Wall clock time and date at job start Wed Apr 1 2020 01:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47262 * 2 1 4 4 N 1.46897 * 109.46883 * 174.89005 * 3 2 1 5 5 C 1.46904 * 111.00182 * 76.02803 * 4 3 2 6 6 C 1.52998 * 109.47051 * 199.54191 * 5 4 3 7 7 N 1.46499 * 109.46734 * 174.88816 * 6 5 4 8 8 C 1.34784 * 119.99686 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00067 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99750 * 179.97438 * 8 7 6 11 11 H 1.08997 * 110.56745 * 61.22607 * 10 8 7 12 12 C 1.54505 * 110.51052 * 298.54459 * 10 8 7 13 13 C 1.54489 * 104.06160 * 241.35669 * 12 10 8 14 14 O 1.44421 * 104.89918 * 335.96449 * 13 12 10 15 15 C 1.44697 * 105.13816 * 40.49964 * 14 13 12 16 16 H 1.08991 * 110.45111 * 78.40553 * 15 14 13 17 17 C 1.53001 * 110.35105 * 200.67283 * 15 14 13 18 18 C 1.46902 * 110.99531 * 199.97602 * 4 3 2 19 19 C 1.50696 * 109.46887 * 66.05178 * 18 4 3 20 20 O 1.21295 * 120.00624 * 359.97438 * 19 18 4 21 21 N 1.34778 * 120.00150 * 179.97438 * 19 18 4 22 22 C 1.37095 * 120.00305 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00217 * 359.97438 * 22 21 19 24 24 C 1.38958 * 120.00195 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99895 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00018 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46909 * 60.00247 * 26 24 22 28 28 H 1.48500 * 109.47130 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47672 * 300.00348 * 26 24 22 30 30 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47170 * 299.99880 * 1 2 3 32 32 H 1.09008 * 109.47058 * 59.99598 * 1 2 3 33 33 H 1.09002 * 109.47170 * 240.00120 * 2 1 3 34 34 H 1.08996 * 109.47215 * 120.00034 * 2 1 3 35 35 H 1.08999 * 109.46774 * 54.88724 * 3 2 1 36 36 H 1.09003 * 109.46998 * 294.89119 * 3 2 1 37 37 H 1.09003 * 109.46993 * 79.54101 * 5 4 3 38 38 H 1.08998 * 109.46938 * 319.54064 * 5 4 3 39 39 H 1.08997 * 109.47212 * 54.88398 * 6 5 4 40 40 H 1.08996 * 109.46855 * 294.88075 * 6 5 4 41 41 H 0.97003 * 120.00459 * 359.97438 * 7 6 5 42 42 H 1.09004 * 110.51469 * 122.71434 * 12 10 8 43 43 H 1.09001 * 110.51485 * 359.97438 * 12 10 8 44 44 H 1.08997 * 110.37150 * 94.85414 * 13 12 10 45 45 H 1.08999 * 110.36940 * 217.08043 * 13 12 10 46 46 H 1.09001 * 109.46447 * 175.40931 * 17 15 14 47 47 H 1.08995 * 109.47351 * 295.40850 * 17 15 14 48 48 H 1.09004 * 109.47039 * 55.41385 * 17 15 14 49 49 H 1.09003 * 109.47145 * 186.04488 * 18 4 3 50 50 H 1.09000 * 109.47707 * 306.04661 * 18 4 3 51 51 H 0.96998 * 120.00126 * 0.02562 * 21 19 18 52 52 H 0.96993 * 119.99947 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1234 5 6 4.1398 1.0744 -1.1482 6 6 5.5752 0.6146 -0.8857 7 7 6.1691 0.1309 -2.1345 8 6 7.4364 -0.3279 -2.1447 9 8 8.0851 -0.3400 -1.1201 10 6 8.0471 -0.8260 -3.4292 11 1 8.0810 -0.0286 -4.1715 12 6 7.2552 -2.0369 -3.9713 13 6 8.2866 -3.1870 -3.9786 14 8 9.5720 -2.5326 -4.0511 15 6 9.4632 -1.3876 -3.1731 16 1 9.5672 -1.6945 -2.1325 17 6 10.5229 -0.3425 -3.5278 18 6 3.9907 2.7472 0.5960 19 6 3.5118 2.9811 2.0056 20 8 2.8315 2.1450 2.5617 21 7 3.8395 4.1195 2.6485 22 6 3.4035 4.3325 3.9306 23 1 2.7971 3.5884 4.4255 24 6 3.7418 5.5059 4.5936 25 7 4.4792 6.4117 3.9914 26 14 3.1471 5.7965 6.3404 27 1 3.6658 4.7223 7.2250 28 1 3.6409 7.1126 6.8190 29 1 1.6624 5.7851 6.3663 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6038 1.9821 0.8407 36 1 1.7533 1.9293 -0.9322 37 1 4.1507 1.9377 -1.8136 38 1 3.5781 0.2643 -1.6132 39 1 5.5703 -0.1898 -0.1502 40 1 6.1609 1.4513 -0.5051 41 1 5.6500 0.1402 -2.9540 42 1 6.8976 -1.8382 -4.9816 43 1 6.4223 -2.2757 -3.3100 44 1 8.2096 -3.7716 -3.0619 45 1 8.1364 -3.8258 -4.8489 46 1 10.3766 0.5460 -2.9135 47 1 11.5151 -0.7535 -3.3418 48 1 10.4316 -0.0754 -4.5806 49 1 5.0805 2.7569 0.5762 50 1 3.6085 3.5352 -0.0530 51 1 4.3832 4.7884 2.2037 52 1 4.7157 7.2305 4.4543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731870690.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:55 Heat of formation + Delta-G solvation = -123.993580 kcal Electronic energy + Delta-G solvation = -30131.819919 eV Core-core repulsion = 25938.054985 eV Total energy + Delta-G solvation = -4193.764935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.77316 -39.05339 -38.57068 -36.98137 -35.01830 -33.85662 -33.19556 -32.71946 -31.82408 -31.21081 -29.35963 -27.58892 -26.71116 -24.95529 -24.00546 -22.69247 -22.25753 -21.72435 -20.80085 -20.12092 -19.17052 -17.88545 -17.83439 -16.59623 -16.40281 -16.10533 -15.75050 -15.56930 -15.54461 -14.94547 -14.78585 -14.54974 -14.33539 -14.11917 -13.84560 -13.70854 -13.53259 -13.44881 -13.06064 -12.83758 -12.62308 -12.48678 -12.12503 -12.10234 -11.78039 -11.68936 -11.64169 -11.53858 -11.47953 -11.42106 -11.19314 -11.13023 -10.95248 -10.63490 -10.43885 -10.32494 -10.22806 -10.20595 -9.91479 -9.45319 -9.23914 -8.44545 -8.00183 -7.92487 -6.40982 -3.81703 2.37602 2.80164 3.20484 3.26310 3.30576 3.48750 3.89543 3.98353 4.08937 4.22555 4.24772 4.39596 4.60301 4.75892 4.83760 4.86210 4.95410 5.04775 5.06692 5.17250 5.19701 5.24504 5.25683 5.33310 5.34841 5.39516 5.45882 5.52333 5.58196 5.64196 5.65962 5.74682 5.84781 5.86870 5.88164 5.97564 5.98966 6.04571 6.20992 6.26005 6.28299 6.45244 6.50382 6.54459 7.20908 7.23158 7.33442 7.55706 7.97537 8.06515 8.62153 9.18632 9.54914 10.06497 10.76749 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.002228 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.148098 B =12565.359731 C =14455.540712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.058 3.942 4 N -0.512 5.512 5 C 0.044 3.956 6 C 0.120 3.880 7 N -0.727 5.727 8 C 0.521 3.479 9 O -0.530 6.530 10 C -0.142 4.142 11 H 0.112 0.888 12 C -0.148 4.148 13 C 0.045 3.955 14 O -0.371 6.371 15 C 0.085 3.915 16 H 0.090 0.910 17 C -0.145 4.145 18 C 0.042 3.958 19 C 0.443 3.557 20 O -0.575 6.575 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.022 0.978 37 H 0.038 0.962 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.398 0.602 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.062 0.938 45 H 0.094 0.906 46 H 0.074 0.926 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.089 0.911 50 H 0.048 0.952 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.467 -13.094 -20.865 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.070 4.070 4 N -0.236 5.236 5 C -0.084 4.084 6 C -0.004 4.004 7 N -0.379 5.379 8 C 0.306 3.694 9 O -0.406 6.406 10 C -0.164 4.164 11 H 0.130 0.870 12 C -0.186 4.186 13 C -0.032 4.032 14 O -0.290 6.290 15 C 0.027 3.973 16 H 0.108 0.892 17 C -0.202 4.202 18 C -0.089 4.089 19 C 0.228 3.772 20 O -0.459 6.459 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.040 0.960 37 H 0.057 0.943 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.232 0.768 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.093 0.907 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.858 -13.870 -19.413 24.169 hybrid contribution -0.621 1.448 -0.339 1.612 sum 3.238 -12.422 -19.752 23.557 Atomic orbital electron populations 1.21718 0.96082 1.01180 1.01740 1.21426 0.94928 0.96703 1.01935 1.22250 0.86346 0.97590 1.00776 1.61414 1.06583 1.29449 1.26160 1.22256 0.94370 1.00118 0.91696 1.21388 0.92945 1.00453 0.85583 1.45938 1.14159 1.65186 1.12597 1.20253 0.81572 0.77392 0.90187 1.90749 1.61043 1.54531 1.34285 1.22773 0.97226 1.00030 0.96386 0.87032 1.22982 0.99028 0.93956 1.02598 1.23373 0.82485 0.94905 1.02388 1.89204 1.32614 1.40680 1.66533 1.22976 0.92321 0.86491 0.95522 0.89198 1.21792 0.98492 0.97804 1.02130 1.21947 1.00863 0.89823 0.96257 1.19684 0.85946 0.83865 0.87662 1.90510 1.42171 1.45087 1.68163 1.41864 1.47053 1.16869 1.14290 1.19637 1.30185 1.03491 0.89487 0.87961 1.25259 0.96914 0.95541 1.00228 1.69601 1.37231 1.09120 1.38393 0.85926 0.79031 0.77440 0.81870 1.19870 1.20999 1.19941 0.93011 0.92284 0.93382 0.93278 0.90700 0.88354 0.95953 0.94332 0.90256 0.90099 0.91148 0.76781 0.89557 0.89834 0.91969 0.88738 0.90750 0.91496 0.91914 0.89313 0.93411 0.77533 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.11 -1.49 5.98 -26.73 -0.16 -1.65 16 3 C 0.06 0.88 4.46 -3.82 -0.02 0.86 16 4 N -0.51 -7.96 4.10 -236.07 -0.97 -8.93 16 5 C 0.04 0.50 4.92 -3.82 -0.02 0.48 16 6 C 0.12 1.43 5.70 -4.04 -0.02 1.41 16 7 N -0.73 -6.62 5.44 -60.30 -0.33 -6.95 16 8 C 0.52 5.66 6.98 -10.98 -0.08 5.59 16 9 O -0.53 -8.16 15.48 5.56 0.09 -8.07 16 10 C -0.14 -1.13 3.06 -90.20 -0.28 -1.41 16 11 H 0.11 0.69 7.87 -51.93 -0.41 0.28 16 12 C -0.15 -0.88 6.67 -25.16 -0.17 -1.05 16 13 C 0.05 0.33 7.62 37.94 0.29 0.61 16 14 O -0.37 -3.70 11.37 -35.23 -0.40 -4.10 16 15 C 0.08 0.82 3.25 -25.95 -0.08 0.73 16 16 H 0.09 1.05 6.96 -51.93 -0.36 0.69 16 17 C -0.15 -1.22 9.52 37.16 0.35 -0.87 16 18 C 0.04 0.74 5.27 -4.98 -0.03 0.71 16 19 C 0.44 10.28 7.29 -10.99 -0.08 10.20 16 20 O -0.58 -15.12 14.12 5.54 0.08 -15.04 16 21 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.43 16 23 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 26 Si 0.93 21.13 29.55 -169.99 -5.02 16.10 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 33 H 0.05 0.55 6.91 -51.93 -0.36 0.19 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.10 1.87 5.85 -51.93 -0.30 1.56 16 36 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 37 H 0.04 0.39 8.00 -51.93 -0.42 -0.02 16 38 H 0.08 0.76 6.58 -51.93 -0.34 0.42 16 39 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.07 0.96 6.95 -51.93 -0.36 0.60 16 41 H 0.40 2.35 8.46 -40.82 -0.35 2.00 16 42 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.08 0.48 7.68 -51.93 -0.40 0.08 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.09 1.44 6.71 -51.93 -0.35 1.09 16 50 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 51 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 416.56 15.07 6.28 6.28 Total: -1.00 -33.30 416.56 -8.73 -42.03 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -8.96 Total: 10.52 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.16 Total: 6.31 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.63 Total: -54.03 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.24 Total: -27.22 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.30 -8.73 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731870690.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.959 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds