 119.99686 * 155.34218 * 4 2 1 7 7 C 1.46925 * 120.62994 * 175.31192 * 6 4 2 8 8 C 1.53192 * 108.77187 * 233.63324 * 7 6 4 9 9 C 1.53044 * 109.31242 * 305.36217 * 8 7 6 10 10 C 1.50701 * 109.45736 * 181.38869 * 9 8 7 11 11 O 1.21280 * 120.00457 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99965 * 179.97438 * 10 9 8 13 13 C 1.46495 * 120.00210 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47037 * 179.97438 * 13 12 10 15 15 H 1.08998 * 109.47112 * 305.00168 * 14 13 12 16 16 O 1.42894 * 109.46982 * 65.00303 * 14 13 12 17 17 C 1.53002 * 109.46876 * 184.99715 * 14 13 12 18 18 N 1.46500 * 109.46890 * 179.97438 * 17 14 13 19 19 C 1.36933 * 119.99933 * 179.97438 * 18 17 14 20 20 H 1.08001 * 119.99970 * 0.02562 * 19 18 17 21 21 C 1.38817 * 120.00171 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99731 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00013 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.46995 * 90.00093 * 23 21 19 25 25 H 1.48498 * 109.47022 * 209.99952 * 23 21 19 26 26 H 1.48494 * 109.47235 * 330.00229 * 23 21 19 27 27 C 1.53033 * 109.52574 * 61.37820 * 9 8 7 28 28 C 1.46928 * 120.62895 * 355.33544 * 6 4 2 29 29 H 1.08993 * 109.47240 * 300.01041 * 1 2 3 30 30 H 1.09004 * 109.46561 * 60.00528 * 1 2 3 31 31 H 1.08997 * 109.46765 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46986 * 239.99429 * 2 1 3 33 33 H 1.08993 * 109.47810 * 64.98122 * 3 2 1 34 34 H 1.09005 * 109.46776 * 184.98538 * 3 2 1 35 35 H 1.09001 * 109.47107 * 304.97737 * 3 2 1 36 36 H 1.08995 * 109.58333 * 113.84734 * 7 6 4 37 37 H 1.08994 * 109.70438 * 353.48650 * 7 6 4 38 38 H 1.09001 * 109.49344 * 185.41380 * 8 7 6 39 39 H 1.09001 * 109.50276 * 65.31867 * 8 7 6 40 40 H 1.08997 * 109.45927 * 301.36365 * 9 8 7 41 41 H 0.97008 * 119.99735 * 359.97438 * 12 10 9 42 42 H 1.09003 * 109.47193 * 59.99931 * 13 12 10 43 43 H 1.09001 * 109.47284 * 299.99837 * 13 12 10 44 44 H 0.96695 * 114.00803 * 59.99663 * 16 14 13 45 45 H 1.08998 * 109.47619 * 300.00141 * 17 14 13 46 46 H 1.08998 * 109.47066 * 60.00572 * 17 14 13 47 47 H 0.97002 * 120.00201 * 0.02562 * 18 17 14 48 48 H 0.96997 * 120.00064 * 180.02562 * 22 21 19 49 49 H 1.08998 * 109.50241 * 58.57365 * 27 9 8 50 50 H 1.09002 * 109.50096 * 178.67428 * 27 9 8 51 51 H 1.09003 * 109.58395 * 246.15581 * 28 6 4 52 52 H 1.09005 * 109.58694 * 6.43869 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.3344 -0.7757 2.2203 6 7 3.2570 -1.2729 1.2312 7 6 3.8017 -1.8790 2.4538 8 6 5.1752 -1.2635 2.7394 9 6 6.0680 -1.4238 1.5068 10 6 7.4310 -0.8498 1.7961 11 8 7.6652 -0.3603 2.8807 12 7 8.3899 -0.8803 0.8494 13 6 9.7150 -0.3228 1.1307 14 6 10.6082 -0.4841 -0.1011 15 1 10.6318 -1.5326 -0.3980 16 8 10.0869 0.3031 -1.1737 17 6 12.0262 -0.0162 0.2324 18 7 12.8815 -0.1712 -0.9468 19 6 14.2021 0.1859 -0.8865 20 1 14.6132 0.5813 0.0306 21 6 15.0125 0.0396 -2.0040 22 7 14.5114 -0.4419 -3.1218 23 14 16.8142 0.5260 -1.9214 24 1 17.6229 -0.6422 -1.4895 25 1 17.2680 0.9735 -3.2627 26 1 16.9838 1.6331 -0.9465 27 6 5.4433 -0.6823 0.3228 28 6 4.0730 -1.2914 0.0095 29 1 -0.3633 0.5140 0.8898 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.7514 1.9300 0.9311 34 1 3.1264 1.4438 -0.0893 35 1 1.6057 1.9814 -0.8421 36 1 3.9055 -2.9549 2.3133 37 1 3.1321 -1.6827 3.2911 38 1 5.6322 -1.7720 3.5883 39 1 5.0586 -0.2043 2.9690 40 1 6.1638 -2.4819 1.2630 41 1 8.2027 -1.2722 -0.0181 42 1 10.1602 -0.8516 1.9736 43 1 9.6198 0.7352 1.3749 44 1 10.0369 1.2490 -0.9793 45 1 12.0026 1.0323 0.5293 46 1 12.4239 -0.6166 1.0506 47 1 12.5122 -0.5260 -1.7706 48 1 15.0776 -0.5445 -3.9025 49 1 5.3241 0.3713 0.5753 50 1 6.0911 -0.7770 -0.5487 51 1 4.1988 -2.3194 -0.3303 52 1 3.5802 -0.7073 -0.7679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716097081.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:47 Heat of formation + Delta-G solvation = -156.764602 kcal Electronic energy + Delta-G solvation = -30055.847888 eV Core-core repulsion = 25860.661895 eV Total energy + Delta-G solvation = -4195.185993 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.67039 -40.78284 -39.05726 -38.10748 -36.07077 -35.58133 -35.31630 -33.93260 -33.16559 -32.08687 -30.58343 -28.08826 -27.83491 -26.62684 -24.93930 -24.23657 -23.72302 -22.75083 -22.11789 -20.95405 -19.65234 -19.25131 -18.75934 -18.07536 -17.62868 -17.18758 -16.90840 -16.47748 -16.40163 -16.28319 -15.96891 -15.52935 -15.49270 -15.10345 -14.95626 -14.80802 -14.60232 -14.34762 -14.21705 -14.00545 -13.74811 -13.60080 -13.35743 -13.19077 -13.12196 -13.00942 -12.94837 -12.79047 -12.75338 -12.27799 -12.16120 -12.06536 -11.99724 -11.95673 -11.80090 -11.74506 -11.64479 -11.13165 -10.97660 -10.76406 -10.62652 -10.11802 -9.69273 -9.00521 -7.94926 -5.23993 1.48303 1.49479 1.57351 1.57972 1.62789 1.98203 2.14455 2.56430 3.36318 3.42805 3.47733 3.60661 3.63594 3.69327 3.77736 3.93525 4.02932 4.04481 4.08538 4.21073 4.22593 4.29653 4.37040 4.43380 4.47980 4.62438 4.66032 4.69299 4.73384 4.75861 4.79753 4.81650 4.86991 4.91089 4.94066 4.98199 5.07068 5.10203 5.22131 5.23153 5.31482 5.32790 5.40453 5.48651 5.53845 6.26548 6.38200 6.54967 6.80829 7.15172 7.24543 7.34078 8.09462 8.32982 9.28069 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024580 B = 0.001726 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.868698 B =16214.558919 C =16895.488647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.112 4.112 3 C -0.140 4.140 4 C 0.511 3.489 5 O -0.590 6.590 6 N -0.611 5.611 7 C 0.114 3.886 8 C -0.106 4.106 9 C -0.098 4.098 10 C 0.514 3.486 11 O -0.588 6.588 12 N -0.709 5.709 13 C 0.102 3.898 14 C 0.111 3.889 15 H 0.104 0.896 16 O -0.560 6.560 17 C 0.120 3.880 18 N -0.738 5.738 19 C -0.250 4.250 20 H 0.075 0.925 21 C -0.073 4.073 22 N -0.966 5.966 23 Si 0.973 3.027 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.271 1.271 27 C -0.123 4.123 28 C 0.103 3.897 29 H 0.043 0.957 30 H 0.086 0.914 31 H 0.051 0.949 32 H 0.124 0.876 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.048 0.952 40 H 0.128 0.872 41 H 0.416 0.584 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.384 0.616 45 H 0.028 0.972 46 H 0.031 0.969 47 H 0.378 0.622 48 H 0.252 0.748 49 H 0.061 0.939 50 H 0.107 0.893 51 H 0.099 0.901 52 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.103 -2.471 3.796 28.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.133 4.133 3 C -0.198 4.198 4 C 0.301 3.699 5 O -0.471 6.471 6 N -0.344 5.344 7 C -0.008 4.008 8 C -0.144 4.144 9 C -0.119 4.119 10 C 0.302 3.698 11 O -0.469 6.469 12 N -0.361 5.361 13 C -0.024 4.024 14 C 0.051 3.949 15 H 0.122 0.878 16 O -0.366 6.366 17 C -0.007 4.007 18 N -0.381 5.381 19 C -0.382 4.382 20 H 0.093 0.907 21 C -0.266 4.266 22 N -0.616 5.616 23 Si 0.802 3.198 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.196 1.196 27 C -0.161 4.161 28 C -0.019 4.019 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.070 0.930 32 H 0.141 0.859 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.067 0.933 40 H 0.146 0.854 41 H 0.254 0.746 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.233 0.767 45 H 0.046 0.954 46 H 0.049 0.951 47 H 0.210 0.790 48 H 0.060 0.940 49 H 0.080 0.920 50 H 0.125 0.875 51 H 0.117 0.883 52 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -28.166 -2.666 4.875 28.709 hybrid contribution 1.242 0.546 0.074 1.358 sum -26.925 -2.120 4.949 27.458 Atomic orbital electron populations 1.21659 0.92768 1.02197 1.02594 1.21420 0.98080 0.97833 0.95985 1.21759 1.01892 0.93237 1.02890 1.21387 0.80774 0.77526 0.90251 1.90663 1.57313 1.61343 1.37735 1.48308 1.16353 1.57273 1.12447 1.21563 0.93667 0.97976 0.87643 1.21613 0.94196 1.01298 0.97331 1.21342 0.89783 1.03081 0.97706 1.21167 0.87117 0.78190 0.83375 1.90703 1.82775 1.47578 1.25797 1.45824 1.11471 1.61191 1.17576 1.21816 0.83237 0.99664 0.97641 1.22064 0.90122 0.96484 0.86269 0.87832 1.86543 1.85754 1.23374 1.40967 1.21414 0.90691 0.98422 0.90201 1.42380 1.06958 1.77584 1.11207 1.19633 0.87291 1.34313 0.96938 0.90748 1.25563 1.02464 1.02797 0.95766 1.69819 1.36477 1.52974 1.02338 0.85152 0.80199 0.77917 0.76537 1.21399 1.22130 1.19551 1.21950 0.97107 0.99614 0.97448 1.22116 0.90026 1.03830 0.85889 0.93748 0.89528 0.92968 0.85855 0.94026 0.91407 0.89169 0.89217 0.90953 0.90543 0.93289 0.85383 0.74621 0.91028 0.91322 0.76699 0.95401 0.95112 0.78951 0.93963 0.92018 0.87472 0.88250 0.86814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 8.72 71.99 0.63 -0.93 16 2 C -0.11 -1.17 2.42 -11.54 -0.03 -1.20 16 3 C -0.14 -1.31 9.09 71.98 0.65 -0.66 16 4 C 0.51 9.01 6.80 87.66 0.60 9.61 16 5 O -0.59 -15.95 15.53 -3.03 -0.05 -16.00 16 6 N -0.61 -8.02 2.97 -818.89 -2.43 -10.46 16 7 C 0.11 1.67 6.42 86.36 0.55 2.22 16 8 C -0.11 -1.71 4.65 30.67 0.14 -1.57 16 9 C -0.10 -1.22 2.49 -11.51 -0.03 -1.25 16 10 C 0.51 10.45 7.15 87.66 0.63 11.08 16 11 O -0.59 -17.68 15.98 -3.03 -0.05 -17.73 16 12 N -0.71 -12.71 5.39 -463.05 -2.49 -15.21 16 13 C 0.10 2.30 5.31 86.38 0.46 2.76 16 14 C 0.11 2.97 3.09 30.60 0.09 3.07 16 15 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 16 O -0.56 -15.33 13.03 -148.98 -1.94 -17.27 16 17 C 0.12 4.36 5.92 86.38 0.51 4.87 16 18 N -0.74 -36.07 5.49 -343.45 -1.89 -37.96 16 19 C -0.25 -13.70 9.99 84.04 0.84 -12.86 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 22 N -0.97 -58.26 13.06 21.65 0.28 -57.98 16 23 Si 0.97 45.42 29.55 68.60 2.03 47.45 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 27 C -0.12 -1.00 5.27 30.67 0.16 -0.83 16 28 C 0.10 0.59 6.25 86.36 0.54 1.13 16 29 H 0.04 0.71 7.87 -2.39 -0.02 0.69 16 30 H 0.09 0.58 8.14 -2.38 -0.02 0.56 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.12 0.54 6.29 -2.39 -0.02 0.52 16 33 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.55 7.84 -2.38 -0.02 0.53 16 35 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.42 7.04 -2.39 -0.02 1.40 16 38 H 0.08 1.35 8.07 -2.39 -0.02 1.33 16 39 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 40 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.42 5.55 7.87 -92.70 -0.73 4.82 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.38 8.71 9.05 -74.06 -0.67 8.04 16 45 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.38 19.92 7.54 -92.71 -0.70 19.22 16 48 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 49 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.11 0.49 7.53 -2.39 -0.02 0.48 16 51 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 52 H 0.11 0.24 5.14 -2.38 -0.01 0.23 16 Total: -1.00 -79.43 415.74 -1.49 -80.91 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: -1.16 Total: 32.47 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: 6.22 Total: 11.76 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -6.53 Total: -121.60 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -2.04 Total: -50.99 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -79.43 -1.49 -80.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716097081.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.851 kcal (2) G-P(sol) polarization free energy of solvation -79.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds