Wall clock time and date at job start Wed Apr 1 2020 00:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 H 1.09000 * 109.47503 * 54.99750 * 3 2 1 5 5 C 1.52999 * 109.47087 * 294.99426 * 3 2 1 6 6 C 1.52997 * 109.46725 * 174.99984 * 3 2 1 7 7 H 1.09000 * 109.47442 * 63.05300 * 6 3 2 8 8 O 1.42896 * 109.47521 * 303.04802 * 6 3 2 9 9 C 1.42901 * 114.00314 * 150.00150 * 8 6 3 10 10 C 1.50704 * 109.46792 * 183.05318 * 6 3 2 11 11 O 1.21281 * 120.00066 * 289.29072 * 10 6 3 12 12 N 1.34783 * 120.00106 * 109.29222 * 10 6 3 13 13 C 1.46499 * 120.00142 * 175.81756 * 12 10 6 14 14 C 1.52997 * 109.47024 * 180.02562 * 13 12 10 15 15 C 1.53940 * 113.73147 * 271.72426 * 14 13 12 16 16 N 1.47954 * 86.18128 * 221.92107 * 15 14 13 17 17 C 1.46905 * 111.00042 * 137.58376 * 16 15 14 18 18 C 1.50694 * 109.47280 * 70.63870 * 17 16 15 19 19 O 1.21300 * 119.99883 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00000 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99810 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99879 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00113 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99521 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00088 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47263 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47311 * 119.99596 * 25 23 21 28 28 H 1.48507 * 109.46917 * 239.99788 * 25 23 21 29 29 C 1.47962 * 90.76159 * 24.69222 * 16 15 14 30 30 H 1.08996 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47254 * 300.00183 * 1 2 3 32 32 H 1.09007 * 109.47237 * 60.00211 * 1 2 3 33 33 H 1.08998 * 109.47254 * 239.99817 * 2 1 3 34 34 H 1.08998 * 109.46982 * 119.99844 * 2 1 3 35 35 H 1.08993 * 109.47510 * 299.02151 * 5 3 2 36 36 H 1.09005 * 109.46648 * 59.02553 * 5 3 2 37 37 H 1.08999 * 109.47478 * 179.01752 * 5 3 2 38 38 H 1.08999 * 109.47200 * 59.99986 * 9 8 6 39 39 H 1.08999 * 109.47181 * 180.02562 * 9 8 6 40 40 H 1.09006 * 109.47099 * 300.00375 * 9 8 6 41 41 H 0.96998 * 119.99973 * 355.81866 * 12 10 6 42 42 H 1.09006 * 109.46997 * 299.99716 * 13 12 10 43 43 H 1.08996 * 109.47182 * 59.99989 * 13 12 10 44 44 H 1.08993 * 112.94229 * 43.42847 * 14 13 12 45 45 H 1.09000 * 113.75968 * 336.24323 * 15 14 13 46 46 H 1.08999 * 113.76114 * 107.60117 * 15 14 13 47 47 H 1.09000 * 109.47268 * 190.64084 * 17 16 15 48 48 H 1.09001 * 109.46770 * 310.64070 * 17 16 15 49 49 H 0.96992 * 120.00277 * 0.02562 * 20 18 17 50 50 H 0.97005 * 119.99930 * 180.02562 * 24 23 21 51 51 H 1.09005 * 113.75608 * 220.99022 * 29 16 15 52 52 H 1.09000 * 113.75896 * 89.63003 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5647 1.4443 0.1257 7 1 4.0016 0.9526 -0.7435 8 8 3.9458 0.7433 1.3112 9 6 5.2179 0.0984 1.2216 10 6 4.0608 2.8653 0.2012 11 8 4.0155 3.5764 -0.7803 12 7 4.5550 3.3460 1.3594 13 6 5.1213 4.6962 1.4098 14 6 5.6078 4.9924 2.8298 15 6 4.5241 5.5936 3.7431 16 7 5.5816 6.5060 4.2312 17 6 5.0721 7.8770 4.3680 18 6 4.1149 7.9437 5.5300 19 8 3.8806 6.9471 6.1806 20 7 3.5192 9.1106 5.8463 21 6 2.6488 9.1713 6.9038 22 1 2.4402 8.2839 7.4831 23 6 2.0342 10.3741 7.2297 24 7 2.2878 11.4536 6.5245 25 14 0.8489 10.4570 8.6709 26 1 0.7363 9.1152 9.2971 27 1 1.3543 11.4301 9.6723 28 1 -0.4869 10.8914 8.1888 29 6 6.3330 6.3432 2.9670 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0842 1.5978 -2.1482 36 1 0.5498 2.1097 -1.4053 37 1 1.9834 3.1594 -1.3001 38 1 5.9897 0.8429 1.0261 39 1 5.4338 -0.4113 2.1606 40 1 5.2004 -0.6286 0.4096 41 1 4.5356 2.7980 2.1595 42 1 5.9603 4.7644 0.7171 43 1 4.3578 5.4212 1.1282 44 1 6.1470 4.1575 3.2771 45 1 3.7240 6.0983 3.2017 46 1 4.1559 4.9025 4.5014 47 1 5.9047 8.5583 4.5435 48 1 4.5537 8.1649 3.4533 49 1 3.7063 9.9073 5.3258 50 1 1.8590 12.2934 6.7521 51 1 7.4104 6.2511 3.1053 52 1 6.0620 7.0673 2.1987 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732129699.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:49 Heat of formation + Delta-G solvation = -95.779488 kcal Electronic energy + Delta-G solvation = -30166.882109 eV Core-core repulsion = 25974.340629 eV Total energy + Delta-G solvation = -4192.541480 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.66870 -39.92363 -38.07461 -37.67287 -36.17773 -34.78915 -33.88244 -31.38889 -31.00863 -30.52016 -28.29362 -27.29110 -26.00845 -25.96031 -24.93727 -24.21911 -22.48106 -20.87125 -20.44227 -19.56007 -19.19688 -17.96963 -17.73831 -17.29441 -16.36621 -16.18877 -15.93885 -15.38568 -15.18958 -15.13562 -15.06580 -14.58389 -14.48834 -14.18686 -13.88722 -13.84443 -13.61499 -13.29235 -12.99302 -12.92246 -12.64291 -12.49409 -12.21933 -12.10383 -11.96916 -11.79084 -11.71897 -11.48902 -11.39204 -11.29652 -11.07651 -11.01165 -10.87685 -10.84381 -10.60699 -10.58069 -10.33982 -10.21624 -9.55152 -9.51025 -9.20272 -8.64876 -8.22373 -7.96019 -6.41429 -3.82188 2.33967 2.92558 3.16508 3.17684 3.26994 3.34301 3.89407 3.99731 4.20939 4.29975 4.39881 4.44390 4.57839 4.66311 4.76961 4.81126 4.92379 4.94967 4.96985 5.12948 5.15375 5.23497 5.24281 5.27112 5.29544 5.36988 5.40538 5.42108 5.53790 5.61450 5.68987 5.69352 5.73840 5.75530 5.82144 5.84342 5.85619 6.02367 6.05825 6.13745 6.24861 6.26760 6.35451 6.50992 6.63027 7.20751 7.33954 7.55621 7.99610 8.06256 8.61673 9.18343 9.54556 10.06175 10.76465 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.002114 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.727714 B =13241.800649 C =14395.523762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.114 4.114 3 C -0.080 4.080 4 H 0.082 0.918 5 C -0.154 4.154 6 C 0.079 3.921 7 H 0.094 0.906 8 O -0.375 6.375 9 C 0.024 3.976 10 C 0.494 3.506 11 O -0.538 6.538 12 N -0.716 5.716 13 C 0.126 3.874 14 C -0.134 4.134 15 C 0.027 3.973 16 N -0.453 5.453 17 C 0.010 3.990 18 C 0.444 3.556 19 O -0.579 6.579 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.281 1.281 28 H -0.282 1.282 29 C 0.008 3.992 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.044 0.956 39 H 0.093 0.907 40 H 0.045 0.955 41 H 0.409 0.591 42 H 0.069 0.931 43 H 0.070 0.930 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.090 0.910 48 H 0.054 0.946 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.090 0.910 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.817 -20.865 -16.463 27.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.152 4.152 3 C -0.099 4.099 4 H 0.101 0.899 5 C -0.211 4.211 6 C 0.018 3.982 7 H 0.111 0.889 8 O -0.293 6.293 9 C -0.072 4.072 10 C 0.280 3.720 11 O -0.416 6.416 12 N -0.369 5.369 13 C 0.002 3.998 14 C -0.153 4.153 15 C -0.102 4.102 16 N -0.175 5.175 17 C -0.122 4.122 18 C 0.229 3.771 19 O -0.463 6.463 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.543 5.543 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.207 1.207 28 H -0.208 1.208 29 C -0.121 4.121 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.062 0.938 39 H 0.112 0.888 40 H 0.064 0.936 41 H 0.245 0.755 42 H 0.087 0.913 43 H 0.088 0.912 44 H 0.122 0.878 45 H 0.085 0.915 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.109 0.891 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.771 -20.932 -15.878 26.703 hybrid contribution -0.611 0.846 -0.138 1.052 sum 4.160 -20.086 -16.016 26.025 Atomic orbital electron populations 1.21822 0.95537 1.01631 1.02144 1.21494 0.96098 0.95165 1.02444 1.21136 0.90592 0.98062 1.00133 0.89938 1.21974 1.01478 1.02192 0.95484 1.22513 0.97490 0.88732 0.89429 0.88852 1.87940 1.36650 1.68858 1.35857 1.22936 0.84699 0.96557 1.03042 1.21199 0.77545 0.90086 0.83205 1.90705 1.55229 1.59589 1.36088 1.46018 1.61283 1.17058 1.12523 1.21461 0.98180 0.83543 0.96569 1.23335 0.98897 0.98792 0.94257 1.23861 0.93493 0.96185 0.96638 1.68405 1.14239 1.05906 1.28994 1.22465 0.99015 0.92548 0.98188 1.19689 0.85147 0.84689 0.87559 1.90519 1.66069 1.35233 1.54492 1.41882 1.39683 1.09210 1.29417 1.19746 1.19075 0.96773 1.07127 0.87896 1.25266 0.98780 0.94880 0.99092 1.69622 1.44155 1.00351 1.40217 0.85803 0.79505 0.78518 0.80543 1.19215 1.20734 1.20765 1.23965 1.00321 0.95246 0.92599 0.92743 0.92505 0.92478 0.92213 0.90853 0.92594 0.91874 0.90684 0.93756 0.88847 0.93591 0.75501 0.91314 0.91187 0.87768 0.91492 0.88762 0.89140 0.92811 0.77503 0.91931 0.89146 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.67 37.16 0.36 -0.68 16 2 C -0.11 -0.81 5.30 -26.73 -0.14 -0.95 16 3 C -0.08 -0.68 2.16 -90.62 -0.20 -0.88 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.15 -1.36 8.53 37.16 0.32 -1.04 16 6 C 0.08 0.68 2.20 -27.88 -0.06 0.62 16 7 H 0.09 0.72 7.79 -51.93 -0.40 0.31 16 8 O -0.37 -2.96 8.25 -35.23 -0.29 -3.25 16 9 C 0.02 0.13 10.81 101.05 1.09 1.23 16 10 C 0.49 5.49 6.92 -10.98 -0.08 5.41 16 11 O -0.54 -7.66 14.86 5.56 0.08 -7.57 16 12 N -0.72 -7.23 5.48 -60.29 -0.33 -7.56 16 13 C 0.13 1.34 5.53 -4.04 -0.02 1.31 16 14 C -0.13 -1.47 3.94 -89.69 -0.35 -1.83 16 15 C 0.03 0.41 6.31 -2.77 -0.02 0.39 16 16 N -0.45 -7.46 5.95 -239.73 -1.43 -8.89 16 17 C 0.01 0.18 5.31 -4.98 -0.03 0.15 16 18 C 0.44 10.64 7.59 -10.99 -0.08 10.56 16 19 O -0.58 -15.83 15.13 5.54 0.08 -15.75 16 20 N -0.57 -14.53 5.29 -10.96 -0.06 -14.59 16 21 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 22 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 25 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 29 C 0.01 0.10 7.54 -2.77 -0.02 0.08 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.37 6.54 -51.93 -0.34 0.03 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.55 7.45 -51.93 -0.39 0.16 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.49 6.52 -51.93 -0.34 0.16 16 37 H 0.07 0.84 6.04 -51.93 -0.31 0.53 16 38 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.05 0.21 8.09 -51.93 -0.42 -0.21 16 41 H 0.41 3.70 7.37 -40.82 -0.30 3.40 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.85 7.84 -51.93 -0.41 0.44 16 44 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.07 1.05 7.53 -51.93 -0.39 0.66 16 46 H 0.09 1.59 8.09 -51.93 -0.42 1.17 16 47 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 48 H 0.05 0.88 7.69 -51.93 -0.40 0.48 16 49 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 51 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 52 H 0.07 0.77 7.75 -51.93 -0.40 0.36 16 LS Contribution 417.48 15.07 6.29 6.29 Total: -1.00 -33.27 417.48 -8.42 -41.69 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -9.01 Total: 11.16 kcal Atomic # 6 Polarization: 5.79 SS G_CDS: 0.53 Total: 6.32 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -1.09 Total: -55.09 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.12 Total: -26.58 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -33.27 -8.42 -41.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732129699.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.086 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds