Wall clock time and date at job start Wed Apr 1 2020 00:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47100 * 2 1 4 4 C 1.50704 * 109.47316 * 179.97438 * 3 2 1 5 5 O 1.21278 * 119.99725 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00035 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.63369 * 6.10612 * 6 4 3 8 8 C 1.53193 * 108.77938 * 233.58788 * 7 6 4 9 9 C 1.53036 * 109.31410 * 305.36793 * 8 7 6 10 10 C 1.53049 * 109.53817 * 61.36145 * 9 8 7 11 11 C 1.46929 * 120.62544 * 186.09175 * 6 4 3 12 12 H 1.09001 * 109.58501 * 246.33743 * 11 6 4 13 13 C 1.50696 * 109.59019 * 6.62125 * 11 6 4 14 14 O 1.21283 * 119.99831 * 61.43466 * 13 11 6 15 15 N 1.34772 * 120.00032 * 241.43230 * 13 11 6 16 16 C 1.46502 * 119.99859 * 179.97438 * 15 13 11 17 17 C 1.53000 * 109.46949 * 180.02562 * 16 15 13 18 18 H 1.09005 * 109.47383 * 65.00514 * 17 16 15 19 19 C 1.53005 * 109.47134 * 184.99855 * 17 16 15 20 20 O 1.42898 * 109.46810 * 55.00240 * 19 17 16 21 21 N 1.46492 * 109.47527 * 305.00243 * 17 16 15 22 22 C 1.36933 * 120.00514 * 155.00088 * 21 17 16 23 23 H 1.07998 * 119.99635 * 359.97438 * 22 21 17 24 24 C 1.38808 * 120.00529 * 179.97438 * 22 21 17 25 25 N 1.31618 * 120.00418 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99939 * 0.02562 * 24 22 21 27 27 H 1.48499 * 109.47025 * 89.99807 * 26 24 22 28 28 H 1.48500 * 109.47260 * 209.99908 * 26 24 22 29 29 H 1.48504 * 109.46963 * 329.99646 * 26 24 22 30 30 H 1.09002 * 109.46712 * 300.00155 * 1 2 3 31 31 H 1.09004 * 109.46978 * 59.99549 * 1 2 3 32 32 H 1.08997 * 109.47099 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47266 * 240.00303 * 2 1 3 34 34 H 1.08994 * 109.46936 * 119.99914 * 2 1 3 35 35 H 1.09002 * 109.47465 * 60.00306 * 3 2 1 36 36 H 1.09004 * 109.47573 * 300.00086 * 3 2 1 37 37 H 1.09004 * 109.58627 * 353.38139 * 7 6 4 38 38 H 1.09001 * 109.58496 * 113.79998 * 7 6 4 39 39 H 1.09007 * 109.49375 * 65.31612 * 8 7 6 40 40 H 1.08998 * 109.49576 * 185.37832 * 8 7 6 41 41 H 1.08996 * 109.46408 * 181.38421 * 9 8 7 42 42 H 1.09005 * 109.46024 * 301.34672 * 9 8 7 43 43 H 1.08998 * 109.49671 * 178.68222 * 10 9 8 44 44 H 1.08999 * 109.49466 * 58.59142 * 10 9 8 45 45 H 0.96995 * 120.00214 * 0.02562 * 15 13 11 46 46 H 1.08993 * 109.47054 * 60.00401 * 16 15 13 47 47 H 1.08998 * 109.47051 * 300.00106 * 16 15 13 48 48 H 1.08996 * 109.47314 * 174.99915 * 19 17 16 49 49 H 1.09000 * 109.47125 * 295.00553 * 19 17 16 50 50 H 0.96702 * 114.00412 * 179.97438 * 20 19 17 51 51 H 0.97003 * 119.99831 * 334.99971 * 21 17 16 52 52 H 0.97005 * 120.00361 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2209 2.6097 0.0013 7 6 3.5065 3.8865 0.1358 8 6 3.9078 4.8010 -1.0259 9 6 5.4319 4.9343 -1.0619 10 6 6.0609 3.5580 -1.2910 11 6 5.6839 2.6294 -0.1323 12 1 6.1303 2.9957 0.7922 13 6 6.1841 1.2368 -0.4176 14 8 5.8290 0.6592 -1.4233 15 7 7.0258 0.6332 0.4446 16 6 7.5116 -0.7208 0.1674 17 6 8.4444 -1.1687 1.2944 18 1 7.8795 -1.2495 2.2232 19 6 9.0491 -2.5301 0.9453 20 8 9.6911 -2.4534 -0.3290 21 7 9.5177 -0.1855 1.4597 22 6 10.1557 -0.0643 2.6653 23 1 9.8672 -0.6934 3.4945 24 6 11.1731 0.8669 2.8218 25 7 11.7859 0.9837 3.9808 26 14 11.6716 1.9554 1.3879 27 1 10.8649 3.2020 1.4090 28 1 13.1124 2.2962 1.5026 29 1 11.4337 1.2334 0.1122 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8900 36 1 1.6767 1.9564 -0.8900 37 1 2.4315 3.7086 0.1064 38 1 3.7751 4.3576 1.0813 39 1 3.5579 4.3714 -1.9646 40 1 3.4592 5.7845 -0.8863 41 1 5.7189 5.6041 -1.8724 42 1 5.7834 5.3408 -0.1135 43 1 7.1452 3.6571 -1.3399 44 1 5.6907 3.1402 -2.2272 45 1 7.3095 1.0950 1.2490 46 1 8.0546 -0.7257 -0.7776 47 1 6.6651 -1.4045 0.1036 48 1 9.7803 -2.8083 1.7043 49 1 8.2591 -3.2802 0.9096 50 1 10.0981 -3.2827 -0.6150 51 1 9.7766 0.3797 0.7151 52 1 12.4966 1.6347 4.0902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717784921.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:35 Heat of formation + Delta-G solvation = -140.246687 kcal Electronic energy + Delta-G solvation = -31985.237099 eV Core-core repulsion = 27790.767377 eV Total energy + Delta-G solvation = -4194.469722 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.99568 -39.90710 -38.73137 -38.31063 -36.46723 -35.35399 -35.14889 -33.91158 -33.45272 -32.46662 -30.57355 -29.02495 -27.26651 -26.00149 -25.31622 -24.50391 -23.13178 -21.74843 -21.57341 -21.42738 -20.10276 -19.65954 -18.53262 -18.34141 -17.56460 -17.37882 -16.97829 -16.72766 -16.42361 -15.91972 -15.73868 -15.52851 -15.14103 -15.04026 -14.98449 -14.92885 -14.76499 -14.57714 -14.36643 -14.17392 -13.95392 -13.80140 -13.55543 -13.14960 -12.88576 -12.74732 -12.67928 -12.62932 -12.51416 -12.39503 -12.16471 -11.99611 -11.89640 -11.80841 -11.75648 -11.66085 -11.59472 -11.08158 -10.82185 -10.66981 -10.53325 -9.95792 -9.65248 -9.35677 -8.02258 -5.35266 1.36342 1.40636 1.47873 1.50720 1.67143 2.21164 2.31627 2.47813 3.27982 3.40567 3.51385 3.65143 3.75988 3.81492 3.83707 3.94060 3.97062 4.05237 4.08654 4.10825 4.20330 4.33370 4.44813 4.47466 4.56552 4.57647 4.63224 4.68679 4.71595 4.79563 4.80687 4.85691 4.87819 4.92192 5.03231 5.10149 5.12275 5.16808 5.22684 5.25691 5.41241 5.42628 5.48961 5.58174 5.75685 6.20875 6.37463 6.64936 6.98250 7.06024 7.17363 7.45538 7.80172 8.01400 9.18709 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011092 B = 0.003588 C = 0.003027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2523.707024 B = 7802.099018 C = 9248.470342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.123 4.123 4 C 0.489 3.511 5 O -0.552 6.552 6 N -0.605 5.605 7 C 0.101 3.899 8 C -0.132 4.132 9 C -0.115 4.115 10 C -0.119 4.119 11 C 0.126 3.874 12 H 0.097 0.903 13 C 0.529 3.471 14 O -0.575 6.575 15 N -0.718 5.718 16 C 0.143 3.857 17 C 0.169 3.831 18 H 0.074 0.926 19 C 0.067 3.933 20 O -0.582 6.582 21 N -0.738 5.738 22 C -0.225 4.225 23 H 0.065 0.935 24 C -0.053 4.053 25 N -0.979 5.979 26 Si 0.944 3.056 27 H -0.269 1.269 28 H -0.299 1.299 29 H -0.269 1.269 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.040 0.960 34 H 0.048 0.952 35 H 0.122 0.878 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.061 0.939 40 H 0.108 0.892 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.404 0.596 46 H 0.052 0.948 47 H 0.060 0.940 48 H 0.038 0.962 49 H 0.063 0.937 50 H 0.388 0.612 51 H 0.363 0.637 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.986 8.177 -9.511 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.148 4.148 3 C -0.162 4.162 4 C 0.279 3.721 5 O -0.430 6.430 6 N -0.341 5.341 7 C -0.019 4.019 8 C -0.170 4.170 9 C -0.152 4.152 10 C -0.158 4.158 11 C 0.019 3.981 12 H 0.115 0.885 13 C 0.317 3.683 14 O -0.455 6.455 15 N -0.370 5.370 16 C 0.018 3.982 17 C 0.060 3.940 18 H 0.091 0.909 19 C -0.014 4.014 20 O -0.389 6.389 21 N -0.381 5.381 22 C -0.355 4.355 23 H 0.083 0.917 24 C -0.245 4.245 25 N -0.630 5.630 26 Si 0.773 3.227 27 H -0.195 1.195 28 H -0.226 1.226 29 H -0.195 1.195 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.140 0.860 36 H 0.132 0.868 37 H 0.134 0.866 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.126 0.874 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.239 0.761 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.057 0.943 49 H 0.081 0.919 50 H 0.236 0.764 51 H 0.196 0.804 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -24.106 7.775 -9.957 27.216 hybrid contribution 1.639 -0.254 -0.195 1.670 sum -22.467 7.521 -10.151 25.776 Atomic orbital electron populations 1.21732 0.93052 1.02345 1.02960 1.21243 0.97124 0.95061 1.01354 1.21741 0.88178 0.99963 1.06346 1.21745 0.92331 0.82875 0.75133 1.90762 1.69641 1.32687 1.49882 1.48211 1.04619 1.07911 1.73353 1.22182 0.98164 0.81670 0.99924 1.21944 0.95502 1.01109 0.98404 1.21535 0.96001 0.94142 1.03545 1.21813 1.01429 0.96249 0.96295 1.21155 0.83060 0.92659 1.01223 0.88494 1.20348 0.77246 0.87741 0.82926 1.90603 1.58297 1.66574 1.30044 1.45852 1.48282 1.17226 1.25650 1.21146 0.95753 0.83362 0.97914 1.20737 0.88217 0.88708 0.96304 0.90857 1.22772 0.95832 0.97898 0.84876 1.86472 1.75942 1.40200 1.36299 1.42656 1.41257 1.43498 1.10651 1.19010 1.12045 1.15403 0.89091 0.91727 1.25297 0.99009 1.01437 0.98745 1.69854 1.28206 1.39802 1.25101 0.85569 0.77081 0.79822 0.80241 1.19470 1.22557 1.19490 0.91124 0.91522 0.92641 0.94066 0.93324 0.85956 0.86780 0.86595 0.89395 0.92068 0.87351 0.89980 0.90411 0.90977 0.92412 0.76094 0.92993 0.92168 0.94322 0.91879 0.76376 0.80367 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.91 71.98 0.71 -1.07 16 2 C -0.11 -2.14 5.22 30.59 0.16 -1.98 16 3 C -0.12 -1.97 4.06 29.85 0.12 -1.85 16 4 C 0.49 12.98 7.39 87.66 0.65 13.62 16 5 O -0.55 -20.69 11.75 20.56 0.24 -20.45 16 6 N -0.60 -13.30 2.97 -799.18 -2.38 -15.67 16 7 C 0.10 1.12 6.35 86.36 0.55 1.67 16 8 C -0.13 -1.31 6.08 30.67 0.19 -1.12 16 9 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 10 C -0.12 -2.73 5.32 30.68 0.16 -2.56 16 11 C 0.13 3.39 3.31 44.23 0.15 3.53 16 12 H 0.10 2.37 7.92 -2.39 -0.02 2.35 16 13 C 0.53 19.46 4.37 87.66 0.38 19.84 16 14 O -0.58 -25.38 14.61 20.54 0.30 -25.08 16 15 N -0.72 -26.80 5.39 -463.07 -2.49 -29.29 16 16 C 0.14 5.58 5.12 86.38 0.44 6.02 16 17 C 0.17 6.71 2.84 44.99 0.13 6.84 16 18 H 0.07 2.90 8.08 -2.38 -0.02 2.88 16 19 C 0.07 2.37 6.86 71.98 0.49 2.86 16 20 O -0.58 -20.52 12.64 -148.98 -1.88 -22.40 16 21 N -0.74 -34.57 4.31 -322.95 -1.39 -35.96 16 22 C -0.22 -12.44 10.41 84.03 0.87 -11.56 16 23 H 0.06 3.86 8.06 -2.91 -0.02 3.84 16 24 C -0.05 -3.07 5.50 84.86 0.47 -2.60 16 25 N -0.98 -61.53 13.97 21.65 0.30 -61.23 16 26 Si 0.94 45.94 27.74 68.60 1.90 47.85 16 27 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 28 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 29 H -0.27 -12.77 6.52 99.48 0.65 -12.12 16 30 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 32 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 34 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.12 1.18 7.69 -2.39 -0.02 1.16 16 36 H 0.11 1.31 7.94 -2.38 -0.02 1.29 16 37 H 0.12 0.65 5.93 -2.38 -0.01 0.64 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 40 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.08 0.97 8.14 -2.38 -0.02 0.96 16 43 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.06 1.55 7.93 -2.39 -0.02 1.54 16 45 H 0.40 14.68 7.98 -92.71 -0.74 13.94 16 46 H 0.05 2.22 7.39 -2.39 -0.02 2.20 16 47 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.39 9.58 9.12 -74.06 -0.68 8.90 16 51 H 0.36 17.40 5.66 -92.71 -0.52 16.88 16 52 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16 Total: -1.00 -83.38 408.65 -0.81 -84.20 By element: Atomic # 1 Polarization: 48.88 SS G_CDS: -1.07 Total: 47.81 kcal Atomic # 6 Polarization: 24.58 SS G_CDS: 5.66 Total: 30.23 kcal Atomic # 7 Polarization: -136.20 SS G_CDS: -5.96 Total: -142.16 kcal Atomic # 8 Polarization: -66.59 SS G_CDS: -1.34 Total: -67.93 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.85 kcal Total: -83.38 -0.81 -84.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717784921.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.049 kcal (2) G-P(sol) polarization free energy of solvation -83.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds