Wall clock time and date at job start Wed Apr 1 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42895 * 109.47089 * 2 1 4 4 C 1.42907 * 114.00190 * 184.44738 * 3 2 1 5 5 H 1.09000 * 109.46668 * 329.79841 * 4 3 2 6 6 C 1.52994 * 109.47228 * 209.79386 * 4 3 2 7 7 C 1.53006 * 109.46843 * 64.47280 * 6 4 3 8 8 C 1.50707 * 109.46720 * 89.79476 * 4 3 2 9 9 O 1.21276 * 120.00290 * 5.00466 * 8 4 3 10 10 N 1.34778 * 119.99362 * 185.00001 * 8 4 3 11 11 C 1.46498 * 119.99434 * 180.02562 * 10 8 4 12 12 H 1.08996 * 109.47101 * 324.99828 * 11 10 8 13 13 C 1.52999 * 109.47392 * 85.00137 * 11 10 8 14 14 C 1.53005 * 109.47009 * 204.99855 * 11 10 8 15 15 C 1.53943 * 113.73094 * 65.09970 * 14 11 10 16 16 N 1.47960 * 86.30013 * 138.02309 * 15 14 11 17 17 C 1.46895 * 110.99942 * 222.47067 * 16 15 14 18 18 C 1.50702 * 109.46919 * 170.00382 * 17 16 15 19 19 O 1.21293 * 120.00344 * 359.97438 * 18 17 16 20 20 N 1.34784 * 119.99605 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99680 * 179.97438 * 20 18 17 22 22 H 1.08005 * 119.99664 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99985 * 180.02562 * 21 20 18 24 24 N 1.31417 * 119.99945 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 119.99901 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47273 * 90.00017 * 25 23 21 27 27 H 1.48503 * 109.46783 * 210.00235 * 25 23 21 28 28 H 1.48502 * 109.47198 * 330.00031 * 25 23 21 29 29 C 1.48186 * 90.67531 * 335.41066 * 16 15 14 30 30 H 1.08996 * 109.47508 * 59.99867 * 1 2 3 31 31 H 1.09006 * 109.46795 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47064 * 299.99663 * 1 2 3 33 33 H 1.09004 * 109.46908 * 240.00042 * 2 1 3 34 34 H 1.09005 * 109.47621 * 120.00122 * 2 1 3 35 35 H 1.08994 * 109.47090 * 184.47142 * 6 4 3 36 36 H 1.08997 * 109.47556 * 304.47877 * 6 4 3 37 37 H 1.09004 * 109.46846 * 62.85592 * 7 6 4 38 38 H 1.09002 * 109.47013 * 182.84959 * 7 6 4 39 39 H 1.08990 * 109.47423 * 302.85139 * 7 6 4 40 40 H 0.97001 * 120.00206 * 0.02562 * 10 8 4 41 41 H 1.09004 * 109.47085 * 63.88528 * 13 11 10 42 42 H 1.08995 * 109.47187 * 183.88650 * 13 11 10 43 43 H 1.08996 * 109.47183 * 303.88738 * 13 11 10 44 44 H 1.08999 * 112.94007 * 293.53464 * 14 11 10 45 45 H 1.08999 * 113.76004 * 252.39891 * 15 14 11 46 46 H 1.08999 * 113.75448 * 23.65314 * 15 14 11 47 47 H 1.09001 * 109.47285 * 289.99884 * 17 16 15 48 48 H 1.09003 * 109.47092 * 50.00441 * 17 16 15 49 49 H 0.96998 * 120.00443 * 359.97438 * 20 18 17 50 50 H 0.97000 * 119.99953 * 179.97438 * 24 23 21 51 51 H 1.09004 * 113.65429 * 270.26827 * 29 16 15 52 52 H 1.08996 * 113.92407 * 138.95491 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4272 1.4614 -0.1012 5 1 3.8953 0.5920 0.3604 6 6 3.8892 2.7310 0.6167 7 6 3.5869 2.6102 2.1117 8 6 3.8231 1.5332 -1.5536 9 8 2.9690 1.5824 -2.4133 10 7 5.1263 1.5429 -1.8970 11 6 5.5112 1.6133 -3.3088 12 1 4.7909 1.0584 -3.9098 13 6 5.5327 3.0753 -3.7593 14 6 6.9029 1.0036 -3.4890 15 6 6.9636 -0.5036 -3.1813 16 7 7.8212 -0.6166 -4.3817 17 6 7.4529 -1.7913 -5.1831 18 6 8.1699 -1.7407 -6.5076 19 8 8.9141 -0.8166 -6.7595 20 7 7.9834 -2.7218 -7.4127 21 6 8.6353 -2.6755 -8.6180 22 1 9.2986 -1.8530 -8.8418 23 6 8.4427 -3.6867 -9.5513 24 7 9.0680 -3.6425 -10.7064 25 14 7.2950 -5.1087 -9.1643 26 1 5.9204 -4.7719 -9.6139 27 1 7.7622 -6.3283 -9.8711 28 1 7.2901 -5.3565 -7.7001 29 6 7.2274 0.6193 -4.9438 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 4.9618 2.8602 0.4722 36 1 3.3611 3.5924 0.2078 37 1 4.1547 1.7795 2.5312 38 1 3.8697 3.5345 2.6154 39 1 2.5214 2.4303 2.2536 40 1 5.8094 1.5033 -1.2094 41 1 6.3015 3.6147 -3.2060 42 1 5.7514 3.1235 -4.8260 43 1 4.5606 3.5291 -3.5669 44 1 7.6869 1.5828 -3.0012 45 1 7.4779 -0.7413 -2.2502 46 1 6.0035 -1.0105 -3.2782 47 1 7.7379 -2.6985 -4.6502 48 1 6.3762 -1.7925 -5.3526 49 1 7.3880 -3.4607 -7.2115 50 1 8.9338 -4.3486 -11.3578 51 1 6.3448 0.4403 -5.5580 52 1 7.9510 1.2797 -5.4215 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734111850.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:37 Heat of formation + Delta-G solvation = -117.794732 kcal Electronic energy + Delta-G solvation = -30272.746298 eV Core-core repulsion = 26079.250166 eV Total energy + Delta-G solvation = -4193.496133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.69998 -40.92506 -39.74726 -38.63459 -36.38305 -35.94845 -34.91261 -33.79367 -32.50828 -31.74655 -30.79774 -28.08702 -27.49129 -26.93566 -25.49465 -23.89854 -23.25227 -22.58832 -21.46112 -21.27416 -20.67823 -20.24765 -18.57793 -18.22670 -17.84025 -17.14035 -16.86335 -16.67275 -16.46832 -16.32836 -15.97009 -15.55940 -15.33235 -15.11113 -15.08215 -14.85508 -14.72296 -14.45341 -14.15700 -13.89415 -13.66460 -13.48080 -13.36240 -13.28981 -13.11346 -12.99703 -12.95585 -12.83695 -12.60704 -12.44491 -12.26281 -12.01678 -11.99152 -11.93997 -11.83213 -11.67541 -11.60319 -11.51807 -11.35469 -10.44520 -10.27649 -10.25954 -10.16761 -9.68358 -8.43856 -6.04722 1.27234 1.32578 1.41559 1.56585 1.91747 1.99812 2.20141 2.64298 2.71260 3.10438 3.13194 3.38386 3.61707 3.73015 3.90682 3.95326 4.02536 4.12388 4.16788 4.20912 4.28210 4.31526 4.35851 4.37886 4.45457 4.46980 4.48079 4.49208 4.59343 4.74223 4.78389 4.80292 4.86282 4.87383 4.97026 5.02176 5.12486 5.17842 5.19833 5.25602 5.29419 5.37918 5.46180 5.49112 5.51150 5.88540 6.00186 6.09009 6.56357 6.59090 6.85081 7.26072 7.36186 7.92816 8.73720 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015585 B = 0.002113 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1796.129872 B =13245.757228 C =14320.883341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.051 3.949 3 O -0.378 6.378 4 C 0.076 3.924 5 H 0.116 0.884 6 C -0.112 4.112 7 C -0.146 4.146 8 C 0.487 3.513 9 O -0.577 6.577 10 N -0.703 5.703 11 C 0.158 3.842 12 H 0.062 0.938 13 C -0.158 4.158 14 C -0.101 4.101 15 C 0.016 3.984 16 N -0.480 5.480 17 C 0.019 3.981 18 C 0.450 3.550 19 O -0.608 6.608 20 N -0.593 5.593 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.016 4.016 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.259 1.259 27 H -0.273 1.273 28 H -0.232 1.232 29 C 0.020 3.980 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.050 0.950 40 H 0.418 0.582 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.124 0.876 45 H 0.115 0.885 46 H 0.075 0.925 47 H 0.120 0.880 48 H 0.080 0.920 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.058 0.942 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.735 6.939 31.430 35.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 O -0.296 6.296 4 C 0.015 3.985 5 H 0.133 0.867 6 C -0.150 4.150 7 C -0.204 4.204 8 C 0.274 3.726 9 O -0.456 6.456 10 N -0.358 5.358 11 C 0.053 3.947 12 H 0.080 0.920 13 C -0.216 4.216 14 C -0.120 4.120 15 C -0.112 4.112 16 N -0.203 5.203 17 C -0.112 4.112 18 C 0.238 3.762 19 O -0.491 6.491 20 N -0.235 5.235 21 C -0.457 4.457 22 H 0.074 0.926 23 C -0.214 4.214 24 N -0.574 5.574 25 Si 0.784 3.216 26 H -0.183 1.183 27 H -0.198 1.198 28 H -0.155 1.155 29 C -0.109 4.109 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.255 0.745 41 H 0.097 0.903 42 H 0.080 0.920 43 H 0.063 0.937 44 H 0.142 0.858 45 H 0.134 0.866 46 H 0.093 0.907 47 H 0.138 0.862 48 H 0.098 0.902 49 H 0.224 0.776 50 H 0.089 0.911 51 H 0.077 0.923 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.220 7.579 30.530 34.522 hybrid contribution -0.746 -1.013 -1.148 1.704 sum -14.965 6.566 29.382 33.621 Atomic orbital electron populations 1.21733 0.93189 1.03231 1.02456 1.22699 0.96447 0.82921 1.00424 1.87984 1.20086 1.27938 1.93578 1.22281 0.83456 1.02736 0.90044 0.86680 1.21624 1.02393 0.94435 0.96561 1.21703 1.02024 1.02944 0.93699 1.22010 0.82588 0.75197 0.92852 1.90713 1.51322 1.50520 1.53036 1.45918 1.07121 1.74275 1.08436 1.20800 0.94672 0.96736 0.82508 0.91979 1.22090 1.01943 0.95553 1.02031 1.23196 0.96570 0.96386 0.95828 1.24079 0.96560 0.94905 0.95702 1.68457 1.46014 1.00801 1.05045 1.22447 0.98596 0.98322 0.91877 1.20850 0.85301 0.83164 0.86890 1.90539 1.41761 1.36759 1.80082 1.42069 1.43123 1.23287 1.14992 1.18993 1.24982 1.09406 0.92298 0.92647 1.26119 0.99539 1.01279 0.94513 1.69803 1.43836 1.35719 1.08016 0.85376 0.78398 0.77262 0.80566 1.18315 1.19800 1.15511 1.23761 0.97712 0.93203 0.96232 0.93627 0.89324 0.91338 0.94582 0.90756 0.87674 0.92363 0.91098 0.91439 0.93115 0.74450 0.90306 0.91977 0.93707 0.85778 0.86635 0.90703 0.86247 0.90241 0.77594 0.91117 0.92338 0.91136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 10.28 71.98 0.74 -1.26 16 2 C 0.05 0.75 6.43 71.98 0.46 1.21 16 3 O -0.38 -6.98 8.99 -129.99 -1.17 -8.15 16 4 C 0.08 0.98 2.52 29.85 0.08 1.06 16 5 H 0.12 0.78 7.83 -2.39 -0.02 0.76 16 6 C -0.11 -1.01 5.61 30.59 0.17 -0.84 16 7 C -0.15 -1.01 9.84 71.98 0.71 -0.30 16 8 C 0.49 9.15 7.08 87.66 0.62 9.77 16 9 O -0.58 -17.21 16.17 15.97 0.26 -16.95 16 10 N -0.70 -9.22 4.85 -442.53 -2.15 -11.37 16 11 C 0.16 2.84 2.29 44.99 0.10 2.94 16 12 H 0.06 1.49 7.48 -2.39 -0.02 1.47 16 13 C -0.16 -2.90 9.43 71.98 0.68 -2.22 16 14 C -0.10 -1.79 3.36 -10.15 -0.03 -1.83 16 15 C 0.02 0.28 7.40 86.41 0.64 0.92 16 16 N -0.48 -13.94 5.95 -909.33 -5.41 -19.35 16 17 C 0.02 0.60 5.31 85.56 0.45 1.06 16 18 C 0.45 20.75 7.59 87.66 0.67 21.41 16 19 O -0.61 -34.05 15.14 -3.07 -0.05 -34.09 16 20 N -0.59 -28.55 5.09 -306.96 -1.56 -30.11 16 21 C -0.33 -19.47 10.16 84.04 0.85 -18.62 16 22 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 23 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 24 N -0.93 -56.82 13.96 21.66 0.30 -56.52 16 25 Si 0.96 39.36 27.74 68.60 1.90 41.26 16 26 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 27 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 28 H -0.23 -7.98 6.52 99.48 0.65 -7.33 16 29 C 0.02 0.58 6.28 86.36 0.54 1.13 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.04 0.62 8.12 -2.39 -0.02 0.60 16 34 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 35 H 0.10 0.41 7.78 -2.39 -0.02 0.40 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.05 0.51 7.73 -2.39 -0.02 0.49 16 40 H 0.42 2.42 8.31 -92.71 -0.77 1.65 16 41 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.27 7.75 -2.39 -0.02 1.25 16 47 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 48 H 0.08 2.12 7.69 -2.39 -0.02 2.10 16 49 H 0.39 15.56 5.76 -92.71 -0.53 15.02 16 50 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 51 H 0.06 1.75 7.67 -2.38 -0.02 1.73 16 52 H 0.07 2.37 8.10 -2.39 -0.02 2.35 16 Total: -1.00 -86.54 423.49 -1.18 -87.72 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.45 Total: 33.55 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: 7.15 Total: 14.01 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -8.82 Total: -117.35 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -0.96 Total: -59.20 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.90 Total: 41.26 kcal Total: -86.54 -1.18 -87.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734111850.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.072 kcal (2) G-P(sol) polarization free energy of solvation -86.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds