Wall clock time and date at job start Wed Apr 1 2020 00:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 C 1.50704 * 109.47316 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99725 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00035 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.63369 * 6.10612 * 6 4 3 8 8 C 1.53193 * 108.77938 * 233.58788 * 7 6 4 9 9 C 1.53036 * 109.31410 * 305.36793 * 8 7 6 10 10 C 1.53049 * 109.53817 * 61.36145 * 9 8 7 11 11 C 1.46929 * 120.62544 * 186.09175 * 6 4 3 12 12 H 1.09001 * 109.58501 * 246.33743 * 11 6 4 13 13 C 1.50696 * 109.59019 * 6.62125 * 11 6 4 14 14 O 1.21283 * 119.99831 * 61.43466 * 13 11 6 15 15 N 1.34772 * 120.00032 * 241.43230 * 13 11 6 16 16 C 1.46502 * 119.99859 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.46949 * 180.02562 * 16 15 13 18 18 H 1.09005 * 109.47383 * 65.00514 * 17 16 15 19 19 C 1.53005 * 109.47134 * 184.99855 * 17 16 15 20 20 O 1.42898 * 109.46810 * 55.00240 * 19 17 16 21 21 N 1.46492 * 109.47527 * 305.00243 * 17 16 15 22 22 C 1.36933 * 120.00514 * 155.00088 * 21 17 16 23 23 H 1.07998 * 119.99635 * 359.97438 * 22 21 17 24 24 C 1.38808 * 120.00529 * 179.97438 * 22 21 17 25 25 N 1.31618 * 120.00418 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99939 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47025 * 89.99807 * 26 24 22 28 28 H 1.48500 * 109.47260 * 209.99908 * 26 24 22 29 29 H 1.48504 * 109.46963 * 329.99646 * 26 24 22 30 30 H 1.09002 * 109.46712 * 300.00155 * 1 2 3 31 31 H 1.09004 * 109.46978 * 59.99549 * 1 2 3 32 32 H 1.08997 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47266 * 240.00303 * 2 1 3 34 34 H 1.08994 * 109.46936 * 119.99914 * 2 1 3 35 35 H 1.09002 * 109.47465 * 60.00306 * 3 2 1 36 36 H 1.09004 * 109.47573 * 300.00086 * 3 2 1 37 37 H 1.09004 * 109.58627 * 353.38139 * 7 6 4 38 38 H 1.09001 * 109.58496 * 113.79998 * 7 6 4 39 39 H 1.09007 * 109.49375 * 65.31612 * 8 7 6 40 40 H 1.08998 * 109.49576 * 185.37832 * 8 7 6 41 41 H 1.08996 * 109.46408 * 181.38421 * 9 8 7 42 42 H 1.09005 * 109.46024 * 301.34672 * 9 8 7 43 43 H 1.08998 * 109.49671 * 178.68222 * 10 9 8 44 44 H 1.08999 * 109.49466 * 58.59142 * 10 9 8 45 45 H 0.96995 * 120.00214 * 0.02562 * 15 13 11 46 46 H 1.08993 * 109.47054 * 60.00401 * 16 15 13 47 47 H 1.08998 * 109.47051 * 300.00106 * 16 15 13 48 48 H 1.08996 * 109.47314 * 174.99915 * 19 17 16 49 49 H 1.09000 * 109.47125 * 295.00553 * 19 17 16 50 50 H 0.96702 * 114.00412 * 179.97438 * 20 19 17 51 51 H 0.97003 * 119.99831 * 334.99971 * 21 17 16 52 52 H 0.97005 * 120.00361 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6097 0.0013 7 6 3.5065 3.8865 0.1358 8 6 3.9078 4.8010 -1.0259 9 6 5.4319 4.9343 -1.0619 10 6 6.0609 3.5580 -1.2910 11 6 5.6839 2.6294 -0.1323 12 1 6.1303 2.9957 0.7922 13 6 6.1841 1.2368 -0.4176 14 8 5.8290 0.6592 -1.4233 15 7 7.0258 0.6332 0.4446 16 6 7.5116 -0.7208 0.1674 17 6 8.4444 -1.1687 1.2944 18 1 7.8795 -1.2495 2.2232 19 6 9.0491 -2.5301 0.9453 20 8 9.6911 -2.4534 -0.3290 21 7 9.5177 -0.1855 1.4597 22 6 10.1557 -0.0643 2.6653 23 1 9.8672 -0.6934 3.4945 24 6 11.1731 0.8669 2.8218 25 7 11.7859 0.9837 3.9808 26 14 11.6716 1.9554 1.3879 27 1 10.8649 3.2020 1.4090 28 1 13.1124 2.2962 1.5026 29 1 11.4337 1.2334 0.1122 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 2.4315 3.7086 0.1064 38 1 3.7751 4.3576 1.0813 39 1 3.5579 4.3714 -1.9646 40 1 3.4592 5.7845 -0.8863 41 1 5.7189 5.6041 -1.8724 42 1 5.7834 5.3408 -0.1135 43 1 7.1452 3.6571 -1.3399 44 1 5.6907 3.1402 -2.2272 45 1 7.3095 1.0950 1.2490 46 1 8.0546 -0.7257 -0.7776 47 1 6.6651 -1.4045 0.1036 48 1 9.7803 -2.8083 1.7043 49 1 8.2591 -3.2802 0.9096 50 1 10.0981 -3.2827 -0.6150 51 1 9.7766 0.3797 0.7151 52 1 12.4966 1.6347 4.0902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717784921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:36 Heat of formation + Delta-G solvation = -112.110317 kcal Electronic energy + Delta-G solvation = -31984.017015 eV Core-core repulsion = 27790.767377 eV Total energy + Delta-G solvation = -4193.249638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92342 -38.55994 -37.58552 -36.99982 -34.88668 -34.51504 -33.36329 -33.06676 -31.82755 -31.22200 -28.81236 -28.29188 -26.09028 -24.93581 -23.73450 -23.15248 -22.29490 -20.80028 -20.22683 -20.03536 -18.94367 -17.88557 -17.34382 -16.81063 -16.42810 -16.27595 -15.83088 -15.46133 -14.88069 -14.68124 -14.65939 -14.26337 -14.19575 -13.99988 -13.87317 -13.50347 -13.41811 -13.23538 -13.08761 -12.83025 -12.67197 -12.64734 -12.28437 -12.06107 -11.91510 -11.69437 -11.47274 -11.39594 -11.25550 -11.09083 -10.93655 -10.93562 -10.87971 -10.83693 -10.60272 -10.06134 -9.61944 -9.51389 -9.41169 -9.23131 -8.96065 -8.77395 -8.36629 -7.30161 -5.80023 -3.15422 2.54188 2.66000 3.35986 3.44509 3.45906 3.46838 3.60649 4.37958 4.45739 4.58312 4.60013 4.68422 4.68971 4.79328 4.84649 4.90089 5.01144 5.06637 5.18697 5.22891 5.27269 5.28603 5.30989 5.37565 5.48743 5.50654 5.52563 5.54367 5.61585 5.63964 5.79003 5.83235 5.83548 5.94165 5.97263 6.03125 6.07606 6.12064 6.15276 6.30922 6.44495 6.48246 6.75833 7.08003 7.26173 7.94887 8.08555 8.16525 8.19163 8.39302 8.84577 9.17963 9.90618 10.11941 11.37901 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.003588 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.707024 B = 7802.099018 C = 9248.470342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.133 4.133 4 C 0.504 3.496 5 O -0.496 6.496 6 N -0.607 5.607 7 C 0.110 3.890 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.122 4.122 11 C 0.127 3.873 12 H 0.087 0.913 13 C 0.534 3.466 14 O -0.538 6.538 15 N -0.715 5.715 16 C 0.126 3.874 17 C 0.171 3.829 18 H 0.073 0.927 19 C 0.060 3.940 20 O -0.564 6.564 21 N -0.738 5.738 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.008 3.992 25 N -0.933 5.933 26 Si 0.880 3.120 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.273 1.273 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.403 0.597 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.052 0.948 49 H 0.030 0.970 50 H 0.365 0.635 51 H 0.365 0.635 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.587 5.911 -8.716 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.148 4.148 3 C -0.173 4.173 4 C 0.292 3.708 5 O -0.369 6.369 6 N -0.344 5.344 7 C -0.013 4.013 8 C -0.175 4.175 9 C -0.156 4.156 10 C -0.161 4.161 11 C 0.020 3.980 12 H 0.105 0.895 13 C 0.319 3.681 14 O -0.415 6.415 15 N -0.367 5.367 16 C 0.002 3.998 17 C 0.061 3.939 18 H 0.090 0.910 19 C -0.021 4.021 20 O -0.368 6.368 21 N -0.381 5.381 22 C -0.376 4.376 23 H 0.108 0.892 24 C -0.188 4.188 25 N -0.580 5.580 26 Si 0.710 3.290 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.199 1.199 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.086 0.914 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.238 0.762 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.071 0.929 49 H 0.048 0.952 50 H 0.210 0.790 51 H 0.199 0.801 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.655 5.492 -9.138 24.138 hybrid contribution 0.950 0.558 -0.436 1.185 sum -20.705 6.050 -9.574 23.600 Atomic orbital electron populations 1.21785 0.95586 1.01934 1.01550 1.21291 0.95057 0.94691 1.03807 1.21695 0.91657 1.00167 1.03788 1.20835 0.90438 0.83268 0.76224 1.90796 1.68385 1.30611 1.47083 1.48005 1.05501 1.06524 1.74420 1.21771 0.96963 0.83691 0.98877 1.21942 0.96778 0.99702 0.99051 1.21515 0.94904 0.96591 1.02601 1.21821 1.01581 0.94556 0.98152 1.21177 0.81357 0.95397 1.00068 0.89521 1.19599 0.78280 0.86329 0.83877 1.90638 1.57235 1.65150 1.28458 1.45802 1.47975 1.17501 1.25411 1.21443 0.96525 0.82625 0.99243 1.20576 0.89018 0.88393 0.95908 0.90956 1.22984 0.95354 0.98698 0.85072 1.86532 1.75580 1.38025 1.36622 1.42735 1.40794 1.42501 1.12108 1.19071 1.12865 1.17035 0.88605 0.89223 1.24633 0.98349 0.99448 0.96362 1.69703 1.27053 1.38419 1.22871 0.86597 0.77901 0.81096 0.83368 1.21105 1.21835 1.19920 0.92782 0.92818 0.92416 0.91093 0.91195 0.89214 0.89172 0.89430 0.90986 0.91296 0.90532 0.91155 0.91369 0.90233 0.90300 0.76220 0.91217 0.91757 0.92924 0.95151 0.79019 0.80140 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.11 -1.10 5.22 -26.73 -0.14 -1.24 16 3 C -0.13 -1.22 4.06 -27.88 -0.11 -1.33 16 4 C 0.50 6.86 7.39 -10.99 -0.08 6.78 16 5 O -0.50 -8.99 11.75 -19.10 -0.22 -9.22 16 6 N -0.61 -7.18 2.97 -166.53 -0.49 -7.67 16 7 C 0.11 0.82 6.35 -3.71 -0.02 0.80 16 8 C -0.14 -0.94 6.08 -26.61 -0.16 -1.10 16 9 C -0.12 -1.00 5.88 -26.69 -0.16 -1.16 16 10 C -0.12 -1.45 5.32 -26.61 -0.14 -1.59 16 11 C 0.13 1.74 3.31 -68.75 -0.23 1.51 16 12 H 0.09 1.11 7.92 -51.93 -0.41 0.70 16 13 C 0.53 9.60 4.37 -10.99 -0.05 9.55 16 14 O -0.54 -11.43 14.61 -19.11 -0.28 -11.70 16 15 N -0.71 -13.08 5.39 -60.30 -0.32 -13.41 16 16 C 0.13 2.41 5.12 -4.04 -0.02 2.39 16 17 C 0.17 3.39 2.84 -67.93 -0.19 3.20 16 18 H 0.07 1.42 8.08 -51.93 -0.42 1.00 16 19 C 0.06 1.08 6.86 37.16 0.25 1.34 16 20 O -0.56 -10.19 12.64 -35.23 -0.45 -10.63 16 21 N -0.74 -17.28 4.31 -53.43 -0.23 -17.51 16 22 C -0.25 -6.72 10.41 -15.06 -0.16 -6.88 16 23 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 24 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 25 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 26 Si 0.88 22.10 27.74 -169.99 -4.71 17.39 16 27 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 H -0.27 -6.77 6.52 56.52 0.37 -6.40 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 34 H 0.07 0.79 8.10 -51.93 -0.42 0.37 16 35 H 0.09 0.62 7.69 -51.93 -0.40 0.22 16 36 H 0.09 0.68 7.94 -51.93 -0.41 0.27 16 37 H 0.09 0.47 5.93 -51.93 -0.31 0.16 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 1.06 7.93 -51.93 -0.41 0.64 16 45 H 0.40 7.24 7.98 -40.82 -0.33 6.91 16 46 H 0.07 1.46 7.39 -51.93 -0.38 1.08 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 50 H 0.36 4.76 9.12 45.56 0.42 5.18 16 51 H 0.37 8.83 5.66 -40.82 -0.23 8.60 16 52 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 408.65 15.07 6.16 6.16 Total: -1.00 -36.65 408.65 -9.11 -45.76 By element: Atomic # 1 Polarization: 25.58 SS G_CDS: -8.39 Total: 17.19 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -0.94 Total: 11.67 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.28 Total: -66.60 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.95 Total: -31.56 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.71 Total: 17.39 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -36.65 -9.11 -45.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717784921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.349 kcal (2) G-P(sol) polarization free energy of solvation -36.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds