Wall clock time and date at job start Wed Apr 1 2020 00:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.47007 * 2 1 4 4 H 1.08997 * 109.46907 * 55.00177 * 3 2 1 5 5 C 1.53006 * 109.46850 * 295.00585 * 3 2 1 6 6 C 1.53000 * 109.47213 * 175.00564 * 3 2 1 7 7 H 1.08998 * 109.47218 * 180.02562 * 6 3 2 8 8 N 1.46496 * 109.47150 * 59.99732 * 6 3 2 9 9 C 1.34777 * 120.00147 * 85.00220 * 8 6 3 10 10 C 1.50699 * 120.00517 * 179.97438 * 9 8 6 11 11 O 1.21288 * 119.99652 * 0.02562 * 9 8 6 12 12 C 1.50706 * 109.46798 * 299.99945 * 6 3 2 13 13 O 1.21283 * 119.99663 * 120.00255 * 12 6 3 14 14 N 1.34771 * 119.99886 * 300.00029 * 12 6 3 15 15 C 1.46501 * 120.00100 * 180.02562 * 14 12 6 16 16 C 1.52997 * 109.47235 * 180.02562 * 15 14 12 17 17 O 1.42900 * 110.88470 * 297.56617 * 16 15 14 18 18 C 1.55155 * 111.00265 * 173.64834 * 16 15 14 19 19 C 1.54327 * 102.94179 * 206.41934 * 18 16 15 20 20 N 1.47025 * 107.26836 * 22.19466 * 19 18 16 21 21 C 1.36936 * 125.64373 * 181.09909 * 20 19 18 22 22 H 1.08004 * 119.99558 * 173.81018 * 21 20 19 23 23 C 1.38809 * 120.00169 * 353.80357 * 21 20 19 24 24 N 1.31621 * 120.00234 * 6.81392 * 23 21 20 25 25 Si 1.86806 * 119.99786 * 186.81268 * 23 21 20 26 26 H 1.48507 * 109.47040 * 94.98808 * 25 23 21 27 27 H 1.48500 * 109.46925 * 214.98391 * 25 23 21 28 28 H 1.48497 * 109.47365 * 334.98954 * 25 23 21 29 29 C 1.47419 * 108.70527 * 1.05412 * 20 19 18 30 30 H 1.09005 * 109.46722 * 299.99607 * 1 2 3 31 31 H 1.08995 * 109.46797 * 180.02562 * 1 2 3 32 32 H 1.08989 * 109.47589 * 59.99634 * 1 2 3 33 33 H 1.09001 * 109.47648 * 119.99905 * 2 1 3 34 34 H 1.09005 * 109.46722 * 240.00393 * 2 1 3 35 35 H 1.08997 * 109.47301 * 59.99920 * 5 3 2 36 36 H 1.08998 * 109.46758 * 179.97438 * 5 3 2 37 37 H 1.09007 * 109.47071 * 299.99533 * 5 3 2 38 38 H 0.97002 * 120.00270 * 265.00373 * 8 6 3 39 39 H 1.09007 * 109.46817 * 60.00111 * 10 9 8 40 40 H 1.08999 * 109.47215 * 179.97438 * 10 9 8 41 41 H 1.08994 * 109.47088 * 300.00553 * 10 9 8 42 42 H 0.97006 * 120.00195 * 0.02562 * 14 12 6 43 43 H 1.09008 * 109.46684 * 299.99623 * 15 14 12 44 44 H 1.08997 * 109.47182 * 59.99609 * 15 14 12 45 45 H 0.96703 * 113.99733 * 59.29929 * 17 16 15 46 46 H 1.09004 * 110.72273 * 324.78226 * 18 16 15 47 47 H 1.09004 * 110.72438 * 88.05702 * 18 16 15 48 48 H 1.08997 * 109.88081 * 262.77483 * 19 18 16 49 49 H 1.09002 * 109.87869 * 141.60760 * 19 18 16 50 50 H 0.96999 * 120.00149 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.36871 * 217.03134 * 29 20 19 52 52 H 1.09001 * 110.36211 * 94.70926 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6351 2.1266 -1.3074 6 6 3.5648 1.4444 0.1256 7 1 3.9281 2.4721 0.1260 8 7 4.1489 0.7200 -1.0059 9 6 4.3733 1.3584 -2.1714 10 6 4.9746 0.6134 -3.3352 11 8 4.0921 2.5330 -2.2833 12 6 3.9636 0.7706 1.4133 13 8 4.6665 -0.2174 1.3883 14 7 3.5391 1.2660 2.5926 15 6 3.9272 0.6114 3.8444 16 6 3.3165 1.3675 5.0260 17 8 3.8158 2.7050 5.0877 18 6 3.5717 0.6158 6.3590 19 6 2.3950 1.0751 7.2457 20 7 1.3244 1.5322 6.3476 21 6 0.1149 2.0393 6.7413 22 1 -0.5671 2.4411 6.0065 23 6 -0.2347 2.0369 8.0846 24 7 0.6454 1.6728 8.9931 25 14 -1.9543 2.5504 8.6031 26 1 -2.8100 1.3447 8.7429 27 1 -1.8869 3.2630 9.9042 28 1 -2.5332 3.4515 7.5745 29 6 1.7692 1.3553 4.9533 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5138 -0.8898 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8901 35 1 0.5488 2.1253 -1.3968 36 1 1.9980 3.1544 -1.3071 37 1 2.0697 1.5876 -2.1493 38 1 4.3741 -0.2193 -0.9162 39 1 4.3238 -0.2165 -3.6106 40 1 5.0800 1.2892 -4.1839 41 1 5.9545 0.2285 -3.0529 42 1 2.9766 2.0561 2.6125 43 1 3.5641 -0.4165 3.8446 44 1 5.0135 0.6131 3.9338 45 1 3.6356 3.2290 4.2952 46 1 3.5408 -0.4630 6.2055 47 1 4.5240 0.9171 6.7956 48 1 2.7140 1.8946 7.8896 49 1 2.0400 0.2413 7.8514 50 1 0.4010 1.6707 9.9318 51 1 1.4119 2.1778 4.3338 52 1 1.4155 0.4020 4.5604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716928865.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:21 Heat of formation + Delta-G solvation = -133.072144 kcal Electronic energy + Delta-G solvation = -31799.848766 eV Core-core repulsion = 27605.690155 eV Total energy + Delta-G solvation = -4194.158611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.85476 -40.57123 -39.71634 -37.53877 -36.78224 -35.44954 -34.63706 -34.01106 -31.86460 -31.32554 -30.01377 -29.94382 -28.23566 -27.13360 -25.28175 -24.56313 -22.47406 -22.04652 -21.54925 -21.37861 -20.44039 -19.24715 -18.81442 -17.95090 -17.48109 -17.28178 -16.76609 -16.71486 -16.37258 -16.27483 -15.81157 -15.62902 -15.57943 -15.12859 -15.03864 -14.66171 -14.46149 -14.28471 -13.89197 -13.76403 -13.56018 -13.36848 -13.30158 -13.24480 -13.07159 -12.93655 -12.82330 -12.78522 -12.43897 -12.35187 -12.13427 -12.08818 -12.01118 -11.78289 -11.74889 -11.61180 -11.59391 -11.00884 -10.90994 -10.85270 -10.67143 -10.23904 -10.04913 -8.87103 -7.85666 -5.19791 1.44020 1.46156 1.47738 1.56465 1.63908 1.81948 2.43116 2.49249 3.17987 3.33961 3.40722 3.50305 3.66561 3.67596 3.84041 3.93201 3.96794 3.98381 4.08374 4.38514 4.48881 4.53127 4.54150 4.58184 4.59926 4.65514 4.68473 4.69632 4.76614 4.82574 4.93880 4.96814 5.01784 5.08230 5.09065 5.11873 5.17224 5.19275 5.25252 5.35237 5.44299 5.46234 5.50322 5.64729 5.75960 6.19592 6.32556 6.55175 6.81205 7.02602 7.09753 7.26388 7.77520 8.41744 9.25594 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016202 B = 0.002749 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.746320 B =10184.484124 C =11170.655312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 C -0.094 4.094 4 H 0.091 0.909 5 C -0.129 4.129 6 C 0.136 3.864 7 H 0.112 0.888 8 N -0.706 5.706 9 C 0.509 3.491 10 C -0.168 4.168 11 O -0.580 6.580 12 C 0.521 3.479 13 O -0.564 6.564 14 N -0.711 5.711 15 C 0.121 3.879 16 C 0.121 3.879 17 O -0.554 6.554 18 C -0.121 4.121 19 C 0.189 3.811 20 N -0.620 5.620 21 C -0.239 4.239 22 H 0.085 0.915 23 C -0.067 4.067 24 N -0.951 5.951 25 Si 0.976 3.024 26 H -0.288 1.288 27 H -0.298 1.298 28 H -0.265 1.265 29 C 0.115 3.885 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.415 0.585 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.104 0.896 42 H 0.410 0.590 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.383 0.617 46 H 0.096 0.904 47 H 0.081 0.919 48 H 0.002 0.998 49 H 0.012 0.988 50 H 0.246 0.754 51 H 0.054 0.946 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 -4.216 -24.584 25.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.114 4.114 4 H 0.109 0.891 5 C -0.187 4.187 6 C 0.026 3.974 7 H 0.129 0.871 8 N -0.360 5.360 9 C 0.299 3.701 10 C -0.227 4.227 11 O -0.460 6.460 12 C 0.307 3.693 13 O -0.443 6.443 14 N -0.364 5.364 15 C -0.003 4.003 16 C 0.078 3.922 17 O -0.361 6.361 18 C -0.159 4.159 19 C 0.064 3.936 20 N -0.346 5.346 21 C -0.368 4.368 22 H 0.103 0.897 23 C -0.260 4.260 24 N -0.600 5.600 25 Si 0.804 3.196 26 H -0.215 1.215 27 H -0.225 1.225 28 H -0.190 1.190 29 C -0.011 4.011 30 H 0.070 0.930 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.068 0.932 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.252 0.748 39 H 0.127 0.873 40 H 0.111 0.889 41 H 0.123 0.877 42 H 0.247 0.753 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.231 0.769 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.020 0.980 49 H 0.030 0.970 50 H 0.055 0.945 51 H 0.072 0.928 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.310 -4.252 -23.911 25.363 hybrid contribution -1.217 0.440 0.662 1.454 sum 6.093 -3.812 -23.249 24.335 Atomic orbital electron populations 1.21786 0.95031 1.01924 1.02123 1.21512 0.96651 0.95265 1.01717 1.21579 0.91553 0.97752 1.00502 0.89066 1.21794 1.00975 1.00140 0.95754 1.20826 0.95120 0.97543 0.83864 0.87058 1.45768 1.63942 1.15179 1.11093 1.21405 0.76927 0.87338 0.84468 1.21933 1.03334 1.02346 0.95091 1.90729 1.53359 1.18122 1.83742 1.20679 0.79065 0.83994 0.85566 1.90692 1.38843 1.27132 1.87591 1.45790 1.52991 1.32453 1.05171 1.21762 1.00373 0.96888 0.81320 1.22427 0.92398 0.82969 0.94370 1.86621 1.80638 1.23723 1.45088 1.22792 0.99278 0.99858 0.93999 1.20842 0.86133 0.95625 0.91039 1.44627 1.14684 1.74044 1.01289 1.19447 0.92601 1.32433 0.92310 0.89691 1.25670 1.01721 1.02573 0.96080 1.70202 1.34300 1.55458 1.00034 0.85094 0.79660 0.77524 0.77283 1.21463 1.22487 1.18976 1.22340 0.92850 0.99072 0.86829 0.93015 0.92598 0.91807 0.93201 0.91363 0.91943 0.92979 0.93228 0.74753 0.87303 0.88903 0.87703 0.75289 0.90097 0.90296 0.76858 0.88583 0.90036 0.97977 0.96972 0.94490 0.92818 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.67 71.98 0.70 -1.69 16 2 C -0.11 -1.83 5.02 30.60 0.15 -1.67 16 3 C -0.09 -1.48 2.17 -10.79 -0.02 -1.50 16 4 H 0.09 1.33 7.56 -2.39 -0.02 1.31 16 5 C -0.13 -2.20 7.47 71.98 0.54 -1.66 16 6 C 0.14 2.32 2.42 44.25 0.11 2.43 16 7 H 0.11 2.03 7.58 -2.39 -0.02 2.01 16 8 N -0.71 -10.92 4.17 -446.09 -1.86 -12.78 16 9 C 0.51 8.35 6.29 87.66 0.55 8.90 16 10 C -0.17 -1.39 10.32 71.24 0.74 -0.65 16 11 O -0.58 -13.83 14.21 -3.06 -0.04 -13.87 16 12 C 0.52 10.60 5.88 87.66 0.52 11.12 16 13 O -0.56 -14.62 15.84 -3.04 -0.05 -14.67 16 14 N -0.71 -13.60 5.06 -463.05 -2.34 -15.94 16 15 C 0.12 2.86 4.90 86.38 0.42 3.28 16 16 C 0.12 3.65 0.95 -9.40 -0.01 3.64 16 17 O -0.55 -17.23 13.19 -148.98 -1.96 -19.20 16 18 C -0.12 -4.29 6.16 31.78 0.20 -4.09 16 19 C 0.19 9.32 5.38 86.73 0.47 9.79 16 20 N -0.62 -30.79 3.39 -692.00 -2.35 -33.14 16 21 C -0.24 -13.10 10.26 84.03 0.86 -12.24 16 22 H 0.09 4.39 7.84 -2.91 -0.02 4.37 16 23 C -0.07 -3.83 5.48 84.86 0.47 -3.36 16 24 N -0.95 -57.66 10.36 21.65 0.22 -57.43 16 25 Si 0.98 45.50 29.56 68.60 2.03 47.52 16 26 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 27 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 29 C 0.11 4.12 5.93 86.86 0.51 4.64 16 30 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.91 6.56 -2.39 -0.02 0.89 16 33 H 0.05 0.95 7.05 -2.39 -0.02 0.93 16 34 H 0.07 1.02 7.76 -2.38 -0.02 1.00 16 35 H 0.06 0.96 6.56 -2.39 -0.02 0.94 16 36 H 0.05 1.03 7.53 -2.39 -0.02 1.01 16 37 H 0.05 0.89 5.78 -2.38 -0.01 0.88 16 38 H 0.41 5.76 7.79 -92.71 -0.72 5.04 16 39 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 40 H 0.09 0.81 8.12 -2.39 -0.02 0.79 16 41 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.41 6.43 6.71 -92.70 -0.62 5.81 16 43 H 0.08 1.96 8.11 -2.38 -0.02 1.94 16 44 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.38 8.46 8.16 -74.06 -0.60 7.85 16 46 H 0.10 2.97 8.01 -2.38 -0.02 2.95 16 47 H 0.08 2.75 8.14 -2.38 -0.02 2.74 16 48 H 0.00 0.11 7.55 -2.39 -0.02 0.09 16 49 H 0.01 0.67 7.37 -2.39 -0.02 0.65 16 50 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 51 H 0.05 1.76 7.97 -2.39 -0.02 1.74 16 52 H 0.04 1.26 8.04 -2.39 -0.02 1.24 16 Total: -1.00 -75.65 404.61 -1.17 -76.82 By element: Atomic # 1 Polarization: 26.77 SS G_CDS: -1.00 Total: 25.76 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 6.19 Total: 16.93 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -6.33 Total: -119.30 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -2.06 Total: -47.74 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -75.65 -1.17 -76.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716928865.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.248 kcal (2) G-P(sol) polarization free energy of solvation -75.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds