Wall clock time and date at job start Wed Apr 1 2020 00:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47238 * 2 1 4 4 C 1.50700 * 109.46818 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00307 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99545 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.63210 * 3.80802 * 6 4 3 8 8 C 1.53193 * 108.77907 * 126.36579 * 7 6 4 9 9 C 1.53041 * 109.30758 * 54.63444 * 8 7 6 10 10 C 1.53078 * 109.66016 * 298.69755 * 9 8 7 11 11 C 1.46928 * 120.62789 * 183.78247 * 6 4 3 12 12 H 1.08998 * 109.58358 * 113.70677 * 11 6 4 13 13 C 1.50699 * 109.58725 * 353.41821 * 11 6 4 14 14 O 1.21276 * 120.00242 * 294.23480 * 13 11 6 15 15 N 1.34774 * 119.99737 * 114.23994 * 13 11 6 16 16 C 1.46498 * 119.99894 * 180.27548 * 15 13 11 17 17 C 1.53001 * 109.47260 * 179.72232 * 16 15 13 18 18 H 1.08996 * 109.47151 * 64.99580 * 17 16 15 19 19 C 1.53002 * 109.47375 * 185.00016 * 17 16 15 20 20 O 1.42900 * 109.47043 * 54.99558 * 19 17 16 21 21 N 1.46509 * 109.47023 * 304.99903 * 17 16 15 22 22 C 1.36931 * 119.99747 * 154.99949 * 21 17 16 23 23 H 1.07993 * 120.00217 * 0.02562 * 22 21 17 24 24 C 1.38816 * 119.99606 * 180.02562 * 22 21 17 25 25 N 1.31621 * 119.99836 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00189 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46727 * 90.00299 * 26 24 22 28 28 H 1.48497 * 109.47457 * 210.00278 * 26 24 22 29 29 H 1.48499 * 109.47363 * 330.00612 * 26 24 22 30 30 H 1.08998 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47403 * 300.00540 * 1 2 3 32 32 H 1.09004 * 109.47097 * 60.00682 * 1 2 3 33 33 H 1.08997 * 109.47403 * 239.99460 * 2 1 3 34 34 H 1.09007 * 109.46690 * 119.99635 * 2 1 3 35 35 H 1.08997 * 109.47364 * 59.99437 * 3 2 1 36 36 H 1.08999 * 109.46413 * 299.99206 * 3 2 1 37 37 H 1.08997 * 109.58835 * 246.15732 * 7 6 4 38 38 H 1.09003 * 109.58778 * 6.57701 * 7 6 4 39 39 H 1.08998 * 109.49577 * 174.58553 * 8 7 6 40 40 H 1.09002 * 109.49546 * 294.65051 * 8 7 6 41 41 H 1.09002 * 109.46370 * 58.65863 * 9 8 7 42 42 H 1.09004 * 109.45759 * 178.63124 * 9 8 7 43 43 H 1.08994 * 109.38939 * 301.28156 * 10 9 8 44 44 H 1.08997 * 109.62008 * 181.17013 * 10 9 8 45 45 H 0.97005 * 120.00319 * 359.97438 * 15 13 11 46 46 H 1.09000 * 109.47284 * 299.72180 * 16 15 13 47 47 H 1.09006 * 109.47319 * 59.72240 * 16 15 13 48 48 H 1.08997 * 109.47529 * 174.99568 * 19 17 16 49 49 H 1.08998 * 109.46867 * 295.00553 * 19 17 16 50 50 H 0.96701 * 114.00164 * 179.97438 * 20 19 17 51 51 H 0.96997 * 119.99402 * 334.99977 * 21 17 16 52 52 H 0.97003 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2209 2.6097 0.0002 7 6 3.5028 3.8887 0.0831 8 6 4.0770 4.7022 1.2473 9 6 5.5906 4.8416 1.0691 10 6 6.2404 3.4556 1.0815 11 6 5.6878 2.6271 -0.0826 12 1 5.9950 3.0745 -1.0278 13 6 6.2155 1.2183 0.0048 14 8 6.0776 0.5814 1.0276 15 7 6.8408 0.6661 -1.0537 16 6 7.3485 -0.7056 -0.9709 17 6 8.0033 -1.0882 -2.2997 18 1 8.8821 -0.4649 -2.4645 19 6 8.4220 -2.5592 -2.2571 20 8 7.2908 -3.3671 -1.9259 21 7 7.0480 -0.8838 -3.3916 22 6 7.5008 -0.6558 -4.6636 23 1 8.5619 -0.6271 -4.8621 24 6 6.5956 -0.4617 -5.6980 25 7 7.0308 -0.2430 -6.9208 26 14 4.7601 -0.5121 -5.3549 27 1 4.2828 0.8520 -5.0133 28 1 4.0442 -0.9995 -6.5611 29 1 4.4942 -1.4288 -4.2173 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.6319 4.4413 -0.8475 38 1 2.4428 3.7021 0.2556 39 1 3.6196 5.6915 1.2604 40 1 3.8663 4.1914 2.1869 41 1 5.8009 5.3305 0.1179 42 1 5.9984 5.4406 1.8834 43 1 6.0120 2.9572 2.0235 44 1 7.3205 3.5568 0.9754 45 1 6.9508 1.1754 -1.8720 46 1 8.0851 -0.7727 -0.1703 47 1 6.5231 -1.3867 -0.7632 48 1 8.8071 -2.8558 -3.2327 49 1 9.1980 -2.6944 -1.5037 50 1 7.4830 -4.3137 -1.8814 51 1 6.0949 -0.9101 -3.2133 52 1 6.3983 -0.1077 -7.6438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717784923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:39 Heat of formation + Delta-G solvation = -110.421786 kcal Electronic energy + Delta-G solvation = -32426.473724 eV Core-core repulsion = 28233.297306 eV Total energy + Delta-G solvation = -4193.176418 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.87187 -38.51969 -37.54096 -36.97480 -34.85959 -34.41183 -33.34677 -33.03182 -31.80220 -31.20804 -28.80095 -28.20149 -26.05980 -24.92550 -23.70917 -23.12494 -22.21172 -20.78201 -20.19210 -20.01456 -18.86823 -17.89246 -17.27053 -16.79444 -16.33178 -16.28482 -15.78149 -15.39850 -14.90540 -14.73566 -14.46742 -14.30708 -14.09607 -13.95976 -13.88963 -13.45818 -13.33465 -13.14617 -13.05504 -12.84902 -12.72839 -12.50198 -12.24366 -12.04941 -11.81600 -11.66883 -11.42330 -11.36685 -11.22033 -11.07682 -10.92344 -10.89217 -10.82056 -10.79135 -10.58370 -10.02655 -9.60642 -9.41478 -9.37026 -9.18861 -8.94370 -8.72406 -8.34827 -7.28052 -5.79284 -3.13955 2.58433 2.72134 3.38068 3.46214 3.51283 3.52326 3.62893 4.41756 4.48116 4.60340 4.62416 4.70688 4.79110 4.83951 4.91620 4.91997 5.02479 5.10102 5.21864 5.28958 5.31105 5.33335 5.37253 5.47859 5.50174 5.52417 5.55296 5.58648 5.61028 5.67906 5.77094 5.82084 5.93946 5.95326 6.04353 6.06982 6.09594 6.11862 6.27289 6.36161 6.41982 6.48218 6.82189 7.09514 7.31383 7.95914 8.10218 8.21169 8.25158 8.40483 8.88131 9.19765 9.92822 10.14455 11.38599 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.004228 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.577965 B = 6621.677820 C = 7255.655524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.134 4.134 4 C 0.500 3.500 5 O -0.488 6.488 6 N -0.608 5.608 7 C 0.109 3.891 8 C -0.136 4.136 9 C -0.118 4.118 10 C -0.120 4.120 11 C 0.126 3.874 12 H 0.086 0.914 13 C 0.532 3.468 14 O -0.533 6.533 15 N -0.717 5.717 16 C 0.125 3.875 17 C 0.171 3.829 18 H 0.072 0.928 19 C 0.060 3.940 20 O -0.562 6.562 21 N -0.738 5.738 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.009 3.991 25 N -0.933 5.933 26 Si 0.879 3.121 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.272 1.272 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.402 0.598 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.029 0.971 50 H 0.364 0.636 51 H 0.367 0.633 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 10.032 17.093 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C -0.174 4.174 4 C 0.288 3.712 5 O -0.361 6.361 6 N -0.345 5.345 7 C -0.014 4.014 8 C -0.174 4.174 9 C -0.156 4.156 10 C -0.158 4.158 11 C 0.019 3.981 12 H 0.104 0.896 13 C 0.318 3.682 14 O -0.410 6.410 15 N -0.369 5.369 16 C 0.000 4.000 17 C 0.061 3.939 18 H 0.090 0.910 19 C -0.021 4.021 20 O -0.366 6.366 21 N -0.381 5.381 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.187 4.187 25 N -0.581 5.581 26 Si 0.710 3.290 27 H -0.213 1.213 28 H -0.219 1.219 29 H -0.198 1.198 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.237 0.763 46 H 0.076 0.924 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.047 0.953 50 H 0.209 0.791 51 H 0.201 0.799 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.248 9.596 17.621 21.333 hybrid contribution -0.952 -0.241 -0.529 1.116 sum -8.200 9.355 17.091 21.139 Atomic orbital electron populations 1.21776 0.95556 1.01962 1.01487 1.21307 0.95121 0.94650 1.03936 1.21707 0.91624 1.00260 1.03768 1.20923 0.90546 0.83399 0.76334 1.90868 1.68078 1.30439 1.46718 1.48002 1.04937 1.06447 1.75127 1.21765 0.96540 0.84060 0.98996 1.21932 0.96378 1.00245 0.98857 1.21517 0.95025 0.96539 1.02491 1.21804 1.00281 0.95218 0.98541 1.21192 0.81149 0.95588 1.00125 0.89644 1.19604 0.77449 0.86969 0.84205 1.90635 1.56735 1.62382 1.31221 1.45833 1.59384 1.15919 1.15804 1.21452 0.98974 0.82541 0.96992 1.20575 0.93798 0.92210 0.87347 0.91043 1.22986 0.87250 0.93877 0.98028 1.86567 1.36262 1.20423 1.93309 1.42748 1.03876 1.86645 1.04814 1.19073 0.94259 1.41043 0.83162 0.89203 1.24611 0.97217 1.01648 0.95192 1.69704 1.33380 1.55541 0.99430 0.86601 0.87244 0.77932 0.77247 1.21330 1.21872 1.19814 0.92387 0.92880 0.92743 0.91030 0.91122 0.89253 0.89073 0.91031 0.89428 0.90535 0.91312 0.91452 0.91240 0.90292 0.90425 0.76300 0.92373 0.90573 0.92964 0.95250 0.79089 0.79924 0.93103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.16 0.37 -1.04 16 2 C -0.11 -1.39 5.22 -26.73 -0.14 -1.53 16 3 C -0.13 -1.49 4.08 -27.88 -0.11 -1.61 16 4 C 0.50 7.70 7.56 -10.98 -0.08 7.61 16 5 O -0.49 -9.87 11.52 -19.26 -0.22 -10.09 16 6 N -0.61 -7.81 2.97 -166.53 -0.50 -8.30 16 7 C 0.11 0.91 6.33 -3.71 -0.02 0.89 16 8 C -0.14 -0.97 6.09 -26.61 -0.16 -1.13 16 9 C -0.12 -0.93 5.88 -26.67 -0.16 -1.08 16 10 C -0.12 -1.32 5.30 -26.59 -0.14 -1.46 16 11 C 0.13 1.73 3.31 -68.75 -0.23 1.50 16 12 H 0.09 1.07 7.93 -51.93 -0.41 0.66 16 13 C 0.53 9.55 4.38 -10.99 -0.05 9.50 16 14 O -0.53 -11.36 14.52 -19.26 -0.28 -11.64 16 15 N -0.72 -13.06 5.39 -60.29 -0.32 -13.39 16 16 C 0.12 2.38 5.12 -4.04 -0.02 2.36 16 17 C 0.17 3.37 2.84 -67.92 -0.19 3.18 16 18 H 0.07 1.35 8.08 -51.93 -0.42 0.93 16 19 C 0.06 1.08 6.86 37.16 0.25 1.33 16 20 O -0.56 -10.43 12.64 -35.23 -0.45 -10.88 16 21 N -0.74 -17.61 4.31 -53.42 -0.23 -17.85 16 22 C -0.25 -6.77 10.41 -15.06 -0.16 -6.93 16 23 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 24 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 25 N -0.93 -28.97 13.97 55.49 0.78 -28.19 16 26 Si 0.88 22.81 27.74 -169.99 -4.71 18.09 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.67 7.11 56.52 0.40 -7.26 16 29 H -0.27 -7.12 6.52 56.52 0.37 -6.75 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.09 0.77 7.53 -51.93 -0.39 0.38 16 36 H 0.09 0.87 8.08 -51.93 -0.42 0.45 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.57 5.95 -51.93 -0.31 0.26 16 39 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 1.02 7.86 -51.93 -0.41 0.61 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 45 H 0.40 7.20 7.99 -40.82 -0.33 6.87 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.70 7.39 -51.93 -0.38 1.31 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 50 H 0.36 4.90 9.12 45.56 0.42 5.31 16 51 H 0.37 9.32 5.66 -40.82 -0.23 9.09 16 52 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 408.46 15.07 6.16 6.16 Total: -1.00 -37.41 408.46 -9.11 -46.52 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: -8.39 Total: 17.79 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: -0.94 Total: 11.77 kcal Atomic # 7 Polarization: -67.45 SS G_CDS: -0.28 Total: -67.72 kcal Atomic # 8 Polarization: -31.66 SS G_CDS: -0.95 Total: -32.61 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.71 Total: 18.09 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.41 -9.11 -46.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717784923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.902 kcal (2) G-P(sol) polarization free energy of solvation -37.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds