Wall clock time and date at job start Wed Apr 1 2020 00:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52992 * 109.47325 * 2 1 4 4 H 1.09002 * 109.47199 * 55.00744 * 3 2 1 5 5 C 1.53004 * 109.47242 * 174.99803 * 3 2 1 6 6 O 1.42890 * 109.47594 * 295.00269 * 3 2 1 7 7 C 1.42901 * 114.00141 * 150.00028 * 6 3 2 8 8 C 1.50703 * 109.47193 * 180.02562 * 7 6 3 9 9 O 1.21280 * 120.00050 * 359.97438 * 8 7 6 10 10 N 1.34772 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.46508 * 119.99789 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47065 * 180.02562 * 11 10 8 13 13 H 1.08998 * 110.35246 * 307.14296 * 12 11 10 14 14 C 1.54597 * 110.31107 * 69.28110 * 12 11 10 15 15 C 1.54936 * 102.91999 * 140.87425 * 14 12 11 16 16 N 1.48542 * 103.23034 * 322.58734 * 15 14 12 17 17 C 1.46893 * 111.00222 * 159.72082 * 16 15 14 18 18 C 1.50708 * 109.47146 * 52.60642 * 17 16 15 19 19 O 1.21288 * 119.99815 * 359.97438 * 18 17 16 20 20 N 1.34774 * 119.99719 * 180.02562 * 18 17 16 21 21 C 1.37101 * 119.99349 * 180.02562 * 20 18 17 22 22 H 1.07991 * 120.00515 * 359.97438 * 21 20 18 23 23 C 1.38955 * 119.99490 * 179.97438 * 21 20 18 24 24 N 1.31413 * 120.00236 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48502 * 109.47194 * 300.00675 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00238 * 25 23 21 29 29 C 1.47906 * 105.81487 * 39.20545 * 16 15 14 30 30 H 1.09001 * 109.47516 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47046 * 299.99447 * 1 2 3 32 32 H 1.09005 * 109.47497 * 59.99397 * 1 2 3 33 33 H 1.09003 * 109.46679 * 239.99868 * 2 1 3 34 34 H 1.09003 * 109.47011 * 120.00785 * 2 1 3 35 35 H 1.09004 * 109.46749 * 60.00531 * 5 3 2 36 36 H 1.08998 * 109.47614 * 179.97438 * 5 3 2 37 37 H 1.09001 * 109.47483 * 300.01027 * 5 3 2 38 38 H 1.08995 * 109.47065 * 60.00240 * 7 6 3 39 39 H 1.09004 * 109.47237 * 299.99767 * 7 6 3 40 40 H 0.96999 * 120.00709 * 0.02562 * 10 8 7 41 41 H 1.08995 * 109.46996 * 60.00602 * 11 10 8 42 42 H 1.09004 * 109.47311 * 300.00130 * 11 10 8 43 43 H 1.08998 * 110.72504 * 259.23418 * 14 12 11 44 44 H 1.09003 * 110.72153 * 22.51904 * 14 12 11 45 45 H 1.09001 * 110.66896 * 204.15732 * 15 14 12 46 46 H 1.08998 * 110.66946 * 81.02629 * 15 14 12 47 47 H 1.09002 * 109.47091 * 292.60813 * 17 16 15 48 48 H 1.09000 * 109.47343 * 172.60431 * 17 16 15 49 49 H 0.96996 * 120.00564 * 359.97438 * 20 18 17 50 50 H 0.97001 * 119.99781 * 179.97438 * 24 23 21 51 51 H 1.09000 * 109.91096 * 94.02703 * 29 16 15 52 52 H 1.08997 * 109.91366 * 215.31942 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5648 1.4442 0.1258 6 8 1.6620 2.0814 -1.2209 7 6 1.4560 3.4903 -1.1000 8 6 1.0628 4.0573 -2.4398 9 8 0.9686 3.3268 -3.4034 10 7 0.8157 5.3760 -2.5672 11 6 0.4339 5.9272 -3.8698 12 6 0.2133 7.4357 -3.7404 13 1 -0.4872 7.6484 -2.9329 14 6 1.5582 8.1550 -3.4875 15 6 1.4261 9.4447 -4.3357 16 7 0.7020 8.9821 -5.5474 17 6 0.0653 10.1087 -6.2425 18 6 1.0893 11.1845 -6.4984 19 8 2.2364 11.0281 -6.1367 20 7 0.7301 12.3206 -7.1281 21 6 1.6618 13.2990 -7.3613 22 1 2.6833 13.1595 -7.0401 23 6 1.2915 14.4702 -8.0110 24 7 0.0485 14.6398 -8.4023 25 14 2.5608 15.8036 -8.3282 26 1 1.9173 16.9422 -9.0314 27 1 3.1203 16.2721 -7.0348 28 1 3.6539 15.2560 -9.1710 29 6 -0.3094 8.0152 -5.0679 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5140 0.8899 35 1 3.9994 0.9052 -0.7161 36 1 3.9283 2.4718 0.1253 37 1 3.8532 0.9567 1.0571 38 1 2.3770 3.9643 -0.7607 39 1 0.6619 3.6808 -0.3781 40 1 0.8913 5.9603 -1.7967 41 1 -0.4868 5.4529 -4.2093 42 1 1.2282 5.7372 -4.5918 43 1 1.6729 8.3980 -2.4312 44 1 2.3925 7.5470 -3.8373 45 1 2.4094 9.8335 -4.6004 46 1 0.8442 10.1973 -3.8036 47 1 -0.7371 10.5107 -5.6239 48 1 -0.3452 9.7648 -7.1918 49 1 -0.1874 12.4458 -7.4169 50 1 -0.2099 15.4575 -8.8556 51 1 -1.2596 8.5231 -4.9029 52 1 -0.4344 7.2159 -5.7983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753122316.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:59 Heat of formation + Delta-G solvation = -147.680840 kcal Electronic energy + Delta-G solvation = -29170.628433 eV Core-core repulsion = 24975.836342 eV Total energy + Delta-G solvation = -4194.792091 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.07921 -40.59446 -39.39644 -38.92626 -36.24917 -35.75598 -34.71396 -33.44503 -33.03590 -30.87699 -30.53469 -29.20205 -28.25702 -26.34598 -25.14363 -24.44739 -22.53659 -21.96366 -21.65393 -21.08524 -21.00901 -19.86707 -18.26104 -18.11906 -17.77501 -17.18367 -17.09469 -16.53203 -16.52361 -16.21856 -15.81985 -15.73049 -15.56459 -15.23885 -14.78625 -14.71354 -14.60583 -14.36650 -14.12816 -14.00073 -13.68462 -13.53707 -13.45076 -13.21435 -12.96554 -12.91812 -12.80780 -12.55711 -12.43466 -12.35910 -12.24603 -12.14820 -12.12956 -11.90956 -11.83313 -11.56491 -11.45699 -11.43762 -10.85719 -10.57446 -10.18200 -10.08787 -10.00272 -9.27522 -8.46896 -5.95676 1.39274 1.41522 1.52300 1.59006 1.84212 2.03853 2.28569 2.88660 3.03601 3.20136 3.35709 3.59059 3.72354 3.77978 3.89057 3.94924 4.07793 4.20825 4.23473 4.28955 4.32240 4.35312 4.41705 4.43979 4.44990 4.50966 4.61891 4.68351 4.70557 4.73500 4.79154 4.83732 4.91079 4.96110 5.06825 5.11518 5.11707 5.22750 5.28019 5.30712 5.33050 5.41429 5.42883 5.44390 5.88842 6.01340 6.15229 6.19778 6.58170 6.60392 7.12434 7.25238 7.55081 8.11081 8.70249 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036694 B = 0.001459 C = 0.001423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.887093 B =19190.281869 C =19671.882613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.078 3.922 4 H 0.084 0.916 5 C -0.176 4.176 6 O -0.390 6.390 7 C 0.045 3.955 8 C 0.507 3.493 9 O -0.578 6.578 10 N -0.711 5.711 11 C 0.139 3.861 12 C -0.093 4.093 13 H 0.110 0.890 14 C -0.111 4.111 15 C 0.036 3.964 16 N -0.519 5.519 17 C 0.048 3.952 18 C 0.438 3.562 19 O -0.614 6.614 20 N -0.572 5.572 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.273 1.273 29 C 0.038 3.962 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.048 0.952 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.418 0.582 41 H 0.067 0.933 42 H 0.050 0.950 43 H 0.097 0.903 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.031 0.969 47 H 0.071 0.929 48 H 0.105 0.895 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.064 0.936 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.975 -22.773 22.115 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.021 3.979 4 H 0.102 0.898 5 C -0.233 4.233 6 O -0.309 6.309 7 C -0.034 4.034 8 C 0.293 3.707 9 O -0.457 6.457 10 N -0.365 5.365 11 C 0.015 3.985 12 C -0.112 4.112 13 H 0.129 0.871 14 C -0.149 4.149 15 C -0.091 4.091 16 N -0.244 5.244 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.500 6.500 20 N -0.209 5.209 21 C -0.464 4.464 22 H 0.098 0.902 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.199 1.199 29 C -0.090 4.090 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.256 0.744 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.116 0.884 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.050 0.950 47 H 0.089 0.911 48 H 0.123 0.877 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.082 0.918 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.061 -23.572 21.003 31.639 hybrid contribution -0.343 1.767 0.035 1.800 sum -2.404 -21.805 21.038 30.395 Atomic orbital electron populations 1.21717 0.95493 1.01936 1.01630 1.21674 0.96553 0.94746 1.02973 1.22430 0.94898 0.94277 0.86255 0.89782 1.22314 0.95431 1.02733 1.02844 1.88037 1.89787 1.19025 1.34074 1.22365 1.03652 0.83592 0.93780 1.20933 0.76451 0.82332 0.90946 1.90727 1.52699 1.60052 1.42213 1.45736 1.70057 1.07748 1.12995 1.21298 1.00126 0.92364 0.84734 1.22155 0.98035 0.92818 0.98202 0.87140 1.22615 0.96966 0.94902 1.00389 1.23301 0.99948 0.96612 0.89257 1.64568 1.23800 1.12421 1.23565 1.21983 0.94329 0.90505 1.01517 1.20740 0.90045 0.84093 0.82565 1.90436 1.22465 1.80598 1.56541 1.41918 1.12131 1.15123 1.51757 1.19635 0.93142 0.96637 1.36998 0.90247 1.26029 0.98925 1.00149 0.96035 1.69668 1.17789 1.28749 1.39879 0.84994 0.77674 0.77114 0.78587 1.19492 1.19584 1.19868 1.22994 0.93908 0.95873 0.96222 0.92194 0.91691 0.94216 0.92713 0.88488 0.93285 0.92038 0.89637 0.87870 0.87207 0.74427 0.91449 0.93124 0.88410 0.91671 0.90863 0.95038 0.91119 0.87658 0.77049 0.91296 0.91791 0.89725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.81 71.98 0.71 -1.06 16 2 C -0.12 -1.37 5.64 30.59 0.17 -1.20 16 3 C 0.08 0.89 2.72 30.59 0.08 0.98 16 4 H 0.08 0.56 7.79 -2.39 -0.02 0.54 16 5 C -0.18 -1.74 9.53 71.98 0.69 -1.06 16 6 O -0.39 -7.32 9.06 -129.94 -1.18 -8.50 16 7 C 0.05 0.57 6.23 71.24 0.44 1.02 16 8 C 0.51 10.28 7.91 87.66 0.69 10.98 16 9 O -0.58 -18.52 16.50 16.01 0.26 -18.26 16 10 N -0.71 -10.37 5.43 -463.05 -2.51 -12.88 16 11 C 0.14 2.58 4.76 86.38 0.41 2.99 16 12 C -0.09 -1.59 3.03 -9.92 -0.03 -1.62 16 13 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 14 C -0.11 -2.33 6.41 31.80 0.20 -2.13 16 15 C 0.04 1.16 5.30 86.65 0.46 1.62 16 16 N -0.52 -16.74 5.26 -887.55 -4.67 -21.41 16 17 C 0.05 1.68 5.52 85.56 0.47 2.15 16 18 C 0.44 20.86 7.49 87.66 0.66 21.52 16 19 O -0.61 -33.44 13.09 -3.05 -0.04 -33.48 16 20 N -0.57 -29.42 5.29 -306.98 -1.62 -31.04 16 21 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 22 H 0.08 4.78 7.16 -2.92 -0.02 4.76 16 23 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 24 N -0.92 -49.60 13.05 21.66 0.28 -49.32 16 25 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 C 0.04 0.85 6.36 86.44 0.55 1.40 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.66 7.82 -2.38 -0.02 0.64 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.06 0.55 7.87 -2.39 -0.02 0.54 16 37 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.10 0.78 7.87 -2.39 -0.02 0.76 16 39 H 0.11 0.67 8.09 -2.38 -0.02 0.65 16 40 H 0.42 3.01 8.41 -92.71 -0.78 2.23 16 41 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.23 7.99 -2.38 -0.02 1.21 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.06 1.54 7.76 -2.39 -0.02 1.52 16 45 H 0.07 3.02 5.97 -2.39 -0.01 3.00 16 46 H 0.03 1.01 8.02 -2.39 -0.02 0.99 16 47 H 0.07 2.16 7.81 -2.39 -0.02 2.14 16 48 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 49 H 0.40 19.36 7.90 -92.71 -0.73 18.63 16 50 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 51 H 0.06 1.24 7.57 -2.39 -0.02 1.23 16 52 H 0.08 1.85 7.68 -2.39 -0.02 1.83 16 Total: -1.00 -78.57 419.86 -1.26 -79.82 By element: Atomic # 1 Polarization: 33.51 SS G_CDS: -0.60 Total: 32.92 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 6.79 Total: 17.27 kcal Atomic # 7 Polarization: -106.12 SS G_CDS: -8.52 Total: -114.64 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: -0.95 Total: -60.23 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -78.57 -1.26 -79.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753122316.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.857 kcal (2) G-P(sol) polarization free energy of solvation -78.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds