Wall clock time and date at job start Wed Apr 1 2020 00:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47325 * 2 1 4 4 H 1.09002 * 109.47199 * 55.00744 * 3 2 1 5 5 C 1.53004 * 109.47242 * 174.99803 * 3 2 1 6 6 O 1.42890 * 109.47594 * 295.00269 * 3 2 1 7 7 C 1.42901 * 114.00141 * 150.00028 * 6 3 2 8 8 C 1.50703 * 109.47193 * 180.02562 * 7 6 3 9 9 O 1.21280 * 120.00050 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99789 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47065 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.35246 * 307.14296 * 12 11 10 14 14 C 1.54597 * 110.31107 * 69.28110 * 12 11 10 15 15 C 1.54936 * 102.91999 * 140.87425 * 14 12 11 16 16 N 1.48542 * 103.23034 * 322.58734 * 15 14 12 17 17 C 1.46893 * 111.00222 * 159.72082 * 16 15 14 18 18 C 1.50708 * 109.47146 * 52.60642 * 17 16 15 19 19 O 1.21288 * 119.99815 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99719 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99349 * 180.02562 * 20 18 17 22 22 H 1.07991 * 120.00515 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99490 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48502 * 109.47194 * 300.00675 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00238 * 25 23 21 29 29 C 1.47906 * 105.81487 * 39.20545 * 16 15 14 30 30 H 1.09001 * 109.47516 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47046 * 299.99447 * 1 2 3 32 32 H 1.09005 * 109.47497 * 59.99397 * 1 2 3 33 33 H 1.09003 * 109.46679 * 239.99868 * 2 1 3 34 34 H 1.09003 * 109.47011 * 120.00785 * 2 1 3 35 35 H 1.09004 * 109.46749 * 60.00531 * 5 3 2 36 36 H 1.08998 * 109.47614 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47483 * 300.01027 * 5 3 2 38 38 H 1.08995 * 109.47065 * 60.00240 * 7 6 3 39 39 H 1.09004 * 109.47237 * 299.99767 * 7 6 3 40 40 H 0.96999 * 120.00709 * 0.02562 * 10 8 7 41 41 H 1.08995 * 109.46996 * 60.00602 * 11 10 8 42 42 H 1.09004 * 109.47311 * 300.00130 * 11 10 8 43 43 H 1.08998 * 110.72504 * 259.23418 * 14 12 11 44 44 H 1.09003 * 110.72153 * 22.51904 * 14 12 11 45 45 H 1.09001 * 110.66896 * 204.15732 * 15 14 12 46 46 H 1.08998 * 110.66946 * 81.02629 * 15 14 12 47 47 H 1.09002 * 109.47091 * 292.60813 * 17 16 15 48 48 H 1.09000 * 109.47343 * 172.60431 * 17 16 15 49 49 H 0.96996 * 120.00564 * 359.97438 * 20 18 17 50 50 H 0.97001 * 119.99781 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.91096 * 94.02703 * 29 16 15 52 52 H 1.08997 * 109.91366 * 215.31942 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4442 0.1258 6 8 1.6620 2.0814 -1.2209 7 6 1.4560 3.4903 -1.1000 8 6 1.0628 4.0573 -2.4398 9 8 0.9686 3.3268 -3.4034 10 7 0.8157 5.3760 -2.5672 11 6 0.4339 5.9272 -3.8698 12 6 0.2133 7.4357 -3.7404 13 1 -0.4872 7.6484 -2.9329 14 6 1.5582 8.1550 -3.4875 15 6 1.4261 9.4447 -4.3357 16 7 0.7020 8.9821 -5.5474 17 6 0.0653 10.1087 -6.2425 18 6 1.0893 11.1845 -6.4984 19 8 2.2364 11.0281 -6.1367 20 7 0.7301 12.3206 -7.1281 21 6 1.6618 13.2990 -7.3613 22 1 2.6833 13.1595 -7.0401 23 6 1.2915 14.4702 -8.0110 24 7 0.0485 14.6398 -8.4023 25 14 2.5608 15.8036 -8.3282 26 1 1.9173 16.9422 -9.0314 27 1 3.1203 16.2721 -7.0348 28 1 3.6539 15.2560 -9.1710 29 6 -0.3094 8.0152 -5.0679 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 3.9994 0.9052 -0.7161 36 1 3.9283 2.4718 0.1253 37 1 3.8532 0.9567 1.0571 38 1 2.3770 3.9643 -0.7607 39 1 0.6619 3.6808 -0.3781 40 1 0.8913 5.9603 -1.7967 41 1 -0.4868 5.4529 -4.2093 42 1 1.2282 5.7372 -4.5918 43 1 1.6729 8.3980 -2.4312 44 1 2.3925 7.5470 -3.8373 45 1 2.4094 9.8335 -4.6004 46 1 0.8442 10.1973 -3.8036 47 1 -0.7371 10.5107 -5.6239 48 1 -0.3452 9.7648 -7.1918 49 1 -0.1874 12.4458 -7.4169 50 1 -0.2099 15.4575 -8.8556 51 1 -1.2596 8.5231 -4.9029 52 1 -0.4344 7.2159 -5.7983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753122316.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:48:00 Heat of formation + Delta-G solvation = -121.987858 kcal Electronic energy + Delta-G solvation = -29169.514302 eV Core-core repulsion = 24975.836342 eV Total energy + Delta-G solvation = -4193.677960 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.18663 -39.32224 -38.51764 -37.60266 -35.10830 -34.18299 -33.92718 -32.11675 -31.24071 -30.35690 -29.56273 -28.32878 -26.88968 -24.86752 -24.08020 -23.77043 -21.48038 -21.33540 -20.78127 -20.14895 -19.24207 -17.88811 -17.58459 -17.42552 -16.44643 -16.43811 -15.83670 -15.48077 -15.21603 -14.90883 -14.71002 -14.50003 -14.27032 -14.09223 -13.97904 -13.76730 -13.68577 -13.40644 -13.25239 -13.05490 -12.55641 -12.46835 -12.26186 -12.05979 -12.02566 -11.78829 -11.67274 -11.55050 -11.42760 -11.28001 -11.15380 -10.99695 -10.94820 -10.74268 -10.57780 -10.41437 -10.23326 -10.05605 -9.98397 -9.49621 -9.29227 -8.37482 -8.02626 -7.90456 -6.43594 -3.84589 2.37930 2.49872 3.18614 3.24731 3.28900 3.58674 3.87705 4.07539 4.26548 4.28980 4.44072 4.51870 4.54910 4.61298 4.66423 4.68917 4.78650 4.81183 4.90125 5.07985 5.11573 5.19628 5.23050 5.23777 5.27769 5.41239 5.49173 5.50946 5.57257 5.61108 5.65719 5.70617 5.74615 5.78249 5.86088 5.89213 5.93630 5.98663 6.05954 6.17914 6.25620 6.32172 6.67379 6.70054 7.21822 7.24286 7.29953 7.53284 7.98303 8.03876 8.59578 9.15827 9.51708 10.03419 10.73946 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036694 B = 0.001459 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.887093 B =19190.281869 C =19671.882613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C 0.083 3.917 4 H 0.061 0.939 5 C -0.177 4.177 6 O -0.354 6.354 7 C 0.044 3.956 8 C 0.511 3.489 9 O -0.518 6.518 10 N -0.728 5.728 11 C 0.132 3.868 12 C -0.111 4.111 13 H 0.079 0.921 14 C -0.123 4.123 15 C 0.038 3.962 16 N -0.495 5.495 17 C 0.036 3.964 18 C 0.442 3.558 19 O -0.581 6.581 20 N -0.561 5.561 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.284 1.284 27 H -0.274 1.274 28 H -0.273 1.273 29 C 0.041 3.959 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.400 0.600 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.076 0.924 45 H 0.118 0.882 46 H 0.035 0.965 47 H 0.048 0.952 48 H 0.090 0.910 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.046 0.954 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.079 -22.614 19.648 30.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.079 0.921 5 C -0.235 4.235 6 O -0.272 6.272 7 C -0.036 4.036 8 C 0.296 3.704 9 O -0.392 6.392 10 N -0.381 5.381 11 C 0.009 3.991 12 C -0.130 4.130 13 H 0.097 0.903 14 C -0.161 4.161 15 C -0.089 4.089 16 N -0.219 5.219 17 C -0.095 4.095 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.197 5.197 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.178 4.178 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.210 1.210 27 H -0.199 1.199 28 H -0.199 1.199 29 C -0.088 4.088 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.234 0.766 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.053 0.947 47 H 0.066 0.934 48 H 0.108 0.892 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.065 0.935 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.146 -23.431 18.497 29.874 hybrid contribution -0.635 1.769 0.787 2.037 sum -1.781 -21.662 19.285 29.057 Atomic orbital electron populations 1.21745 0.95280 1.01778 1.02221 1.21626 0.96739 0.94583 1.02845 1.22243 0.94405 0.94236 0.86606 0.92060 1.22318 0.95951 1.02555 1.02667 1.88066 1.89385 1.17744 1.32039 1.22226 1.01470 0.84409 0.95510 1.20230 0.77634 0.82237 0.90276 1.90752 1.49899 1.58556 1.40034 1.45898 1.71271 1.08024 1.12956 1.21495 1.01048 0.92180 0.84358 1.22258 0.98557 0.93691 0.98489 0.90283 1.22697 0.96391 0.97445 0.99566 1.23477 1.02382 0.94483 0.88572 1.64617 1.22022 1.12505 1.22801 1.22101 0.95806 0.91666 0.99964 1.19711 0.89342 0.83776 0.84450 1.90432 1.20479 1.79885 1.55809 1.41845 1.12347 1.14669 1.50870 1.19658 0.93351 0.94898 1.35127 0.87930 1.25265 0.96972 0.98711 0.96892 1.69605 1.16653 1.28053 1.39912 0.85915 0.80011 0.79594 0.78680 1.20966 1.19931 1.19859 1.22895 0.94227 0.96717 0.94951 0.92648 0.93116 0.91755 0.90834 0.90659 0.91487 0.92391 0.91490 0.90350 0.90424 0.76614 0.91370 0.90562 0.91512 0.90559 0.86380 0.94684 0.93383 0.89191 0.77442 0.91792 0.93546 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.81 37.15 0.36 -0.61 16 2 C -0.12 -0.74 5.64 -26.74 -0.15 -0.89 16 3 C 0.08 0.55 2.72 -26.73 -0.07 0.47 16 4 H 0.06 0.31 7.79 -51.93 -0.40 -0.10 16 5 C -0.18 -1.02 9.53 37.16 0.35 -0.67 16 6 O -0.35 -3.48 9.06 -55.14 -0.50 -3.98 16 7 C 0.04 0.33 6.23 36.01 0.22 0.55 16 8 C 0.51 5.49 7.91 -10.99 -0.09 5.40 16 9 O -0.52 -8.14 16.50 -14.35 -0.24 -8.38 16 10 N -0.73 -6.14 5.43 -60.29 -0.33 -6.47 16 11 C 0.13 1.34 4.76 -4.04 -0.02 1.32 16 12 C -0.11 -1.10 3.03 -89.27 -0.27 -1.37 16 13 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 14 C -0.12 -1.41 6.41 -24.87 -0.16 -1.57 16 15 C 0.04 0.61 5.30 -1.89 -0.01 0.60 16 16 N -0.50 -8.16 5.26 -231.88 -1.22 -9.38 16 17 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 18 C 0.44 10.29 7.49 -10.98 -0.08 10.21 16 19 O -0.58 -15.21 13.09 5.55 0.07 -15.13 16 20 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 21 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 22 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 24 N -0.90 -24.34 13.05 55.50 0.72 -23.62 16 25 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C 0.04 0.50 6.36 -2.75 -0.02 0.49 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.53 7.82 -51.93 -0.41 0.13 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.32 7.87 -51.93 -0.41 -0.09 16 37 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 39 H 0.08 0.38 8.09 -51.93 -0.42 -0.04 16 40 H 0.40 2.19 8.41 -40.82 -0.34 1.85 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.93 7.99 -51.93 -0.42 0.51 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 0.93 7.76 -51.93 -0.40 0.53 16 45 H 0.12 2.33 5.97 -51.93 -0.31 2.02 16 46 H 0.03 0.57 8.02 -51.93 -0.42 0.15 16 47 H 0.05 0.78 7.81 -51.93 -0.41 0.37 16 48 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 49 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.05 0.53 7.57 -51.93 -0.39 0.14 16 52 H 0.08 0.95 7.68 -51.93 -0.40 0.56 16 LS Contribution 419.86 15.07 6.33 6.33 Total: -1.00 -34.07 419.86 -9.63 -43.70 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -9.19 Total: 8.60 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.19 Total: 6.62 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -0.88 Total: -53.62 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.66 Total: -27.50 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.07 -9.63 -43.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753122316.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.287 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds