Wall clock time and date at job start Wed Apr 1 2020 01:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99978 * 2 1 4 4 H 1.08994 * 109.46687 * 30.00272 * 3 2 1 5 5 C 1.50701 * 109.47154 * 269.99935 * 3 2 1 6 6 O 1.21276 * 119.99893 * 355.00155 * 5 3 2 7 7 N 1.34777 * 119.99562 * 174.99942 * 5 3 2 8 8 C 1.46504 * 119.99834 * 180.02562 * 7 5 3 9 9 H 1.09003 * 112.84778 * 336.19721 * 8 7 5 10 10 C 1.53785 * 113.61347 * 107.50128 * 8 7 5 11 11 C 1.53778 * 87.07776 * 89.11669 * 10 8 7 12 12 H 1.09001 * 113.69576 * 270.86927 * 11 10 8 13 13 C 1.53000 * 113.61270 * 139.98025 * 11 10 8 14 14 N 1.46895 * 109.47239 * 87.50224 * 13 11 10 15 15 C 1.46905 * 111.00171 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00254 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99970 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99671 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99798 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00536 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00539 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00289 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00000 * 23 21 19 27 27 C 1.53779 * 113.61536 * 205.00171 * 8 7 5 28 28 C 1.53004 * 109.46658 * 150.00073 * 3 2 1 29 29 C 1.52997 * 109.47198 * 299.99863 * 28 3 2 30 30 C 1.53000 * 109.46966 * 60.00299 * 28 3 2 31 31 H 1.08996 * 109.47062 * 299.99951 * 1 2 3 32 32 H 1.09005 * 109.46881 * 59.99717 * 1 2 3 33 33 H 1.08995 * 109.46895 * 179.97438 * 1 2 3 34 34 H 0.97002 * 120.00109 * 0.02562 * 7 5 3 35 35 H 1.08999 * 113.61690 * 334.57042 * 10 8 7 36 36 H 1.08992 * 113.61318 * 203.66384 * 10 8 7 37 37 H 1.08993 * 109.47319 * 327.50177 * 13 11 10 38 38 H 1.09002 * 109.47089 * 207.50232 * 13 11 10 39 39 H 1.00900 * 111.00389 * 303.95792 * 14 13 11 40 40 H 1.08996 * 109.46646 * 60.00323 * 15 14 13 41 41 H 1.09000 * 109.46710 * 299.99944 * 15 14 13 42 42 H 0.97004 * 119.99528 * 0.02562 * 18 16 15 43 43 H 0.96996 * 120.00340 * 179.97438 * 22 21 19 44 44 H 1.08989 * 113.61573 * 156.33588 * 27 8 7 45 45 H 1.09004 * 113.68853 * 25.44285 * 27 8 7 46 46 H 1.09000 * 109.46682 * 180.02562 * 28 3 2 47 47 H 1.09000 * 109.47049 * 60.00536 * 29 28 3 48 48 H 1.08998 * 109.47345 * 180.02562 * 29 28 3 49 49 H 1.08994 * 109.47576 * 300.00676 * 29 28 3 50 50 H 1.09000 * 109.46888 * 60.00101 * 30 28 3 51 51 H 1.09006 * 109.46597 * 179.97438 * 30 28 3 52 52 H 1.09000 * 109.47319 * 299.99486 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 1.9792 1.0107 -2.3413 7 7 2.6589 3.0125 -1.6685 8 6 2.8571 3.4589 -3.0497 9 1 3.0187 2.6329 -3.7424 10 6 1.8007 4.4689 -3.5282 11 6 2.7228 5.5722 -2.9831 12 1 2.5396 5.8191 -1.9373 13 6 2.7963 6.8086 -3.8812 14 7 1.7130 7.7357 -3.5279 15 6 1.7527 8.9378 -4.3714 16 6 0.6295 9.8633 -3.9802 17 8 -0.1291 9.5524 -3.0862 18 7 0.4686 11.0369 -4.6229 19 6 -0.5535 11.8786 -4.2673 20 1 -1.2294 11.6014 -3.4719 21 6 -0.7197 13.0884 -4.9303 22 7 -1.6991 13.8955 -4.5892 23 14 0.4498 13.5683 -6.3056 24 1 1.5979 14.3207 -5.7391 25 1 0.9464 12.3435 -6.9829 26 1 -0.2652 14.4219 -7.2881 27 6 3.8886 4.5908 -3.1894 28 6 3.3590 1.2632 0.7213 29 6 3.1515 0.7973 2.1637 30 6 4.2927 0.2892 -0.0001 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.8475 3.6152 -0.9322 35 1 0.8513 4.3919 -2.9983 36 1 1.6811 4.4954 -4.6112 37 1 2.6913 6.5074 -4.9234 38 1 3.7577 7.3029 -3.7410 39 1 0.8142 7.2812 -3.5876 40 1 1.6406 8.6516 -5.4172 41 1 2.7068 9.4466 -4.2342 42 1 1.0755 11.2857 -5.3375 43 1 -1.8149 14.7402 -5.0517 44 1 4.3397 4.6507 -4.1797 45 1 4.6255 4.6132 -2.3865 46 1 3.8021 2.2590 0.7217 47 1 2.7082 -0.1985 2.1637 48 1 4.1123 0.7675 2.6777 49 1 2.4863 1.4911 2.6776 50 1 4.4405 0.6212 -1.0277 51 1 5.2537 0.2594 0.5136 52 1 3.8494 -0.7066 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734217056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:40 Heat of formation + Delta-G solvation = -101.515539 kcal Electronic energy + Delta-G solvation = -29558.193540 eV Core-core repulsion = 25365.403326 eV Total energy + Delta-G solvation = -4192.790214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.87249 -39.44672 -38.42234 -37.56915 -35.46598 -35.22748 -33.92811 -33.20409 -31.66860 -29.07007 -28.13568 -27.53499 -26.53417 -26.03413 -25.51524 -23.60245 -22.20819 -21.76307 -20.48698 -19.59048 -19.27406 -18.34103 -17.88372 -17.17444 -16.52194 -16.26097 -15.76160 -15.64542 -15.42861 -15.00252 -14.91144 -14.63877 -14.38691 -14.25721 -13.94463 -13.89518 -13.62011 -13.37686 -13.15533 -12.92051 -12.83173 -12.70619 -12.47382 -12.44651 -12.16005 -12.04038 -11.80348 -11.69228 -11.58615 -11.28729 -11.18410 -11.16400 -11.05674 -10.85693 -10.69148 -10.60359 -10.34499 -9.98567 -9.58919 -9.58376 -9.32717 -8.60132 -8.20415 -8.14328 -6.32142 -3.83595 2.26050 2.66406 3.01350 3.05888 3.14001 3.36211 3.73139 4.00932 4.09368 4.20428 4.21781 4.26848 4.40904 4.46224 4.60451 4.64617 4.70520 4.85351 4.90937 4.99814 5.05217 5.17136 5.20442 5.25677 5.30549 5.37019 5.38493 5.43008 5.44140 5.48515 5.51966 5.52475 5.60652 5.61327 5.65450 5.79324 5.82705 5.85468 5.91543 5.92722 5.97729 6.02709 6.33788 6.58932 7.10420 7.16569 7.56834 7.58700 7.90290 8.13504 8.58863 8.93934 9.41445 9.81846 10.80992 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.001648 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.587809 B =16982.967585 C =17433.054547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.076 3.924 4 H 0.087 0.913 5 C 0.495 3.505 6 O -0.524 6.524 7 N -0.710 5.710 8 C 0.120 3.880 9 H 0.100 0.900 10 C -0.151 4.151 11 C -0.106 4.106 12 H 0.100 0.900 13 C 0.068 3.932 14 N -0.669 5.669 15 C 0.048 3.952 16 C 0.450 3.550 17 O -0.565 6.565 18 N -0.591 5.591 19 C -0.305 4.305 20 H 0.119 0.881 21 C 0.041 3.959 22 N -0.881 5.881 23 Si 0.880 3.120 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.277 1.277 27 C -0.139 4.139 28 C -0.086 4.086 29 C -0.145 4.145 30 C -0.146 4.146 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.401 0.599 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.350 0.650 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.094 0.906 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.055 0.945 50 H 0.053 0.947 51 H 0.057 0.943 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.192 -25.917 7.258 30.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.014 3.986 4 H 0.105 0.895 5 C 0.281 3.719 6 O -0.398 6.398 7 N -0.363 5.363 8 C 0.014 3.986 9 H 0.119 0.881 10 C -0.189 4.189 11 C -0.124 4.124 12 H 0.118 0.882 13 C -0.061 4.061 14 N -0.301 5.301 15 C -0.085 4.085 16 C 0.235 3.765 17 O -0.447 6.447 18 N -0.230 5.230 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.521 5.521 23 Si 0.707 3.293 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.202 1.202 27 C -0.177 4.177 28 C -0.105 4.105 29 C -0.203 4.203 30 C -0.203 4.203 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.236 0.764 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.169 0.831 40 H 0.061 0.939 41 H 0.105 0.895 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.103 0.897 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.076 0.924 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.819 -26.381 7.683 30.757 hybrid contribution 0.314 0.955 -1.772 2.037 sum 14.133 -25.427 5.911 29.685 Atomic orbital electron populations 1.22887 0.80528 1.03302 1.00160 1.87975 1.20021 1.24622 1.94319 1.22157 0.97243 0.87126 0.92042 0.89520 1.21376 0.76749 0.81526 0.92289 1.90715 1.49368 1.53714 1.46046 1.45741 1.67977 1.14344 1.08274 1.21815 0.96735 0.96403 0.83604 0.88148 1.23527 0.98352 0.95519 1.01526 1.22625 0.95892 0.92914 1.00987 0.88178 1.21956 0.95875 0.92279 0.96016 1.60070 1.07462 1.06688 1.55872 1.21709 0.99507 0.92494 0.94827 1.19732 0.87750 0.83268 0.85717 1.90560 1.47007 1.75052 1.32082 1.42212 1.29400 1.17885 1.33539 1.19433 1.06916 0.97790 1.19257 0.86297 1.25045 0.97048 0.95955 0.98154 1.69621 1.30124 1.10852 1.41540 0.86660 0.81293 0.79085 0.82269 1.19591 1.19554 1.20185 1.23334 0.96571 0.94699 1.03138 1.21222 0.92558 1.00863 0.95851 1.21788 1.02003 1.02293 0.94173 1.21784 0.98556 1.00148 0.99813 0.93824 0.93633 0.89162 0.76408 0.90927 0.89280 0.95365 0.91005 0.83056 0.93861 0.89518 0.79691 0.91613 0.88733 0.90748 0.89663 0.91525 0.92119 0.92600 0.92801 0.92388 0.91414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.81 101.05 1.09 1.30 16 2 O -0.35 -3.34 8.54 -55.09 -0.47 -3.81 16 3 C 0.08 0.59 2.26 -27.88 -0.06 0.53 16 4 H 0.09 0.52 7.79 -51.93 -0.40 0.11 16 5 C 0.50 4.92 5.87 -10.99 -0.06 4.86 16 6 O -0.52 -7.40 16.11 -14.30 -0.23 -7.63 16 7 N -0.71 -5.52 5.22 -53.01 -0.28 -5.79 16 8 C 0.12 1.01 4.32 -67.11 -0.29 0.72 16 9 H 0.10 1.00 7.46 -51.93 -0.39 0.61 16 10 C -0.15 -1.38 7.43 -25.92 -0.19 -1.57 16 11 C -0.11 -0.93 3.78 -89.81 -0.34 -1.27 16 12 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 13 C 0.07 0.73 5.52 -3.83 -0.02 0.71 16 14 N -0.67 -10.01 6.12 -115.06 -0.70 -10.72 16 15 C 0.05 0.78 6.17 -4.97 -0.03 0.75 16 16 C 0.45 10.19 7.82 -10.98 -0.09 10.11 16 17 O -0.57 -15.18 15.78 5.55 0.09 -15.09 16 18 N -0.59 -14.07 5.09 -10.96 -0.06 -14.13 16 19 C -0.31 -8.65 10.16 -14.93 -0.15 -8.80 16 20 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.03 16 22 N -0.88 -25.73 13.96 55.50 0.77 -24.96 16 23 Si 0.88 19.31 27.74 -169.99 -4.72 14.60 16 24 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 25 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.14 -0.96 7.39 -25.92 -0.19 -1.15 16 28 C -0.09 -0.52 2.77 -90.62 -0.25 -0.77 16 29 C -0.15 -0.76 9.05 37.16 0.34 -0.43 16 30 C -0.15 -1.06 8.80 37.16 0.33 -0.73 16 31 H 0.04 0.25 8.08 -51.93 -0.42 -0.17 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.40 2.22 8.48 -40.82 -0.35 1.87 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 0.80 7.90 -51.93 -0.41 0.39 16 37 H 0.03 0.29 7.84 -51.93 -0.41 -0.12 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.35 5.54 8.43 -39.29 -0.33 5.21 16 40 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 41 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.09 0.60 8.10 -51.94 -0.42 0.18 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.09 0.38 7.92 -51.93 -0.41 -0.03 16 47 H 0.07 0.41 7.68 -51.93 -0.40 0.01 16 48 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 50 H 0.05 0.46 7.22 -51.93 -0.37 0.09 16 51 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 52 H 0.07 0.58 7.68 -51.93 -0.40 0.18 16 LS Contribution 422.55 15.07 6.37 6.37 Total: -1.00 -35.35 422.55 -8.40 -43.75 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: -9.15 Total: 12.14 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -0.02 Total: 5.27 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.26 Total: -55.60 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -0.61 Total: -26.52 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.72 Total: 14.60 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -35.35 -8.40 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734217056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.770 kcal (2) G-P(sol) polarization free energy of solvation -35.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds