Wall clock time and date at job start Wed Apr 1 2020 00:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46958 * 2 1 4 4 H 1.09000 * 109.47503 * 54.99750 * 3 2 1 5 5 C 1.52999 * 109.47087 * 294.99426 * 3 2 1 6 6 C 1.52997 * 109.46725 * 174.99984 * 3 2 1 7 7 H 1.09000 * 109.47442 * 63.05300 * 6 3 2 8 8 O 1.42896 * 109.47521 * 303.04802 * 6 3 2 9 9 C 1.42901 * 114.00314 * 150.00150 * 8 6 3 10 10 C 1.50704 * 109.46792 * 183.05318 * 6 3 2 11 11 O 1.21281 * 120.00066 * 289.29072 * 10 6 3 12 12 N 1.34783 * 120.00106 * 109.29222 * 10 6 3 13 13 C 1.46499 * 120.00142 * 175.81756 * 12 10 6 14 14 C 1.52997 * 109.47024 * 180.02562 * 13 12 10 15 15 C 1.53940 * 113.73147 * 271.72426 * 14 13 12 16 16 N 1.47954 * 86.18128 * 221.92107 * 15 14 13 17 17 C 1.46905 * 111.00042 * 137.58376 * 16 15 14 18 18 C 1.50694 * 109.47280 * 70.63870 * 17 16 15 19 19 O 1.21300 * 119.99883 * 0.02562 * 18 17 16 20 20 N 1.34776 * 120.00000 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99810 * 180.02562 * 20 18 17 22 22 H 1.08005 * 119.99879 * 359.97438 * 21 20 18 23 23 C 1.38954 * 120.00113 * 180.02562 * 21 20 18 24 24 N 1.31406 * 119.99521 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 120.00088 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47263 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47311 * 119.99596 * 25 23 21 28 28 H 1.48507 * 109.46917 * 239.99788 * 25 23 21 29 29 C 1.47962 * 90.76159 * 24.69222 * 16 15 14 30 30 H 1.08996 * 109.47248 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47254 * 300.00183 * 1 2 3 32 32 H 1.09007 * 109.47237 * 60.00211 * 1 2 3 33 33 H 1.08998 * 109.47254 * 239.99817 * 2 1 3 34 34 H 1.08998 * 109.46982 * 119.99844 * 2 1 3 35 35 H 1.08993 * 109.47510 * 299.02151 * 5 3 2 36 36 H 1.09005 * 109.46648 * 59.02553 * 5 3 2 37 37 H 1.08999 * 109.47478 * 179.01752 * 5 3 2 38 38 H 1.08999 * 109.47200 * 59.99986 * 9 8 6 39 39 H 1.08999 * 109.47181 * 180.02562 * 9 8 6 40 40 H 1.09006 * 109.47099 * 300.00375 * 9 8 6 41 41 H 0.96998 * 119.99973 * 355.81866 * 12 10 6 42 42 H 1.09006 * 109.46997 * 299.99716 * 13 12 10 43 43 H 1.08996 * 109.47182 * 59.99989 * 13 12 10 44 44 H 1.08993 * 112.94229 * 43.42847 * 14 13 12 45 45 H 1.09000 * 113.75968 * 336.24323 * 15 14 13 46 46 H 1.08999 * 113.76114 * 107.60117 * 15 14 13 47 47 H 1.09000 * 109.47268 * 190.64084 * 17 16 15 48 48 H 1.09001 * 109.46770 * 310.64070 * 17 16 15 49 49 H 0.96992 * 120.00277 * 0.02562 * 20 18 17 50 50 H 0.97005 * 119.99930 * 180.02562 * 24 23 21 51 51 H 1.09005 * 113.75608 * 220.99022 * 29 16 15 52 52 H 1.09000 * 113.75896 * 89.63003 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5647 1.4443 0.1257 7 1 4.0016 0.9526 -0.7435 8 8 3.9458 0.7433 1.3112 9 6 5.2179 0.0984 1.2216 10 6 4.0608 2.8653 0.2012 11 8 4.0155 3.5764 -0.7803 12 7 4.5550 3.3460 1.3594 13 6 5.1213 4.6962 1.4098 14 6 5.6078 4.9924 2.8298 15 6 4.5241 5.5936 3.7431 16 7 5.5816 6.5060 4.2312 17 6 5.0721 7.8770 4.3680 18 6 4.1149 7.9437 5.5300 19 8 3.8806 6.9471 6.1806 20 7 3.5192 9.1106 5.8463 21 6 2.6488 9.1713 6.9038 22 1 2.4402 8.2839 7.4831 23 6 2.0342 10.3741 7.2297 24 7 2.2878 11.4536 6.5245 25 14 0.8489 10.4570 8.6709 26 1 0.7363 9.1152 9.2971 27 1 1.3543 11.4301 9.6723 28 1 -0.4869 10.8914 8.1888 29 6 6.3330 6.3432 2.9670 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0842 1.5978 -2.1482 36 1 0.5498 2.1097 -1.4053 37 1 1.9834 3.1594 -1.3001 38 1 5.9897 0.8429 1.0261 39 1 5.4338 -0.4113 2.1606 40 1 5.2004 -0.6286 0.4096 41 1 4.5356 2.7980 2.1595 42 1 5.9603 4.7644 0.7171 43 1 4.3578 5.4212 1.1282 44 1 6.1470 4.1575 3.2771 45 1 3.7240 6.0983 3.2017 46 1 4.1559 4.9025 4.5014 47 1 5.9047 8.5583 4.5435 48 1 4.5537 8.1649 3.4533 49 1 3.7063 9.9073 5.3258 50 1 1.8590 12.2934 6.7521 51 1 7.4104 6.2511 3.1053 52 1 6.0620 7.0673 2.1987 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732129699.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:48 Heat of formation + Delta-G solvation = -121.695967 kcal Electronic energy + Delta-G solvation = -30168.005932 eV Core-core repulsion = 25974.340629 eV Total energy + Delta-G solvation = -4193.665303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.60217 -41.04344 -39.57744 -38.72984 -36.82792 -36.02145 -35.63858 -33.34304 -32.18704 -31.32015 -29.17004 -28.26454 -27.08904 -26.90524 -26.37077 -25.05588 -23.71449 -21.69677 -21.15232 -21.02034 -20.53640 -19.91576 -18.62812 -18.04558 -17.86815 -17.06019 -16.94741 -16.68552 -16.39552 -16.32794 -16.09940 -15.73596 -15.59974 -15.48757 -15.08312 -14.87518 -14.57512 -14.43126 -14.17627 -13.72970 -13.60795 -13.56256 -13.46143 -13.27612 -13.08892 -12.89139 -12.81095 -12.61892 -12.44461 -12.37063 -12.28629 -12.13462 -12.07421 -11.75607 -11.69067 -11.63929 -11.51951 -11.46005 -11.43742 -10.35902 -10.34430 -10.09439 -10.04040 -9.69132 -8.49122 -5.97996 1.34646 1.39788 1.48063 1.54226 2.01977 2.11997 2.27139 2.58807 2.80730 3.17201 3.24584 3.42844 3.61846 3.69274 3.75546 3.88845 4.14819 4.17126 4.18835 4.22471 4.29128 4.38507 4.46750 4.48062 4.50411 4.54946 4.55978 4.60595 4.62476 4.67020 4.68626 4.79363 4.83265 4.87697 4.90613 5.04865 5.11548 5.16810 5.22011 5.26191 5.36721 5.38821 5.41215 5.46305 5.55192 5.88261 5.92749 6.06186 6.52197 6.57384 7.10147 7.15428 7.52981 8.08630 8.68645 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.002114 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.727714 B =13241.800649 C =14395.523762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.079 4.079 4 H 0.066 0.934 5 C -0.149 4.149 6 C 0.087 3.913 7 H 0.107 0.893 8 O -0.383 6.383 9 C 0.018 3.982 10 C 0.491 3.509 11 O -0.572 6.572 12 N -0.712 5.712 13 C 0.133 3.867 14 C -0.105 4.105 15 C 0.019 3.981 16 N -0.480 5.480 17 C 0.022 3.978 18 C 0.440 3.560 19 O -0.618 6.618 20 N -0.575 5.575 21 C -0.332 4.332 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.016 3.984 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.044 0.956 39 H 0.106 0.894 40 H 0.059 0.941 41 H 0.414 0.586 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.119 0.881 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.110 0.890 48 H 0.074 0.926 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.113 0.887 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 -21.744 -17.285 28.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.099 4.099 4 H 0.084 0.916 5 C -0.207 4.207 6 C 0.026 3.974 7 H 0.125 0.875 8 O -0.301 6.301 9 C -0.078 4.078 10 C 0.277 3.723 11 O -0.453 6.453 12 N -0.364 5.364 13 C 0.009 3.991 14 C -0.124 4.124 15 C -0.110 4.110 16 N -0.203 5.203 17 C -0.109 4.109 18 C 0.227 3.773 19 O -0.504 6.504 20 N -0.213 5.213 21 C -0.462 4.462 22 H 0.096 0.904 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.195 1.195 28 H -0.195 1.195 29 C -0.112 4.112 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.252 0.748 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.137 0.863 45 H 0.074 0.926 46 H 0.087 0.913 47 H 0.128 0.872 48 H 0.092 0.908 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.131 0.869 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 5.612 -21.808 -16.705 28.038 hybrid contribution -0.832 1.085 0.119 1.373 sum 4.780 -20.723 -16.585 26.969 Atomic orbital electron populations 1.21830 0.95354 1.02185 1.01828 1.21441 0.96198 0.93957 1.02915 1.21121 0.90626 0.98884 0.99227 0.91581 1.21914 1.01994 1.00672 0.96079 1.22416 0.97378 0.87359 0.90258 0.87530 1.87941 1.37858 1.68798 1.35544 1.23123 0.83577 0.96775 1.04337 1.21689 0.76903 0.90954 0.82737 1.90689 1.56635 1.60708 1.37224 1.46012 1.60822 1.16907 1.12655 1.21352 0.98068 0.83447 0.96265 1.23133 0.96670 0.99079 0.93509 1.23813 0.94198 0.96162 0.96872 1.68404 1.14976 1.04798 1.32150 1.22360 0.98187 0.94413 0.95982 1.20767 0.84842 0.83412 0.88284 1.90487 1.67308 1.36403 1.56213 1.41963 1.39968 1.10031 1.29293 1.19682 1.21240 0.96620 1.08637 0.90430 1.26060 0.99814 0.94121 1.01378 1.69678 1.44610 1.00746 1.41143 0.84866 0.77690 0.78283 0.77470 1.19802 1.19474 1.19541 1.24085 1.01092 0.95473 0.90588 0.91749 0.93390 0.92259 0.90982 0.91042 0.91703 0.91093 0.93320 0.93747 0.87612 0.92262 0.74824 0.90083 0.92792 0.86262 0.92580 0.91349 0.87217 0.90841 0.77047 0.91271 0.86927 0.89680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.67 71.98 0.70 -1.22 16 2 C -0.11 -1.38 5.30 30.59 0.16 -1.21 16 3 C -0.08 -1.31 2.16 -10.79 -0.02 -1.33 16 4 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.15 -2.60 8.53 71.98 0.61 -1.98 16 6 C 0.09 1.41 2.20 29.85 0.07 1.48 16 7 H 0.11 1.45 7.79 -2.39 -0.02 1.43 16 8 O -0.38 -5.53 8.25 -148.98 -1.23 -6.76 16 9 C 0.02 0.16 10.81 113.37 1.23 1.39 16 10 C 0.49 10.65 6.92 87.66 0.61 11.26 16 11 O -0.57 -16.26 14.86 -3.03 -0.05 -16.30 16 12 N -0.71 -13.80 5.48 -463.05 -2.54 -16.34 16 13 C 0.13 2.64 5.53 86.38 0.48 3.12 16 14 C -0.10 -2.14 3.94 -10.15 -0.04 -2.18 16 15 C 0.02 0.57 6.31 86.41 0.55 1.11 16 16 N -0.48 -15.35 5.95 -912.38 -5.43 -20.78 16 17 C 0.02 0.78 5.31 85.55 0.45 1.24 16 18 C 0.44 21.50 7.59 87.66 0.67 22.17 16 19 O -0.62 -34.96 15.13 -3.09 -0.05 -35.01 16 20 N -0.58 -30.26 5.29 -306.97 -1.62 -31.88 16 21 C -0.33 -19.24 9.68 84.04 0.81 -18.43 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.40 13.05 21.66 0.28 -50.11 16 25 Si 0.99 43.56 29.55 68.60 2.03 45.59 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 29 C 0.02 0.34 7.54 86.40 0.65 0.99 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.70 6.54 -2.38 -0.02 0.69 16 33 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.07 0.96 7.45 -2.39 -0.02 0.94 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.08 6.52 -2.38 -0.02 1.07 16 37 H 0.05 1.12 6.04 -2.39 -0.01 1.11 16 38 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 39 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.06 0.39 8.09 -2.38 -0.02 0.37 16 41 H 0.41 7.12 7.37 -92.71 -0.68 6.44 16 42 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.05 1.28 7.84 -2.39 -0.02 1.26 16 44 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 45 H 0.06 1.81 7.53 -2.39 -0.02 1.79 16 46 H 0.07 2.41 8.09 -2.39 -0.02 2.39 16 47 H 0.11 3.45 8.14 -2.39 -0.02 3.43 16 48 H 0.07 2.31 7.69 -2.39 -0.02 2.29 16 49 H 0.40 19.77 7.90 -92.71 -0.73 19.03 16 50 H 0.28 14.17 8.31 -92.70 -0.77 13.40 16 51 H 0.11 1.94 8.14 -2.38 -0.02 1.92 16 52 H 0.09 1.59 7.75 -2.39 -0.02 1.57 16 Total: -1.00 -73.55 417.48 -1.71 -75.26 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: -0.49 Total: 40.25 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: 7.38 Total: 16.09 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -9.30 Total: -119.11 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -1.32 Total: -58.07 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Total: -73.55 -1.71 -75.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732129699.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.436 kcal (2) G-P(sol) polarization free energy of solvation -73.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds