Wall clock time and date at job start Wed Apr 1 2020 00:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 H 1.08997 * 109.46907 * 55.00177 * 3 2 1 5 5 C 1.53006 * 109.46850 * 295.00585 * 3 2 1 6 6 C 1.53000 * 109.47213 * 175.00564 * 3 2 1 7 7 H 1.08998 * 109.47218 * 180.02562 * 6 3 2 8 8 N 1.46496 * 109.47150 * 59.99732 * 6 3 2 9 9 C 1.34777 * 120.00147 * 85.00220 * 8 6 3 10 10 C 1.50699 * 120.00517 * 179.97438 * 9 8 6 11 11 O 1.21288 * 119.99652 * 0.02562 * 9 8 6 12 12 C 1.50706 * 109.46798 * 299.99945 * 6 3 2 13 13 O 1.21283 * 119.99663 * 120.00255 * 12 6 3 14 14 N 1.34771 * 119.99886 * 300.00029 * 12 6 3 15 15 C 1.46501 * 120.00100 * 180.02562 * 14 12 6 16 16 C 1.52997 * 109.47235 * 180.02562 * 15 14 12 17 17 O 1.42900 * 110.88470 * 297.56617 * 16 15 14 18 18 C 1.55155 * 111.00265 * 173.64834 * 16 15 14 19 19 C 1.54327 * 102.94179 * 206.41934 * 18 16 15 20 20 N 1.47025 * 107.26836 * 22.19466 * 19 18 16 21 21 C 1.36936 * 125.64373 * 181.09909 * 20 19 18 22 22 H 1.08004 * 119.99558 * 173.81018 * 21 20 19 23 23 C 1.38809 * 120.00169 * 353.80357 * 21 20 19 24 24 N 1.31621 * 120.00234 * 6.81392 * 23 21 20 25 25 Si 1.86806 * 119.99786 * 186.81268 * 23 21 20 26 26 H 1.48507 * 109.47040 * 94.98808 * 25 23 21 27 27 H 1.48500 * 109.46925 * 214.98391 * 25 23 21 28 28 H 1.48497 * 109.47365 * 334.98954 * 25 23 21 29 29 C 1.47419 * 108.70527 * 1.05412 * 20 19 18 30 30 H 1.09005 * 109.46722 * 299.99607 * 1 2 3 31 31 H 1.08995 * 109.46797 * 180.02562 * 1 2 3 32 32 H 1.08989 * 109.47589 * 59.99634 * 1 2 3 33 33 H 1.09001 * 109.47648 * 119.99905 * 2 1 3 34 34 H 1.09005 * 109.46722 * 240.00393 * 2 1 3 35 35 H 1.08997 * 109.47301 * 59.99920 * 5 3 2 36 36 H 1.08998 * 109.46758 * 179.97438 * 5 3 2 37 37 H 1.09007 * 109.47071 * 299.99533 * 5 3 2 38 38 H 0.97002 * 120.00270 * 265.00373 * 8 6 3 39 39 H 1.09007 * 109.46817 * 60.00111 * 10 9 8 40 40 H 1.08999 * 109.47215 * 179.97438 * 10 9 8 41 41 H 1.08994 * 109.47088 * 300.00553 * 10 9 8 42 42 H 0.97006 * 120.00195 * 0.02562 * 14 12 6 43 43 H 1.09008 * 109.46684 * 299.99623 * 15 14 12 44 44 H 1.08997 * 109.47182 * 59.99609 * 15 14 12 45 45 H 0.96703 * 113.99733 * 59.29929 * 17 16 15 46 46 H 1.09004 * 110.72273 * 324.78226 * 18 16 15 47 47 H 1.09004 * 110.72438 * 88.05702 * 18 16 15 48 48 H 1.08997 * 109.88081 * 262.77483 * 19 18 16 49 49 H 1.09002 * 109.87869 * 141.60760 * 19 18 16 50 50 H 0.96999 * 120.00149 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.36871 * 217.03134 * 29 20 19 52 52 H 1.09001 * 110.36211 * 94.70926 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5648 1.4444 0.1256 7 1 3.9281 2.4721 0.1260 8 7 4.1489 0.7200 -1.0059 9 6 4.3733 1.3584 -2.1714 10 6 4.9746 0.6134 -3.3352 11 8 4.0921 2.5330 -2.2833 12 6 3.9636 0.7706 1.4133 13 8 4.6665 -0.2174 1.3883 14 7 3.5391 1.2660 2.5926 15 6 3.9272 0.6114 3.8444 16 6 3.3165 1.3675 5.0260 17 8 3.8158 2.7050 5.0877 18 6 3.5717 0.6158 6.3590 19 6 2.3950 1.0751 7.2457 20 7 1.3244 1.5322 6.3476 21 6 0.1149 2.0393 6.7413 22 1 -0.5671 2.4411 6.0065 23 6 -0.2347 2.0369 8.0846 24 7 0.6454 1.6728 8.9931 25 14 -1.9543 2.5504 8.6031 26 1 -2.8100 1.3447 8.7429 27 1 -1.8869 3.2630 9.9042 28 1 -2.5332 3.4515 7.5745 29 6 1.7692 1.3553 4.9533 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 -0.8898 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 0.5488 2.1253 -1.3968 36 1 1.9980 3.1544 -1.3071 37 1 2.0697 1.5876 -2.1493 38 1 4.3741 -0.2193 -0.9162 39 1 4.3238 -0.2165 -3.6106 40 1 5.0800 1.2892 -4.1839 41 1 5.9545 0.2285 -3.0529 42 1 2.9766 2.0561 2.6125 43 1 3.5641 -0.4165 3.8446 44 1 5.0135 0.6131 3.9338 45 1 3.6356 3.2290 4.2952 46 1 3.5408 -0.4630 6.2055 47 1 4.5240 0.9171 6.7956 48 1 2.7140 1.8946 7.8896 49 1 2.0400 0.2413 7.8514 50 1 0.4010 1.6707 9.9318 51 1 1.4119 2.1778 4.3338 52 1 1.4155 0.4020 4.5604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716928865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:22 Heat of formation + Delta-G solvation = -106.398002 kcal Electronic energy + Delta-G solvation = -31798.692089 eV Core-core repulsion = 27605.690155 eV Total energy + Delta-G solvation = -4193.001933 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.00746 -39.53145 -38.49346 -36.73724 -35.20997 -34.38325 -33.84646 -32.16743 -31.09916 -29.74025 -29.38127 -28.60937 -27.13564 -25.56530 -24.11076 -23.41605 -21.41834 -21.07058 -20.18928 -19.99039 -19.64570 -18.28407 -17.11429 -16.94137 -16.42942 -16.39878 -15.85959 -15.46339 -15.29034 -14.87524 -14.73586 -14.44540 -14.29678 -13.97816 -13.81891 -13.77856 -13.32764 -12.95106 -12.91423 -12.88372 -12.65999 -12.53734 -12.29858 -12.09615 -11.96112 -11.75186 -11.71933 -11.39940 -11.04833 -10.91779 -10.89953 -10.87310 -10.77310 -10.40727 -10.28175 -10.15177 -10.13696 -9.93787 -9.77889 -9.48789 -9.32442 -9.21522 -8.60304 -6.86182 -5.75742 -3.08627 2.30160 2.38692 2.61717 3.20114 3.37860 3.42790 3.45234 4.28198 4.40593 4.43822 4.44615 4.53868 4.58646 4.76961 4.85338 4.92651 5.02621 5.08112 5.14640 5.25555 5.26878 5.31404 5.38767 5.45915 5.48439 5.50685 5.61528 5.74535 5.75563 5.82955 5.86943 5.88593 5.92641 6.05465 6.12098 6.15719 6.18489 6.23284 6.31260 6.38350 6.49253 6.55919 7.20299 7.22206 7.52049 7.59366 7.79717 7.89446 7.93448 7.96202 8.21853 9.17220 9.77623 10.42959 11.36371 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.002749 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.746320 B =10184.484124 C =11170.655312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.099 4.099 4 H 0.085 0.915 5 C -0.137 4.137 6 C 0.130 3.870 7 H 0.114 0.886 8 N -0.710 5.710 9 C 0.513 3.487 10 C -0.174 4.174 11 O -0.542 6.542 12 C 0.515 3.485 13 O -0.539 6.539 14 N -0.719 5.719 15 C 0.105 3.895 16 C 0.101 3.899 17 O -0.536 6.536 18 C -0.128 4.128 19 C 0.181 3.819 20 N -0.598 5.598 21 C -0.231 4.231 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.911 3.089 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.281 1.281 29 C 0.119 3.881 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.410 0.590 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.401 0.599 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.363 0.637 46 H 0.073 0.927 47 H 0.072 0.928 48 H 0.047 0.953 49 H 0.047 0.953 50 H 0.253 0.747 51 H 0.037 0.963 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.923 -3.860 -22.126 23.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.119 4.119 4 H 0.103 0.897 5 C -0.194 4.194 6 C 0.021 3.979 7 H 0.132 0.868 8 N -0.364 5.364 9 C 0.301 3.699 10 C -0.233 4.233 11 O -0.419 6.419 12 C 0.300 3.700 13 O -0.416 6.416 14 N -0.371 5.371 15 C -0.019 4.019 16 C 0.059 3.941 17 O -0.340 6.340 18 C -0.167 4.167 19 C 0.056 3.944 20 N -0.324 5.324 21 C -0.359 4.359 22 H 0.095 0.905 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.741 3.259 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.206 1.206 29 C -0.008 4.008 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.247 0.753 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.107 0.893 42 H 0.236 0.764 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.209 0.791 46 H 0.091 0.909 47 H 0.091 0.909 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.063 0.937 51 H 0.055 0.945 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 7.321 -3.899 -21.392 22.944 hybrid contribution -1.237 0.315 -0.051 1.277 sum 6.084 -3.584 -21.443 22.576 Atomic orbital electron populations 1.21798 0.95237 1.01800 1.02148 1.21568 0.96551 0.95427 1.02106 1.21607 0.92100 0.97744 1.00430 0.89676 1.21888 1.00678 1.01034 0.95841 1.20902 0.94672 0.97852 0.84447 0.86818 1.45742 1.64269 1.15029 1.11352 1.20741 0.77702 0.87642 0.83863 1.21911 1.02419 1.02165 0.96842 1.90742 1.51649 1.16388 1.83124 1.20468 0.79785 0.84498 0.85221 1.90697 1.37684 1.25956 1.87254 1.45927 1.52963 1.32293 1.05897 1.22087 1.00564 0.97423 0.81867 1.22734 0.94317 0.82746 0.94329 1.86654 1.80723 1.23314 1.43329 1.22909 1.01665 0.98210 0.93866 1.21153 0.84205 0.98517 0.90506 1.44337 1.15093 1.74297 0.98646 1.19013 0.91486 1.33401 0.92034 0.90524 1.24822 0.98133 1.01491 0.95756 1.69972 1.32599 1.53637 1.00263 0.86119 0.83965 0.77875 0.77914 1.21598 1.21725 1.20635 1.22109 0.90876 0.98221 0.89639 0.92278 0.92742 0.92530 0.91906 0.91930 0.92648 0.91692 0.92716 0.75336 0.89389 0.88872 0.89276 0.76408 0.90228 0.90637 0.79077 0.90886 0.90923 0.93493 0.93444 0.93674 0.94488 0.95580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.67 37.16 0.36 -0.99 16 2 C -0.12 -1.07 5.02 -26.73 -0.13 -1.21 16 3 C -0.10 -0.87 2.17 -90.61 -0.20 -1.07 16 4 H 0.09 0.72 7.56 -51.93 -0.39 0.33 16 5 C -0.14 -1.27 7.47 37.16 0.28 -0.99 16 6 C 0.13 1.23 2.42 -69.08 -0.17 1.07 16 7 H 0.11 1.12 7.58 -51.93 -0.39 0.73 16 8 N -0.71 -6.14 4.17 -54.93 -0.23 -6.37 16 9 C 0.51 4.63 6.29 -10.99 -0.07 4.56 16 10 C -0.17 -0.92 10.32 36.01 0.37 -0.55 16 11 O -0.54 -6.72 14.21 5.55 0.08 -6.64 16 12 C 0.52 5.80 5.88 -10.98 -0.06 5.74 16 13 O -0.54 -7.56 15.84 5.55 0.09 -7.47 16 14 N -0.72 -7.78 5.06 -60.29 -0.31 -8.09 16 15 C 0.10 1.37 4.90 -4.04 -0.02 1.35 16 16 C 0.10 1.62 0.95 -88.48 -0.08 1.54 16 17 O -0.54 -8.85 13.19 -35.23 -0.46 -9.32 16 18 C -0.13 -2.32 6.16 -24.90 -0.15 -2.48 16 19 C 0.18 4.34 5.38 -3.06 -0.02 4.32 16 20 N -0.60 -14.79 3.39 -170.08 -0.58 -15.36 16 21 C -0.23 -6.32 10.26 -15.06 -0.15 -6.47 16 22 H 0.08 2.01 7.84 -52.48 -0.41 1.60 16 23 C -0.01 -0.15 5.48 -17.43 -0.10 -0.24 16 24 N -0.92 -26.81 10.36 55.49 0.58 -26.23 16 25 Si 0.91 21.87 29.56 -169.99 -5.02 16.85 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C 0.12 2.23 5.93 -2.53 -0.02 2.22 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.46 6.56 -51.94 -0.34 0.12 16 33 H 0.06 0.66 7.05 -51.93 -0.37 0.29 16 34 H 0.06 0.54 7.76 -51.93 -0.40 0.13 16 35 H 0.05 0.48 6.56 -51.93 -0.34 0.14 16 36 H 0.06 0.67 7.53 -51.93 -0.39 0.28 16 37 H 0.05 0.53 5.78 -51.93 -0.30 0.23 16 38 H 0.41 3.28 7.79 -40.82 -0.32 2.96 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.50 8.12 -51.93 -0.42 0.08 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.40 3.70 6.71 -40.82 -0.27 3.43 16 43 H 0.08 1.08 8.11 -51.92 -0.42 0.66 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.36 4.48 8.16 45.56 0.37 4.85 16 46 H 0.07 1.19 8.01 -51.93 -0.42 0.77 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.05 1.28 7.55 -51.93 -0.39 0.89 16 49 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 50 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 51 H 0.04 0.65 7.97 -51.93 -0.41 0.24 16 52 H 0.03 0.50 8.04 -51.93 -0.42 0.08 16 LS Contribution 404.61 15.07 6.10 6.10 Total: -1.00 -34.10 404.61 -8.02 -42.12 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -8.10 Total: 7.64 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -0.16 Total: 6.79 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.54 Total: -56.06 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.30 Total: -23.44 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.10 -8.02 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716928865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.281 kcal (2) G-P(sol) polarization free energy of solvation -34.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds