Wall clock time and date at job start Wed Apr 1 2020 00:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47238 * 2 1 4 4 C 1.50700 * 109.46818 * 179.97438 * 3 2 1 5 5 O 1.21280 * 120.00307 * 359.97438 * 4 3 2 6 6 N 1.34783 * 119.99545 * 179.97438 * 4 3 2 7 7 C 1.46921 * 120.63210 * 3.80802 * 6 4 3 8 8 C 1.53193 * 108.77907 * 126.36579 * 7 6 4 9 9 C 1.53041 * 109.30758 * 54.63444 * 8 7 6 10 10 C 1.53078 * 109.66016 * 298.69755 * 9 8 7 11 11 C 1.46928 * 120.62789 * 183.78247 * 6 4 3 12 12 H 1.08998 * 109.58358 * 113.70677 * 11 6 4 13 13 C 1.50699 * 109.58725 * 353.41821 * 11 6 4 14 14 O 1.21276 * 120.00242 * 294.23480 * 13 11 6 15 15 N 1.34774 * 119.99737 * 114.23994 * 13 11 6 16 16 C 1.46498 * 119.99894 * 180.27548 * 15 13 11 17 17 C 1.53001 * 109.47260 * 179.72232 * 16 15 13 18 18 H 1.08996 * 109.47151 * 64.99580 * 17 16 15 19 19 C 1.53002 * 109.47375 * 185.00016 * 17 16 15 20 20 O 1.42900 * 109.47043 * 54.99558 * 19 17 16 21 21 N 1.46509 * 109.47023 * 304.99903 * 17 16 15 22 22 C 1.36931 * 119.99747 * 154.99949 * 21 17 16 23 23 H 1.07993 * 120.00217 * 0.02562 * 22 21 17 24 24 C 1.38816 * 119.99606 * 180.02562 * 22 21 17 25 25 N 1.31621 * 119.99836 * 180.02562 * 24 22 21 26 26 Si 1.86800 * 120.00189 * 359.97438 * 24 22 21 27 27 H 1.48506 * 109.46727 * 90.00299 * 26 24 22 28 28 H 1.48497 * 109.47457 * 210.00278 * 26 24 22 29 29 H 1.48499 * 109.47363 * 330.00612 * 26 24 22 30 30 H 1.08998 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47403 * 300.00540 * 1 2 3 32 32 H 1.09004 * 109.47097 * 60.00682 * 1 2 3 33 33 H 1.08997 * 109.47403 * 239.99460 * 2 1 3 34 34 H 1.09007 * 109.46690 * 119.99635 * 2 1 3 35 35 H 1.08997 * 109.47364 * 59.99437 * 3 2 1 36 36 H 1.08999 * 109.46413 * 299.99206 * 3 2 1 37 37 H 1.08997 * 109.58835 * 246.15732 * 7 6 4 38 38 H 1.09003 * 109.58778 * 6.57701 * 7 6 4 39 39 H 1.08998 * 109.49577 * 174.58553 * 8 7 6 40 40 H 1.09002 * 109.49546 * 294.65051 * 8 7 6 41 41 H 1.09002 * 109.46370 * 58.65863 * 9 8 7 42 42 H 1.09004 * 109.45759 * 178.63124 * 9 8 7 43 43 H 1.08994 * 109.38939 * 301.28156 * 10 9 8 44 44 H 1.08997 * 109.62008 * 181.17013 * 10 9 8 45 45 H 0.97005 * 120.00319 * 359.97438 * 15 13 11 46 46 H 1.09000 * 109.47284 * 299.72180 * 16 15 13 47 47 H 1.09006 * 109.47319 * 59.72240 * 16 15 13 48 48 H 1.08997 * 109.47529 * 174.99568 * 19 17 16 49 49 H 1.08998 * 109.46867 * 295.00553 * 19 17 16 50 50 H 0.96701 * 114.00164 * 179.97438 * 20 19 17 51 51 H 0.96997 * 119.99402 * 334.99977 * 21 17 16 52 52 H 0.97003 * 120.00046 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4424 0.0006 5 8 4.1534 0.3921 0.0015 6 7 4.2209 2.6097 0.0002 7 6 3.5028 3.8887 0.0831 8 6 4.0770 4.7022 1.2473 9 6 5.5906 4.8416 1.0691 10 6 6.2404 3.4556 1.0815 11 6 5.6878 2.6271 -0.0826 12 1 5.9950 3.0745 -1.0278 13 6 6.2155 1.2183 0.0048 14 8 6.0776 0.5814 1.0276 15 7 6.8408 0.6661 -1.0537 16 6 7.3485 -0.7056 -0.9709 17 6 8.0033 -1.0882 -2.2997 18 1 8.8821 -0.4649 -2.4645 19 6 8.4220 -2.5592 -2.2571 20 8 7.2908 -3.3671 -1.9259 21 7 7.0480 -0.8838 -3.3916 22 6 7.5008 -0.6558 -4.6636 23 1 8.5619 -0.6271 -4.8621 24 6 6.5956 -0.4617 -5.6980 25 7 7.0308 -0.2430 -6.9208 26 14 4.7601 -0.5121 -5.3549 27 1 4.2828 0.8520 -5.0133 28 1 4.0442 -0.9995 -6.5611 29 1 4.4942 -1.4288 -4.2173 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 1.6766 1.9564 0.8899 36 1 1.6767 1.9562 -0.8901 37 1 3.6319 4.4413 -0.8475 38 1 2.4428 3.7021 0.2556 39 1 3.6196 5.6915 1.2604 40 1 3.8663 4.1914 2.1869 41 1 5.8009 5.3305 0.1179 42 1 5.9984 5.4406 1.8834 43 1 6.0120 2.9572 2.0235 44 1 7.3205 3.5568 0.9754 45 1 6.9508 1.1754 -1.8720 46 1 8.0851 -0.7727 -0.1703 47 1 6.5231 -1.3867 -0.7632 48 1 8.8071 -2.8558 -3.2327 49 1 9.1980 -2.6944 -1.5037 50 1 7.4830 -4.3137 -1.8814 51 1 6.0949 -0.9101 -3.2133 52 1 6.3983 -0.1077 -7.6438 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717784923.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:39 Heat of formation + Delta-G solvation = -139.432135 kcal Electronic energy + Delta-G solvation = -32427.731707 eV Core-core repulsion = 28233.297306 eV Total energy + Delta-G solvation = -4194.434401 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.99508 -39.89958 -38.73331 -38.29709 -36.46404 -35.40792 -35.13946 -33.91647 -33.44630 -32.45994 -30.56869 -29.06563 -27.25564 -26.00759 -25.31952 -24.48074 -23.16983 -21.71752 -21.60361 -21.41149 -20.08135 -19.68410 -18.53570 -18.34157 -17.50245 -17.46807 -16.86288 -16.81402 -16.49943 -15.92955 -15.69583 -15.53463 -15.18987 -15.13519 -15.02203 -14.78147 -14.73119 -14.51128 -14.42164 -14.17873 -14.04059 -13.83637 -13.45510 -13.19245 -12.94366 -12.82890 -12.68902 -12.66412 -12.49071 -12.42590 -12.17604 -12.01285 -11.88279 -11.83038 -11.73442 -11.72569 -11.59557 -11.10465 -10.81151 -10.65761 -10.49173 -9.92785 -9.66761 -9.35635 -8.04788 -5.35773 1.29780 1.34645 1.43874 1.48796 1.62844 2.27771 2.32218 2.43931 3.26013 3.41047 3.50766 3.66681 3.74825 3.82272 3.85863 3.91587 3.96079 4.02011 4.05790 4.11271 4.22882 4.38791 4.42618 4.48922 4.53160 4.56146 4.60118 4.63091 4.69394 4.79008 4.81327 4.83296 4.87276 4.93441 5.04851 5.11357 5.16601 5.17801 5.18978 5.20027 5.37368 5.43193 5.48564 5.60915 5.74909 6.19561 6.32871 6.67571 6.98577 7.04753 7.14954 7.50070 7.79875 8.00445 9.16279 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009061 B = 0.004228 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3089.577965 B = 6621.677820 C = 7255.655524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.482 3.518 5 O -0.549 6.549 6 N -0.605 5.605 7 C 0.099 3.901 8 C -0.131 4.131 9 C -0.114 4.114 10 C -0.114 4.114 11 C 0.124 3.876 12 H 0.099 0.901 13 C 0.528 3.472 14 O -0.572 6.572 15 N -0.719 5.719 16 C 0.140 3.860 17 C 0.167 3.833 18 H 0.084 0.916 19 C 0.065 3.935 20 O -0.585 6.585 21 N -0.740 5.740 22 C -0.220 4.220 23 H 0.072 0.928 24 C -0.048 4.048 25 N -0.976 5.976 26 Si 0.940 3.060 27 H -0.276 1.276 28 H -0.296 1.296 29 H -0.281 1.281 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.047 0.953 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.403 0.597 46 H 0.072 0.928 47 H 0.041 0.959 48 H 0.038 0.962 49 H 0.068 0.932 50 H 0.387 0.613 51 H 0.360 0.640 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.754 12.554 18.397 23.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C -0.164 4.164 4 C 0.272 3.728 5 O -0.427 6.427 6 N -0.341 5.341 7 C -0.021 4.021 8 C -0.169 4.169 9 C -0.151 4.151 10 C -0.152 4.152 11 C 0.017 3.983 12 H 0.117 0.883 13 C 0.316 3.684 14 O -0.451 6.451 15 N -0.372 5.372 16 C 0.016 3.984 17 C 0.058 3.942 18 H 0.102 0.898 19 C -0.016 4.016 20 O -0.392 6.392 21 N -0.382 5.382 22 C -0.351 4.351 23 H 0.090 0.910 24 C -0.240 4.240 25 N -0.627 5.627 26 Si 0.770 3.230 27 H -0.202 1.202 28 H -0.222 1.222 29 H -0.207 1.207 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.066 0.934 35 H 0.141 0.859 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.129 0.871 39 H 0.126 0.874 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.238 0.762 46 H 0.090 0.910 47 H 0.059 0.941 48 H 0.056 0.944 49 H 0.086 0.914 50 H 0.235 0.765 51 H 0.192 0.808 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.678 12.160 18.967 24.144 hybrid contribution -0.406 -1.069 -0.837 1.417 sum -9.084 11.091 18.130 23.113 Atomic orbital electron populations 1.21725 0.92814 1.02377 1.03063 1.21259 0.97389 0.95241 1.01117 1.21750 0.88544 0.99743 1.06355 1.21786 0.92361 0.83210 0.75426 1.90840 1.69409 1.32675 1.49762 1.48224 1.04580 1.07601 1.73745 1.22185 0.97461 0.82092 1.00400 1.21936 0.95805 1.01482 0.97697 1.21539 0.95468 0.94283 1.03837 1.21790 1.00904 0.96551 0.95984 1.21263 0.82185 0.92889 1.01978 0.88296 1.20347 0.76337 0.88467 0.83208 1.90600 1.57922 1.63917 1.32657 1.45876 1.59685 1.15498 1.16117 1.21180 0.97816 0.82619 0.96826 1.20829 0.93257 0.93911 0.86198 0.89818 1.22828 0.87858 0.92260 0.98618 1.86521 1.36976 1.22417 1.93287 1.42743 1.04129 1.86785 1.04563 1.19067 0.93325 1.38309 0.84402 0.91020 1.25174 1.00731 1.02945 0.95175 1.69829 1.34455 1.58060 1.00310 0.85636 0.83051 0.78047 0.76250 1.20183 1.22238 1.20716 0.92687 0.90769 0.91559 0.94533 0.93448 0.85930 0.86687 0.89480 0.87094 0.87369 0.92284 0.90208 0.89667 0.92716 0.89909 0.76175 0.90998 0.94080 0.94358 0.91360 0.76531 0.80774 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.91 71.98 0.71 -1.70 16 2 C -0.11 -2.78 5.22 30.59 0.16 -2.62 16 3 C -0.12 -2.55 4.08 29.85 0.12 -2.43 16 4 C 0.48 14.69 7.56 87.66 0.66 15.35 16 5 O -0.55 -23.13 11.52 20.70 0.24 -22.89 16 6 N -0.61 -14.61 2.97 -799.18 -2.38 -16.99 16 7 C 0.10 1.29 6.33 86.36 0.55 1.84 16 8 C -0.13 -1.36 6.09 30.67 0.19 -1.17 16 9 C -0.11 -1.41 5.88 30.63 0.18 -1.23 16 10 C -0.11 -2.35 5.30 30.69 0.16 -2.19 16 11 C 0.12 3.29 3.31 44.23 0.15 3.43 16 12 H 0.10 2.34 7.93 -2.39 -0.02 2.32 16 13 C 0.53 19.33 4.38 87.66 0.38 19.72 16 14 O -0.57 -25.31 14.52 20.71 0.30 -25.01 16 15 N -0.72 -26.63 5.39 -463.06 -2.49 -29.12 16 16 C 0.14 5.44 5.12 86.38 0.44 5.88 16 17 C 0.17 6.53 2.84 44.99 0.13 6.66 16 18 H 0.08 3.09 8.08 -2.39 -0.02 3.07 16 19 C 0.06 2.28 6.86 71.98 0.49 2.78 16 20 O -0.59 -21.53 12.64 -148.98 -1.88 -23.42 16 21 N -0.74 -35.52 4.31 -322.93 -1.39 -36.91 16 22 C -0.22 -12.25 10.41 84.04 0.87 -11.37 16 23 H 0.07 4.22 8.06 -2.91 -0.02 4.20 16 24 C -0.05 -2.82 5.50 84.86 0.47 -2.35 16 25 N -0.98 -61.47 13.97 21.65 0.30 -61.17 16 26 Si 0.94 48.04 27.74 68.60 1.90 49.94 16 27 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 28 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 29 H -0.28 -14.58 6.52 99.48 0.65 -13.93 16 30 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.04 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 35 H 0.12 1.68 7.53 -2.39 -0.02 1.67 16 36 H 0.12 1.82 8.08 -2.39 -0.02 1.80 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.11 0.93 5.95 -2.39 -0.01 0.92 16 39 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.05 1.40 7.86 -2.39 -0.02 1.38 16 44 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.40 14.51 7.99 -92.70 -0.74 13.77 16 46 H 0.07 2.56 8.14 -2.39 -0.02 2.55 16 47 H 0.04 1.90 7.39 -2.38 -0.02 1.88 16 48 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 50 H 0.39 10.08 9.12 -74.06 -0.68 9.40 16 51 H 0.36 18.44 5.66 -92.71 -0.52 17.92 16 52 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -85.69 408.46 -0.80 -86.49 By element: Atomic # 1 Polarization: 49.56 SS G_CDS: -1.07 Total: 48.49 kcal Atomic # 6 Polarization: 24.92 SS G_CDS: 5.67 Total: 30.59 kcal Atomic # 7 Polarization: -138.23 SS G_CDS: -5.96 Total: -144.19 kcal Atomic # 8 Polarization: -69.98 SS G_CDS: -1.34 Total: -71.32 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 1.90 Total: 49.94 kcal Total: -85.69 -0.80 -86.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717784923.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.943 kcal (2) G-P(sol) polarization free energy of solvation -85.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds