Wall clock time and date at job start Wed Apr 1 2020 01:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47089 * 2 1 4 4 C 1.42907 * 114.00190 * 184.44738 * 3 2 1 5 5 H 1.09000 * 109.46668 * 329.79841 * 4 3 2 6 6 C 1.52994 * 109.47228 * 209.79386 * 4 3 2 7 7 C 1.53006 * 109.46843 * 64.47280 * 6 4 3 8 8 C 1.50707 * 109.46720 * 89.79476 * 4 3 2 9 9 O 1.21276 * 120.00290 * 5.00466 * 8 4 3 10 10 N 1.34778 * 119.99362 * 185.00001 * 8 4 3 11 11 C 1.46498 * 119.99434 * 180.02562 * 10 8 4 12 12 H 1.08996 * 109.47101 * 324.99828 * 11 10 8 13 13 C 1.52999 * 109.47392 * 85.00137 * 11 10 8 14 14 C 1.53005 * 109.47009 * 204.99855 * 11 10 8 15 15 C 1.53943 * 113.73094 * 65.09970 * 14 11 10 16 16 N 1.47960 * 86.30013 * 138.02309 * 15 14 11 17 17 C 1.46895 * 110.99942 * 222.47067 * 16 15 14 18 18 C 1.50702 * 109.46919 * 170.00382 * 17 16 15 19 19 O 1.21293 * 120.00344 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99605 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99680 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99664 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99985 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99945 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99901 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47273 * 90.00017 * 25 23 21 27 27 H 1.48503 * 109.46783 * 210.00235 * 25 23 21 28 28 H 1.48502 * 109.47198 * 330.00031 * 25 23 21 29 29 C 1.48186 * 90.67531 * 335.41066 * 16 15 14 30 30 H 1.08996 * 109.47508 * 59.99867 * 1 2 3 31 31 H 1.09006 * 109.46795 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47064 * 299.99663 * 1 2 3 33 33 H 1.09004 * 109.46908 * 240.00042 * 2 1 3 34 34 H 1.09005 * 109.47621 * 120.00122 * 2 1 3 35 35 H 1.08994 * 109.47090 * 184.47142 * 6 4 3 36 36 H 1.08997 * 109.47556 * 304.47877 * 6 4 3 37 37 H 1.09004 * 109.46846 * 62.85592 * 7 6 4 38 38 H 1.09002 * 109.47013 * 182.84959 * 7 6 4 39 39 H 1.08990 * 109.47423 * 302.85139 * 7 6 4 40 40 H 0.97001 * 120.00206 * 0.02562 * 10 8 4 41 41 H 1.09004 * 109.47085 * 63.88528 * 13 11 10 42 42 H 1.08995 * 109.47187 * 183.88650 * 13 11 10 43 43 H 1.08996 * 109.47183 * 303.88738 * 13 11 10 44 44 H 1.08999 * 112.94007 * 293.53464 * 14 11 10 45 45 H 1.08999 * 113.76004 * 252.39891 * 15 14 11 46 46 H 1.08999 * 113.75448 * 23.65314 * 15 14 11 47 47 H 1.09001 * 109.47285 * 289.99884 * 17 16 15 48 48 H 1.09003 * 109.47092 * 50.00441 * 17 16 15 49 49 H 0.96998 * 120.00443 * 359.97438 * 20 18 17 50 50 H 0.97000 * 119.99953 * 179.97438 * 24 23 21 51 51 H 1.09004 * 113.65429 * 270.26827 * 29 16 15 52 52 H 1.08996 * 113.92407 * 138.95491 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4272 1.4614 -0.1012 5 1 3.8953 0.5920 0.3604 6 6 3.8892 2.7310 0.6167 7 6 3.5869 2.6102 2.1117 8 6 3.8231 1.5332 -1.5536 9 8 2.9690 1.5824 -2.4133 10 7 5.1263 1.5429 -1.8970 11 6 5.5112 1.6133 -3.3088 12 1 4.7909 1.0584 -3.9098 13 6 5.5327 3.0753 -3.7593 14 6 6.9029 1.0036 -3.4890 15 6 6.9636 -0.5036 -3.1813 16 7 7.8212 -0.6166 -4.3817 17 6 7.4529 -1.7913 -5.1831 18 6 8.1699 -1.7407 -6.5076 19 8 8.9141 -0.8166 -6.7595 20 7 7.9834 -2.7218 -7.4127 21 6 8.6353 -2.6755 -8.6180 22 1 9.2986 -1.8530 -8.8418 23 6 8.4427 -3.6867 -9.5513 24 7 9.0680 -3.6425 -10.7064 25 14 7.2950 -5.1087 -9.1643 26 1 5.9204 -4.7719 -9.6139 27 1 7.7622 -6.3283 -9.8711 28 1 7.2901 -5.3565 -7.7001 29 6 7.2274 0.6193 -4.9438 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 4.9618 2.8602 0.4722 36 1 3.3611 3.5924 0.2078 37 1 4.1547 1.7795 2.5312 38 1 3.8697 3.5345 2.6154 39 1 2.5214 2.4303 2.2536 40 1 5.8094 1.5033 -1.2094 41 1 6.3015 3.6147 -3.2060 42 1 5.7514 3.1235 -4.8260 43 1 4.5606 3.5291 -3.5669 44 1 7.6869 1.5828 -3.0012 45 1 7.4779 -0.7413 -2.2502 46 1 6.0035 -1.0105 -3.2782 47 1 7.7379 -2.6985 -4.6502 48 1 6.3762 -1.7925 -5.3526 49 1 7.3880 -3.4607 -7.2115 50 1 8.9338 -4.3486 -11.3578 51 1 6.3448 0.4403 -5.5580 52 1 7.9510 1.2797 -5.4215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734111850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:38 Heat of formation + Delta-G solvation = -89.098326 kcal Electronic energy + Delta-G solvation = -30271.501929 eV Core-core repulsion = 26079.250166 eV Total energy + Delta-G solvation = -4192.251763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.76761 -39.92766 -38.20336 -37.73290 -35.42098 -34.40142 -33.93950 -31.77592 -31.50028 -31.20362 -29.64431 -27.48679 -25.96799 -25.87396 -24.03264 -23.26930 -22.59764 -21.73043 -20.68837 -19.76865 -19.37475 -18.37984 -17.79578 -17.54534 -16.38704 -15.99639 -15.79530 -15.61110 -15.50505 -15.02885 -14.78910 -14.56095 -14.51964 -14.29845 -14.01571 -13.64986 -13.39766 -13.03414 -12.93442 -12.79041 -12.74646 -12.57410 -12.47668 -12.35299 -12.22446 -12.17878 -11.96130 -11.74475 -11.59950 -11.54169 -11.22705 -11.18843 -10.97387 -10.89975 -10.65127 -10.60462 -10.57900 -9.98123 -9.57500 -9.52332 -9.35482 -8.75636 -8.36153 -8.18366 -6.31709 -3.83086 2.31773 2.70289 3.01887 3.06110 3.14333 3.28203 3.71864 3.89293 4.09566 4.20178 4.32732 4.39529 4.48159 4.51151 4.70835 4.71278 4.75287 4.86229 4.96747 5.02440 5.02740 5.13119 5.17171 5.22648 5.23741 5.32485 5.37469 5.42172 5.46615 5.53253 5.55363 5.58406 5.60366 5.61037 5.66478 5.76530 5.79535 5.81416 5.89604 5.98505 6.04904 6.19768 6.28412 6.50108 6.66968 7.08029 7.22486 7.57163 7.95896 8.13179 8.59051 8.94246 9.41580 9.81925 10.81388 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002113 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.129872 B =13245.757228 C =14320.883341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.354 6.354 4 C 0.075 3.925 5 H 0.085 0.915 6 C -0.115 4.115 7 C -0.150 4.150 8 C 0.488 3.512 9 O -0.523 6.523 10 N -0.722 5.722 11 C 0.150 3.850 12 H 0.087 0.913 13 C -0.161 4.161 14 C -0.128 4.128 15 C 0.004 3.996 16 N -0.453 5.453 17 C 0.007 3.993 18 C 0.453 3.547 19 O -0.560 6.560 20 N -0.591 5.591 21 C -0.304 4.304 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.032 3.968 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.399 0.601 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.054 0.946 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.068 0.932 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 8.767 27.350 31.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.272 6.272 4 C 0.014 3.986 5 H 0.103 0.897 6 C -0.153 4.153 7 C -0.207 4.207 8 C 0.273 3.727 9 O -0.398 6.398 10 N -0.375 5.375 11 C 0.045 3.955 12 H 0.105 0.895 13 C -0.219 4.219 14 C -0.148 4.148 15 C -0.125 4.125 16 N -0.175 5.175 17 C -0.125 4.125 18 C 0.238 3.762 19 O -0.442 6.442 20 N -0.231 5.231 21 C -0.433 4.433 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.195 1.195 29 C -0.097 4.097 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.233 0.767 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.123 0.877 45 H 0.105 0.895 46 H 0.084 0.916 47 H 0.109 0.891 48 H 0.072 0.928 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.069 9.400 26.389 30.912 hybrid contribution -1.202 -1.725 0.150 2.108 sum -14.271 7.675 26.539 31.095 Atomic orbital electron populations 1.21711 0.93394 1.02316 1.03237 1.22575 0.96086 0.83422 1.00003 1.87998 1.18654 1.26876 1.93669 1.22067 0.84126 1.00645 0.91796 0.89710 1.21579 1.01283 0.96194 0.96263 1.21728 1.02673 1.01894 0.94430 1.21430 0.82717 0.76458 0.92067 1.90730 1.49773 1.47920 1.51375 1.46128 1.07135 1.75405 1.08836 1.21055 0.95597 0.97117 0.81686 0.89479 1.22129 1.02160 0.95482 1.02163 1.23395 0.96161 0.96023 0.99206 1.23984 0.96700 0.95059 0.96735 1.68454 1.44113 1.01345 1.03556 1.22499 0.98240 0.96319 0.95423 1.19578 0.86494 0.84818 0.85289 1.90560 1.39813 1.35100 1.78718 1.42226 1.42768 1.22005 1.16109 1.19425 1.24186 1.10154 0.89518 0.86275 1.25041 0.97771 0.97952 0.95435 1.69623 1.41850 1.34120 1.06511 0.86676 0.81476 0.82775 0.78493 1.19644 1.20130 1.19526 1.23801 0.98848 0.93227 0.93800 0.91533 0.91056 0.91928 0.93105 0.93325 0.90088 0.90377 0.92689 0.92155 0.91697 0.76687 0.92300 0.91124 0.92238 0.87683 0.89459 0.91559 0.89080 0.92767 0.79747 0.91613 0.91361 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 2 C 0.06 0.45 6.43 37.16 0.24 0.69 16 3 O -0.35 -3.48 8.99 -55.09 -0.50 -3.97 16 4 C 0.08 0.58 2.52 -27.88 -0.07 0.51 16 5 H 0.09 0.46 7.83 -51.93 -0.41 0.05 16 6 C -0.12 -0.67 5.61 -26.73 -0.15 -0.82 16 7 C -0.15 -0.73 9.84 37.16 0.37 -0.36 16 8 C 0.49 4.97 7.08 -10.98 -0.08 4.89 16 9 O -0.52 -7.76 16.17 -14.30 -0.23 -7.99 16 10 N -0.72 -5.71 4.85 -53.80 -0.26 -5.97 16 11 C 0.15 1.46 2.29 -67.93 -0.16 1.31 16 12 H 0.09 1.06 7.48 -51.93 -0.39 0.67 16 13 C -0.16 -1.54 9.43 37.16 0.35 -1.19 16 14 C -0.13 -1.30 3.36 -89.67 -0.30 -1.60 16 15 C 0.00 0.05 7.40 -2.76 -0.02 0.03 16 16 N -0.45 -7.02 5.95 -238.77 -1.42 -8.44 16 17 C 0.01 0.12 5.31 -4.98 -0.03 0.10 16 18 C 0.45 10.38 7.59 -10.98 -0.08 10.29 16 19 O -0.56 -15.04 15.14 5.55 0.08 -14.95 16 20 N -0.59 -14.25 5.09 -10.96 -0.06 -14.31 16 21 C -0.30 -8.66 10.16 -14.93 -0.15 -8.82 16 22 H 0.12 3.87 7.39 -52.48 -0.39 3.49 16 23 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 24 N -0.88 -25.88 13.96 55.50 0.77 -25.10 16 25 Si 0.88 19.54 27.74 -169.99 -4.71 14.82 16 26 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 29 C 0.03 0.47 6.28 -2.64 -0.02 0.45 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 35 H 0.08 0.32 7.78 -51.93 -0.40 -0.09 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.06 0.38 7.73 -51.93 -0.40 -0.02 16 40 H 0.40 2.03 8.31 -40.82 -0.34 1.69 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.07 0.71 7.75 -51.93 -0.40 0.30 16 47 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 48 H 0.05 0.81 7.69 -51.93 -0.40 0.41 16 49 H 0.37 7.85 5.76 -40.82 -0.24 7.61 16 50 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.07 1.00 7.67 -51.93 -0.40 0.60 16 52 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 LS Contribution 423.49 15.07 6.38 6.38 Total: -1.00 -35.87 423.49 -9.02 -44.90 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -9.27 Total: 8.80 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 0.19 Total: 5.83 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.96 Total: -53.82 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.64 Total: -26.92 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.87 -9.02 -44.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734111850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.203 kcal (2) G-P(sol) polarization free energy of solvation -35.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds