Wall clock time and date at job start Wed Apr 1 2020 01:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47262 * 2 1 4 4 N 1.46897 * 109.46883 * 174.89005 * 3 2 1 5 5 C 1.46904 * 111.00182 * 76.02803 * 4 3 2 6 6 C 1.52998 * 109.47051 * 199.54191 * 5 4 3 7 7 N 1.46499 * 109.46734 * 174.88816 * 6 5 4 8 8 C 1.34784 * 119.99686 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00067 * 359.97438 * 8 7 6 10 10 C 1.50701 * 119.99750 * 179.97438 * 8 7 6 11 11 H 1.08997 * 110.56745 * 61.22607 * 10 8 7 12 12 C 1.54505 * 110.51052 * 298.54459 * 10 8 7 13 13 C 1.54489 * 104.06160 * 241.35669 * 12 10 8 14 14 O 1.44421 * 104.89918 * 335.96449 * 13 12 10 15 15 C 1.44697 * 105.13816 * 40.49964 * 14 13 12 16 16 H 1.08991 * 110.45111 * 78.40553 * 15 14 13 17 17 C 1.53001 * 110.35105 * 200.67283 * 15 14 13 18 18 C 1.46902 * 110.99531 * 199.97602 * 4 3 2 19 19 C 1.50696 * 109.46887 * 66.05178 * 18 4 3 20 20 O 1.21295 * 120.00624 * 359.97438 * 19 18 4 21 21 N 1.34778 * 120.00150 * 179.97438 * 19 18 4 22 22 C 1.37095 * 120.00305 * 179.97438 * 21 19 18 23 23 H 1.07996 * 120.00217 * 359.97438 * 22 21 19 24 24 C 1.38958 * 120.00195 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99895 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00018 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46909 * 60.00247 * 26 24 22 28 28 H 1.48500 * 109.47130 * 179.97438 * 26 24 22 29 29 H 1.48496 * 109.47672 * 300.00348 * 26 24 22 30 30 H 1.08995 * 109.47238 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47170 * 299.99880 * 1 2 3 32 32 H 1.09008 * 109.47058 * 59.99598 * 1 2 3 33 33 H 1.09002 * 109.47170 * 240.00120 * 2 1 3 34 34 H 1.08996 * 109.47215 * 120.00034 * 2 1 3 35 35 H 1.08999 * 109.46774 * 54.88724 * 3 2 1 36 36 H 1.09003 * 109.46998 * 294.89119 * 3 2 1 37 37 H 1.09003 * 109.46993 * 79.54101 * 5 4 3 38 38 H 1.08998 * 109.46938 * 319.54064 * 5 4 3 39 39 H 1.08997 * 109.47212 * 54.88398 * 6 5 4 40 40 H 1.08996 * 109.46855 * 294.88075 * 6 5 4 41 41 H 0.97003 * 120.00459 * 359.97438 * 7 6 5 42 42 H 1.09004 * 110.51469 * 122.71434 * 12 10 8 43 43 H 1.09001 * 110.51485 * 359.97438 * 12 10 8 44 44 H 1.08997 * 110.37150 * 94.85414 * 13 12 10 45 45 H 1.08999 * 110.36940 * 217.08043 * 13 12 10 46 46 H 1.09001 * 109.46447 * 175.40931 * 17 15 14 47 47 H 1.08995 * 109.47351 * 295.40850 * 17 15 14 48 48 H 1.09004 * 109.47039 * 55.41385 * 17 15 14 49 49 H 1.09003 * 109.47145 * 186.04488 * 18 4 3 50 50 H 1.09000 * 109.47707 * 306.04661 * 18 4 3 51 51 H 0.96998 * 120.00126 * 0.02562 * 21 19 18 52 52 H 0.96993 * 119.99947 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5038 1.4443 0.1234 5 6 4.1398 1.0744 -1.1482 6 6 5.5752 0.6146 -0.8857 7 7 6.1691 0.1309 -2.1345 8 6 7.4364 -0.3279 -2.1447 9 8 8.0851 -0.3400 -1.1201 10 6 8.0471 -0.8260 -3.4292 11 1 8.0810 -0.0286 -4.1715 12 6 7.2552 -2.0369 -3.9713 13 6 8.2866 -3.1870 -3.9786 14 8 9.5720 -2.5326 -4.0511 15 6 9.4632 -1.3876 -3.1731 16 1 9.5672 -1.6945 -2.1325 17 6 10.5229 -0.3425 -3.5278 18 6 3.9907 2.7472 0.5960 19 6 3.5118 2.9811 2.0056 20 8 2.8315 2.1450 2.5617 21 7 3.8395 4.1195 2.6485 22 6 3.4035 4.3325 3.9306 23 1 2.7971 3.5884 4.4255 24 6 3.7418 5.5059 4.5936 25 7 4.4792 6.4117 3.9914 26 14 3.1471 5.7965 6.3404 27 1 3.6658 4.7223 7.2250 28 1 3.6409 7.1126 6.8190 29 1 1.6624 5.7851 6.3663 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 1.6038 1.9821 0.8407 36 1 1.7533 1.9293 -0.9322 37 1 4.1507 1.9377 -1.8136 38 1 3.5781 0.2643 -1.6132 39 1 5.5703 -0.1898 -0.1502 40 1 6.1609 1.4513 -0.5051 41 1 5.6500 0.1402 -2.9540 42 1 6.8976 -1.8382 -4.9816 43 1 6.4223 -2.2757 -3.3100 44 1 8.2096 -3.7716 -3.0619 45 1 8.1364 -3.8258 -4.8489 46 1 10.3766 0.5460 -2.9135 47 1 11.5151 -0.7535 -3.3418 48 1 10.4316 -0.0754 -4.5806 49 1 5.0805 2.7569 0.5762 50 1 3.6085 3.5352 -0.0530 51 1 4.3832 4.7884 2.2037 52 1 4.7157 7.2305 4.4543 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731870690.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:54 Heat of formation + Delta-G solvation = -149.812014 kcal Electronic energy + Delta-G solvation = -30132.939491 eV Core-core repulsion = 25938.054985 eV Total energy + Delta-G solvation = -4194.884506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.55360 -40.50890 -39.54337 -38.41007 -36.10252 -35.76461 -34.19950 -33.52651 -33.21610 -32.44491 -30.43099 -28.93207 -27.40989 -26.67943 -25.22296 -23.39747 -23.11995 -22.64164 -21.89196 -21.09885 -20.81463 -19.86354 -18.63984 -17.91927 -17.33375 -17.12457 -16.76008 -16.53499 -16.49298 -16.35072 -16.06768 -15.89193 -15.64319 -15.35414 -15.11666 -14.82245 -14.55192 -14.41095 -14.28112 -13.81978 -13.59116 -13.45524 -13.42843 -13.27993 -13.07265 -12.83253 -12.78341 -12.69435 -12.49116 -12.43229 -12.26125 -12.17834 -12.11509 -12.07658 -11.77267 -11.73028 -11.52838 -11.33231 -11.03659 -10.70207 -10.25849 -10.15025 -9.99231 -9.23174 -8.46353 -5.94659 1.38668 1.40313 1.51125 1.53554 1.94795 2.06506 2.28853 2.79251 2.91623 3.20629 3.36230 3.49089 3.61237 3.75314 3.87234 4.02135 4.07146 4.10796 4.19179 4.22520 4.30614 4.33917 4.38834 4.41487 4.48010 4.54394 4.57311 4.61661 4.64696 4.67577 4.80353 4.84779 4.94389 4.96350 4.97549 4.99781 5.03732 5.06455 5.20473 5.22479 5.35621 5.40706 5.42674 5.45006 5.80672 5.89836 6.09019 6.21628 6.49571 6.61037 7.13483 7.19558 7.57315 8.13225 8.71032 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011821 B = 0.002228 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.148098 B =12565.359731 C =14455.540712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C 0.061 3.939 4 N -0.534 5.534 5 C 0.054 3.946 6 C 0.128 3.872 7 N -0.707 5.707 8 C 0.518 3.482 9 O -0.583 6.583 10 C -0.133 4.133 11 H 0.139 0.861 12 C -0.139 4.139 13 C 0.035 3.965 14 O -0.387 6.387 15 C 0.079 3.921 16 H 0.059 0.941 17 C -0.143 4.143 18 C 0.056 3.944 19 C 0.441 3.559 20 O -0.610 6.610 21 N -0.577 5.577 22 C -0.330 4.330 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.991 3.009 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.270 1.270 30 H 0.067 0.933 31 H 0.034 0.966 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.105 0.895 39 H 0.053 0.947 40 H 0.050 0.950 41 H 0.419 0.581 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.052 0.948 45 H 0.117 0.883 46 H 0.068 0.932 47 H 0.062 0.938 48 H 0.079 0.921 49 H 0.101 0.899 50 H 0.071 0.929 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.665 -13.258 -23.966 27.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.144 4.144 3 C -0.067 4.067 4 N -0.259 5.259 5 C -0.074 4.074 6 C 0.003 3.997 7 N -0.361 5.361 8 C 0.305 3.695 9 O -0.463 6.463 10 C -0.155 4.155 11 H 0.156 0.844 12 C -0.177 4.177 13 C -0.041 4.041 14 O -0.307 6.307 15 C 0.021 3.979 16 H 0.077 0.923 17 C -0.200 4.200 18 C -0.075 4.075 19 C 0.228 3.772 20 O -0.496 6.496 21 N -0.214 5.214 22 C -0.460 4.460 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.195 1.195 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.123 0.877 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.257 0.743 42 H 0.136 0.864 43 H 0.105 0.895 44 H 0.070 0.930 45 H 0.135 0.865 46 H 0.087 0.913 47 H 0.081 0.919 48 H 0.098 0.902 49 H 0.119 0.881 50 H 0.089 0.911 51 H 0.228 0.772 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.034 -14.037 -22.576 26.756 hybrid contribution -0.362 1.399 0.590 1.561 sum 2.672 -12.637 -21.985 25.499 Atomic orbital electron populations 1.21695 0.94961 1.02203 1.01514 1.21381 0.95888 0.95334 1.01809 1.22164 0.85983 0.98501 1.00031 1.61327 1.07113 1.28309 1.29163 1.22266 0.93373 1.01826 0.89960 1.21118 0.93541 0.98795 0.86251 1.45701 1.13753 1.64080 1.12519 1.20831 0.81585 0.76500 0.90546 1.90737 1.62432 1.56683 1.36455 1.22759 0.96031 1.01538 0.95126 0.84356 1.23019 0.98286 0.92057 1.04297 1.23605 0.81866 0.95581 1.03057 1.89187 1.34334 1.40939 1.66239 1.22914 0.94001 0.86924 0.94059 0.92323 1.21772 0.98024 0.97193 1.02988 1.21777 1.01400 0.91839 0.92500 1.20766 0.84322 0.82437 0.89652 1.90487 1.43372 1.45996 1.69739 1.41949 1.47730 1.17834 1.13928 1.19599 1.31440 1.03875 0.91088 0.90340 1.26028 0.96705 0.94857 1.03806 1.69665 1.37526 1.09375 1.39728 0.85014 0.78629 0.77678 0.77179 1.19920 1.19510 1.19538 0.91378 0.94629 0.91473 0.90251 0.93834 0.92908 0.93278 0.91813 0.87657 0.92876 0.93143 0.74304 0.86417 0.89467 0.92959 0.86456 0.91308 0.91864 0.90228 0.88116 0.91077 0.77170 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.91 71.98 0.71 -2.49 16 2 C -0.11 -2.66 5.98 30.60 0.18 -2.48 16 3 C 0.06 1.77 4.46 86.31 0.39 2.16 16 4 N -0.53 -15.98 4.10 -900.78 -3.70 -19.68 16 5 C 0.05 1.04 4.92 86.30 0.42 1.46 16 6 C 0.13 2.89 5.70 86.38 0.49 3.38 16 7 N -0.71 -11.21 5.44 -463.07 -2.52 -13.73 16 8 C 0.52 10.72 6.98 87.66 0.61 11.33 16 9 O -0.58 -18.51 15.48 -3.01 -0.05 -18.55 16 10 C -0.13 -1.82 3.06 -10.52 -0.03 -1.85 16 11 H 0.14 1.19 7.87 -2.39 -0.02 1.17 16 12 C -0.14 -1.20 6.67 31.61 0.21 -0.99 16 13 C 0.04 0.44 7.62 72.49 0.55 0.99 16 14 O -0.39 -7.31 11.37 -148.98 -1.69 -9.01 16 15 C 0.08 1.50 3.25 31.10 0.10 1.60 16 16 H 0.06 1.47 6.96 -2.39 -0.02 1.45 16 17 C -0.14 -2.32 9.52 71.98 0.69 -1.64 16 18 C 0.06 1.91 5.27 85.56 0.45 2.36 16 19 C 0.44 21.04 7.29 87.66 0.64 21.68 16 20 O -0.61 -33.53 14.12 -3.08 -0.04 -33.57 16 21 N -0.58 -29.98 5.29 -306.98 -1.62 -31.60 16 22 C -0.33 -18.99 9.68 84.04 0.81 -18.17 16 23 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 25 N -0.92 -50.52 13.05 21.67 0.28 -50.23 16 26 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 29 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.08 1.50 6.91 -2.39 -0.02 1.49 16 34 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 2.05 5.85 -2.39 -0.01 2.03 16 36 H 0.05 1.16 8.00 -2.39 -0.02 1.14 16 37 H 0.06 0.99 8.00 -2.39 -0.02 0.97 16 38 H 0.11 1.54 6.58 -2.39 -0.02 1.53 16 39 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.05 1.36 6.95 -2.39 -0.02 1.34 16 41 H 0.42 3.19 8.46 -92.71 -0.78 2.40 16 42 H 0.12 0.35 8.14 -2.38 -0.02 0.33 16 43 H 0.09 0.72 7.68 -2.39 -0.02 0.70 16 44 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.10 3.21 6.71 -2.39 -0.02 3.19 16 50 H 0.07 2.11 8.12 -2.39 -0.02 2.09 16 51 H 0.39 19.58 7.90 -92.71 -0.73 18.85 16 52 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -77.35 416.56 -1.20 -78.55 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: -0.59 Total: 35.13 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 6.70 Total: 17.02 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -7.56 Total: -115.25 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -1.78 Total: -61.13 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.35 -1.20 -78.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731870690.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.259 kcal (2) G-P(sol) polarization free energy of solvation -77.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds