Wall clock time and date at job start Wed Apr 1 2020 01:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42904 * 113.99978 * 2 1 4 4 H 1.08994 * 109.46687 * 30.00272 * 3 2 1 5 5 C 1.50701 * 109.47154 * 269.99935 * 3 2 1 6 6 O 1.21276 * 119.99893 * 355.00155 * 5 3 2 7 7 N 1.34777 * 119.99562 * 174.99942 * 5 3 2 8 8 C 1.46504 * 119.99834 * 180.02562 * 7 5 3 9 9 H 1.09003 * 112.84778 * 336.19721 * 8 7 5 10 10 C 1.53785 * 113.61347 * 107.50128 * 8 7 5 11 11 C 1.53778 * 87.07776 * 89.11669 * 10 8 7 12 12 H 1.09001 * 113.69576 * 270.86927 * 11 10 8 13 13 C 1.53000 * 113.61270 * 139.98025 * 11 10 8 14 14 N 1.46895 * 109.47239 * 87.50224 * 13 11 10 15 15 C 1.46905 * 111.00171 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46943 * 180.02562 * 15 14 13 17 17 O 1.21292 * 120.00254 * 0.02562 * 16 15 14 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99970 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99671 * 180.02562 * 19 18 16 22 22 N 1.31414 * 119.99798 * 180.02562 * 21 19 18 23 23 Si 1.86798 * 120.00536 * 359.97438 * 21 19 18 24 24 H 1.48493 * 109.47326 * 270.00539 * 23 21 19 25 25 H 1.48506 * 109.46545 * 30.00289 * 23 21 19 26 26 H 1.48498 * 109.47210 * 150.00000 * 23 21 19 27 27 C 1.53779 * 113.61536 * 205.00171 * 8 7 5 28 28 C 1.53004 * 109.46658 * 150.00073 * 3 2 1 29 29 C 1.52997 * 109.47198 * 299.99863 * 28 3 2 30 30 C 1.53000 * 109.46966 * 60.00299 * 28 3 2 31 31 H 1.08996 * 109.47062 * 299.99951 * 1 2 3 32 32 H 1.09005 * 109.46881 * 59.99717 * 1 2 3 33 33 H 1.08995 * 109.46895 * 179.97438 * 1 2 3 34 34 H 0.97002 * 120.00109 * 0.02562 * 7 5 3 35 35 H 1.08999 * 113.61690 * 334.57042 * 10 8 7 36 36 H 1.08992 * 113.61318 * 203.66384 * 10 8 7 37 37 H 1.08993 * 109.47319 * 327.50177 * 13 11 10 38 38 H 1.09002 * 109.47089 * 207.50232 * 13 11 10 39 39 H 1.00900 * 111.00389 * 303.95792 * 14 13 11 40 40 H 1.08996 * 109.46646 * 60.00323 * 15 14 13 41 41 H 1.09000 * 109.46710 * 299.99944 * 15 14 13 42 42 H 0.97004 * 119.99528 * 0.02562 * 18 16 15 43 43 H 0.96996 * 120.00340 * 179.97438 * 22 21 19 44 44 H 1.08989 * 113.61573 * 156.33588 * 27 8 7 45 45 H 1.09004 * 113.68853 * 25.44285 * 27 8 7 46 46 H 1.09000 * 109.46682 * 180.02562 * 28 3 2 47 47 H 1.09000 * 109.47049 * 60.00536 * 29 28 3 48 48 H 1.08998 * 109.47345 * 180.02562 * 29 28 3 49 49 H 1.08994 * 109.47576 * 300.00676 * 29 28 3 50 50 H 1.09000 * 109.46888 * 60.00101 * 30 28 3 51 51 H 1.09006 * 109.46597 * 179.97438 * 30 28 3 52 52 H 1.09000 * 109.47319 * 299.99486 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2146 1.7644 -1.4208 6 8 1.9792 1.0107 -2.3413 7 7 2.6589 3.0125 -1.6685 8 6 2.8571 3.4589 -3.0497 9 1 3.0187 2.6329 -3.7424 10 6 1.8007 4.4689 -3.5282 11 6 2.7228 5.5722 -2.9831 12 1 2.5396 5.8191 -1.9373 13 6 2.7963 6.8086 -3.8812 14 7 1.7130 7.7357 -3.5279 15 6 1.7527 8.9378 -4.3714 16 6 0.6295 9.8633 -3.9802 17 8 -0.1291 9.5524 -3.0862 18 7 0.4686 11.0369 -4.6229 19 6 -0.5535 11.8786 -4.2673 20 1 -1.2294 11.6014 -3.4719 21 6 -0.7197 13.0884 -4.9303 22 7 -1.6991 13.8955 -4.5892 23 14 0.4498 13.5683 -6.3056 24 1 1.5979 14.3207 -5.7391 25 1 0.9464 12.3435 -6.9829 26 1 -0.2652 14.4219 -7.2881 27 6 3.8886 4.5908 -3.1894 28 6 3.3590 1.2632 0.7213 29 6 3.1515 0.7973 2.1637 30 6 4.2927 0.2892 -0.0001 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 2.8475 3.6152 -0.9322 35 1 0.8513 4.3919 -2.9983 36 1 1.6811 4.4954 -4.6112 37 1 2.6913 6.5074 -4.9234 38 1 3.7577 7.3029 -3.7410 39 1 0.8142 7.2812 -3.5876 40 1 1.6406 8.6516 -5.4172 41 1 2.7068 9.4466 -4.2342 42 1 1.0755 11.2857 -5.3375 43 1 -1.8149 14.7402 -5.0517 44 1 4.3397 4.6507 -4.1797 45 1 4.6255 4.6132 -2.3865 46 1 3.8021 2.2590 0.7217 47 1 2.7082 -0.1985 2.1637 48 1 4.1123 0.7675 2.6777 49 1 2.4863 1.4911 2.6776 50 1 4.4405 0.6212 -1.0277 51 1 5.2537 0.2594 0.5136 52 1 3.8494 -0.7066 -0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734217056.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:39 Heat of formation + Delta-G solvation = -129.124772 kcal Electronic energy + Delta-G solvation = -29559.390766 eV Core-core repulsion = 25365.403326 eV Total energy + Delta-G solvation = -4193.987440 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59521 -40.38471 -39.98258 -38.33880 -36.55676 -35.97640 -35.76829 -34.05099 -33.73066 -30.08206 -28.92177 -28.04023 -27.46507 -26.84240 -26.61090 -25.05554 -23.04172 -22.44408 -21.31216 -21.07097 -20.41734 -20.00351 -18.58978 -17.85040 -17.80085 -17.21144 -17.02801 -16.67046 -16.44173 -16.15316 -15.82553 -15.62141 -15.47805 -15.09277 -15.01420 -14.91544 -14.64855 -14.53550 -14.19008 -14.09153 -13.97815 -13.65769 -13.40597 -13.34252 -13.14551 -12.94080 -12.86816 -12.61308 -12.56024 -12.41546 -12.13664 -11.98623 -11.83853 -11.77644 -11.68977 -11.53623 -11.51727 -11.42670 -11.07473 -10.43489 -10.31931 -10.25140 -10.05829 -9.29792 -8.41595 -6.02681 1.30237 1.35927 1.44767 1.50965 1.95497 2.01150 2.23025 2.74244 2.77929 3.14655 3.39463 3.56045 3.61510 3.71498 3.75948 3.85357 3.95364 3.98458 4.13950 4.17903 4.33415 4.42772 4.45522 4.49195 4.50244 4.53727 4.66041 4.69645 4.79714 4.80131 4.82081 4.84518 4.87651 4.91903 4.95676 5.02441 5.07592 5.14527 5.19910 5.30142 5.37886 5.47153 5.52535 5.64934 5.91253 5.98441 6.09291 6.41140 6.52304 6.59644 6.87743 7.19980 7.39518 7.96241 8.76039 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.001648 C = 0.001606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.587809 B =16982.967585 C =17433.054547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.373 6.373 3 C 0.074 3.926 4 H 0.108 0.892 5 C 0.493 3.507 6 O -0.573 6.573 7 N -0.698 5.698 8 C 0.117 3.883 9 H 0.083 0.917 10 C -0.153 4.153 11 C -0.100 4.100 12 H 0.094 0.906 13 C 0.070 3.930 14 N -0.687 5.687 15 C 0.061 3.939 16 C 0.447 3.553 17 O -0.616 6.616 18 N -0.591 5.591 19 C -0.330 4.330 20 H 0.054 0.946 21 C -0.016 4.016 22 N -0.934 5.934 23 Si 0.966 3.034 24 H -0.256 1.256 25 H -0.231 1.231 26 H -0.276 1.276 27 C -0.118 4.118 28 C -0.083 4.083 29 C -0.142 4.142 30 C -0.142 4.142 31 H 0.064 0.936 32 H 0.028 0.972 33 H 0.098 0.902 34 H 0.415 0.585 35 H 0.053 0.947 36 H 0.091 0.909 37 H 0.041 0.959 38 H 0.085 0.915 39 H 0.341 0.659 40 H 0.074 0.926 41 H 0.116 0.884 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.108 0.892 45 H 0.091 0.909 46 H 0.108 0.892 47 H 0.053 0.947 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.036 0.964 51 H 0.074 0.926 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.714 -25.796 6.251 31.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.290 6.290 3 C 0.013 3.987 4 H 0.125 0.875 5 C 0.279 3.721 6 O -0.452 6.452 7 N -0.351 5.351 8 C 0.011 3.989 9 H 0.101 0.899 10 C -0.192 4.192 11 C -0.119 4.119 12 H 0.112 0.888 13 C -0.058 4.058 14 N -0.319 5.319 15 C -0.071 4.071 16 C 0.235 3.765 17 O -0.500 6.500 18 N -0.233 5.233 19 C -0.459 4.459 20 H 0.073 0.927 21 C -0.215 4.215 22 N -0.575 5.575 23 Si 0.786 3.214 24 H -0.181 1.181 25 H -0.154 1.154 26 H -0.201 1.201 27 C -0.156 4.156 28 C -0.102 4.102 29 C -0.199 4.199 30 C -0.200 4.200 31 H 0.082 0.918 32 H 0.046 0.954 33 H 0.117 0.883 34 H 0.252 0.748 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.059 0.941 38 H 0.104 0.896 39 H 0.159 0.841 40 H 0.092 0.908 41 H 0.134 0.866 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.126 0.874 45 H 0.109 0.891 46 H 0.126 0.874 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.085 0.915 50 H 0.055 0.945 51 H 0.092 0.908 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.380 -26.259 6.695 32.194 hybrid contribution -0.880 0.857 -1.356 1.830 sum 16.500 -25.402 5.339 30.758 Atomic orbital electron populations 1.22980 0.79872 1.04017 1.00254 1.87953 1.20922 1.25825 1.94281 1.22361 0.98608 0.86917 0.90829 0.87472 1.21862 0.75824 0.81565 0.92801 1.90688 1.51724 1.55164 1.47618 1.45665 1.66871 1.13933 1.08642 1.21798 0.97404 0.96134 0.83567 0.89854 1.23542 0.97795 0.96306 1.01521 1.22550 0.96747 0.92326 1.00297 0.88755 1.22069 0.94770 0.91977 0.97027 1.60103 1.08164 1.07250 1.56367 1.21644 0.97326 0.91716 0.96421 1.21064 0.88237 0.83172 0.84041 1.90539 1.49232 1.76068 1.34165 1.42041 1.28845 1.17890 1.34499 1.19012 1.08117 0.99775 1.19002 0.92740 1.26141 0.99101 0.94960 1.01266 1.69806 1.32619 1.11611 1.43465 0.85344 0.78334 0.80091 0.77616 1.18060 1.15449 1.20080 1.23253 0.95823 0.92041 1.04528 1.21296 0.91262 1.01710 0.95906 1.21759 1.02765 1.01787 0.93587 1.21743 0.99602 0.99412 0.99218 0.91752 0.95370 0.88321 0.74832 0.92764 0.89097 0.94058 0.89624 0.84104 0.90830 0.86633 0.77440 0.91143 0.87404 0.89093 0.87411 0.92820 0.91038 0.91535 0.94510 0.90753 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.81 113.37 1.23 1.60 16 2 O -0.37 -7.10 8.54 -129.99 -1.11 -8.21 16 3 C 0.07 1.10 2.26 29.85 0.07 1.16 16 4 H 0.11 1.11 7.79 -2.39 -0.02 1.09 16 5 C 0.49 9.78 5.87 87.66 0.51 10.30 16 6 O -0.57 -16.89 16.11 15.97 0.26 -16.63 16 7 N -0.70 -10.14 5.22 -440.03 -2.30 -12.44 16 8 C 0.12 1.84 4.32 45.52 0.20 2.04 16 9 H 0.08 1.65 7.46 -2.39 -0.02 1.64 16 10 C -0.15 -2.67 7.43 31.12 0.23 -2.43 16 11 C -0.10 -1.54 3.78 -10.27 -0.04 -1.58 16 12 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 13 C 0.07 1.26 5.52 86.30 0.48 1.74 16 14 N -0.69 -19.08 6.12 -517.93 -3.17 -22.25 16 15 C 0.06 1.81 6.17 85.56 0.53 2.33 16 16 C 0.45 20.02 7.82 87.66 0.69 20.71 16 17 O -0.62 -34.10 15.78 -3.07 -0.05 -34.15 16 18 N -0.59 -27.70 5.09 -306.98 -1.56 -29.27 16 19 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 20 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 21 C -0.02 -0.89 5.50 84.93 0.47 -0.43 16 22 N -0.93 -56.30 13.96 21.66 0.30 -55.99 16 23 Si 0.97 38.45 27.74 68.60 1.90 40.35 16 24 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 25 H -0.23 -7.69 6.52 99.48 0.65 -7.04 16 26 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 27 C -0.12 -1.28 7.39 31.12 0.23 -1.05 16 28 C -0.08 -0.87 2.77 -10.79 -0.03 -0.90 16 29 C -0.14 -1.22 9.05 71.98 0.65 -0.57 16 30 C -0.14 -1.98 8.80 71.98 0.63 -1.34 16 31 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 32 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.41 3.75 8.48 -92.71 -0.79 2.96 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.09 1.54 7.90 -2.39 -0.02 1.52 16 37 H 0.04 0.67 7.84 -2.39 -0.02 0.65 16 38 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.34 10.51 8.43 -89.69 -0.76 9.75 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.39 15.01 5.76 -92.71 -0.53 14.47 16 43 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 44 H 0.11 0.96 8.10 -2.39 -0.02 0.94 16 45 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.11 0.65 7.92 -2.39 -0.02 0.63 16 47 H 0.05 0.61 7.68 -2.39 -0.02 0.59 16 48 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 50 H 0.04 0.63 7.22 -2.39 -0.02 0.61 16 51 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 52 H 0.05 0.85 7.68 -2.39 -0.02 0.84 16 Total: -1.00 -84.07 422.55 -0.24 -84.31 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: -1.21 Total: 41.18 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: 6.69 Total: 13.10 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -6.73 Total: -119.95 kcal Atomic # 8 Polarization: -58.09 SS G_CDS: -0.90 Total: -58.99 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -84.07 -0.24 -84.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734217056.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.817 kcal (2) G-P(sol) polarization free energy of solvation -84.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds