Wall clock time and date at job start Wed Apr 1 2020 00:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.08999 * 109.47510 * 57.02902 * 3 2 1 5 5 C 1.53002 * 109.47355 * 177.03561 * 3 2 1 6 6 N 1.46497 * 109.47186 * 174.99879 * 5 3 2 7 7 C 1.34783 * 119.99716 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00007 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99605 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.46898 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.52316 * 305.00297 * 10 9 7 12 12 C 1.53174 * 109.52374 * 184.87936 * 10 9 7 13 13 C 1.53188 * 109.03323 * 183.17988 * 12 10 9 14 14 C 1.53086 * 109.21599 * 56.88430 * 13 12 10 15 15 O 1.42902 * 109.41608 * 302.43073 * 14 13 12 16 16 C 1.42904 * 114.10272 * 61.15003 * 15 14 13 17 17 N 1.46907 * 109.46962 * 297.03011 * 3 2 1 18 18 C 1.46901 * 111.00021 * 294.48214 * 17 3 2 19 19 C 1.50699 * 109.47089 * 177.81849 * 18 17 3 20 20 O 1.21284 * 119.99935 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00007 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00243 * 179.97438 * 21 19 18 23 23 H 1.08007 * 119.99582 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00356 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99694 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00088 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47219 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47076 * 119.99909 * 26 24 22 29 29 H 1.48496 * 109.46983 * 239.99657 * 26 24 22 30 30 H 1.08996 * 109.47058 * 185.22560 * 1 2 3 31 31 H 1.08997 * 109.47094 * 305.22696 * 1 2 3 32 32 H 1.08999 * 109.46882 * 65.22573 * 1 2 3 33 33 H 1.09003 * 109.47715 * 239.99597 * 2 1 3 34 34 H 1.09009 * 109.47368 * 119.99340 * 2 1 3 35 35 H 1.09006 * 109.46639 * 294.99468 * 5 3 2 36 36 H 1.08998 * 109.47573 * 54.99197 * 5 3 2 37 37 H 0.96996 * 120.00115 * 359.97438 * 6 5 3 38 38 H 1.08992 * 109.47642 * 300.00400 * 9 7 6 39 39 H 1.09007 * 109.47056 * 60.00967 * 9 7 6 40 40 H 1.09004 * 109.54612 * 302.98429 * 12 10 9 41 41 H 1.09003 * 109.54605 * 63.24766 * 12 10 9 42 42 H 1.09003 * 109.46928 * 296.98026 * 13 12 10 43 43 H 1.09000 * 109.57554 * 176.85590 * 13 12 10 44 44 H 1.08991 * 109.48233 * 182.44033 * 14 13 12 45 45 H 1.09003 * 109.49215 * 62.41054 * 14 13 12 46 46 H 1.08995 * 109.47982 * 178.86290 * 16 15 14 47 47 H 1.09005 * 109.48360 * 58.83656 * 16 15 14 48 48 H 1.00900 * 111.00064 * 170.52405 * 17 3 2 49 49 H 1.09002 * 109.46669 * 297.81413 * 18 17 3 50 50 H 1.08999 * 109.47507 * 57.80934 * 18 17 3 51 51 H 0.97005 * 119.99533 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99702 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6338 1.9715 0.8621 5 6 3.5682 1.4432 0.0746 6 7 4.0623 2.8171 -0.0456 7 6 5.3870 3.0626 -0.0061 8 8 6.1699 2.1462 0.1284 9 6 5.8953 4.4758 -0.1303 10 6 7.4236 4.4765 -0.0555 11 1 7.7437 3.9788 0.8598 12 6 7.9356 5.9201 -0.0591 13 6 9.4674 5.9068 -0.0644 14 6 9.9602 5.1112 -1.2759 15 8 9.4228 3.7881 -1.2258 16 6 7.9953 3.7361 -1.2674 17 7 1.6097 2.1139 -1.2338 18 6 2.2440 1.5075 -2.4119 19 6 1.7389 2.1856 -3.6593 20 8 0.9298 3.0852 -3.5752 21 7 2.1854 1.7917 -4.8684 22 6 1.7255 2.4082 -6.0032 23 1 1.0050 3.2093 -5.9283 24 6 2.1863 2.0025 -7.2497 25 7 3.0633 1.0281 -7.3407 26 14 1.5591 2.8421 -8.7960 27 1 0.5849 3.8995 -8.4247 28 1 2.6996 3.4530 -9.5249 29 1 0.8938 1.8408 -9.6677 30 1 -0.3633 -1.0234 0.0936 31 1 -0.3633 0.5928 0.8394 32 1 -0.3633 0.4306 -0.9331 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.8854 1.0252 1.0300 36 1 3.9720 0.8394 -0.7381 37 1 3.4362 3.5500 -0.1535 38 1 5.5785 4.8933 -1.0859 39 1 5.4913 5.0800 0.6821 40 1 7.5733 6.4334 -0.9499 41 1 7.5775 6.4363 0.8317 42 1 9.8298 5.4386 0.8508 43 1 9.8413 6.9290 -0.1233 44 1 11.0489 5.0622 -1.2601 45 1 9.6317 5.6025 -2.1918 46 1 7.6686 2.6964 -1.2455 47 1 7.6407 4.2094 -2.1831 48 1 1.7983 3.1043 -1.1911 49 1 3.3252 1.6285 -2.3450 50 1 1.9989 0.4461 -2.4506 51 1 2.8323 1.0719 -4.9356 52 1 3.3847 0.7446 -8.2109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753494755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:45 Heat of formation + Delta-G solvation = -138.416048 kcal Electronic energy + Delta-G solvation = -30743.677817 eV Core-core repulsion = 26549.287478 eV Total energy + Delta-G solvation = -4194.390340 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.41259 -39.28470 -38.48906 -37.28588 -34.59617 -34.13052 -33.89094 -32.28336 -31.99101 -31.20442 -29.17617 -27.53608 -26.36575 -25.17336 -24.30054 -23.62129 -22.50661 -20.68425 -20.32505 -20.03024 -19.09183 -17.93220 -17.30367 -16.83668 -16.52164 -16.35683 -15.95719 -15.56822 -15.36449 -14.92568 -14.61926 -14.51836 -14.36254 -14.25932 -14.06967 -13.73649 -13.49277 -13.32326 -13.07797 -12.83873 -12.74750 -12.63201 -12.18510 -12.08003 -11.89425 -11.66690 -11.48984 -11.44619 -11.29316 -11.21371 -11.06742 -11.04009 -10.88186 -10.60238 -10.47632 -10.35981 -10.23862 -9.83657 -9.57986 -9.53578 -9.20612 -8.52155 -8.11893 -7.97825 -6.43008 -3.84128 2.51584 2.98617 3.14916 3.25722 3.32471 3.78692 3.88511 4.06727 4.29157 4.39926 4.47080 4.53625 4.62665 4.68770 4.77194 4.85367 4.96273 5.09895 5.16573 5.18444 5.23034 5.24599 5.27274 5.33437 5.35267 5.43673 5.50278 5.56318 5.58834 5.65386 5.72721 5.74545 5.77263 5.79120 5.89191 5.97365 6.05674 6.07037 6.10753 6.20642 6.28825 6.29531 6.53032 7.10903 7.10938 7.30306 7.52206 7.53744 8.04482 8.08735 8.59208 9.16304 9.52705 10.03681 10.74635 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007220 B = 0.003215 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.422135 B = 8707.295092 C =11714.673776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.113 4.113 3 C 0.077 3.923 4 H 0.088 0.912 5 C 0.079 3.921 6 N -0.729 5.729 7 C 0.513 3.487 8 O -0.536 6.536 9 C -0.138 4.138 10 C -0.105 4.105 11 H 0.087 0.913 12 C -0.119 4.119 13 C -0.155 4.155 14 C 0.056 3.944 15 O -0.379 6.379 16 C 0.060 3.940 17 N -0.652 5.652 18 C 0.044 3.956 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.023 3.977 25 N -0.900 5.900 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.281 1.281 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.399 0.601 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.112 0.888 47 H 0.046 0.954 48 H 0.344 0.656 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.959 5.502 17.536 20.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.152 4.152 3 C -0.034 4.034 4 H 0.106 0.894 5 C -0.046 4.046 6 N -0.382 5.382 7 C 0.299 3.701 8 O -0.412 6.412 9 C -0.178 4.178 10 C -0.124 4.124 11 H 0.105 0.895 12 C -0.157 4.157 13 C -0.192 4.192 14 C -0.021 4.021 15 O -0.298 6.298 16 C -0.017 4.017 17 N -0.284 5.284 18 C -0.089 4.089 19 C 0.226 3.774 20 O -0.469 6.469 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.541 5.541 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.207 1.207 30 H 0.065 0.935 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.234 0.766 38 H 0.116 0.884 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.130 0.870 47 H 0.065 0.935 48 H 0.164 0.836 49 H 0.065 0.935 50 H 0.107 0.893 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.588 4.828 17.455 19.636 hybrid contribution 0.550 0.867 -0.872 1.347 sum 8.138 5.695 16.582 19.329 Atomic orbital electron populations 1.21615 0.94603 1.00584 1.03080 1.21505 0.97355 0.94314 1.01996 1.21983 0.90383 0.97216 0.93858 0.89386 1.22196 0.96473 0.83254 1.02697 1.46016 1.07437 1.09788 1.74985 1.20678 0.82032 0.91539 0.75812 1.90691 1.55264 1.46584 1.48708 1.21715 0.96870 0.94331 1.04907 1.21535 0.92904 0.96481 1.01468 0.89504 1.21671 0.95520 0.95968 1.02529 1.22172 0.96157 1.00895 1.00001 1.22585 0.98828 0.84033 0.96696 1.87982 1.20641 1.26483 1.94655 1.22884 0.80292 1.03058 0.95433 1.60213 1.60894 1.07365 0.99944 1.21776 0.96570 1.00042 0.90488 1.19792 0.86181 0.87078 0.84319 1.90516 1.36749 1.33090 1.86522 1.41877 1.39741 1.33690 1.04653 1.19732 1.23433 1.16640 0.83113 0.87901 1.25265 0.96559 0.96711 0.99381 1.69622 1.30682 1.27969 1.25840 0.85817 0.78593 0.79094 0.80942 1.19224 1.20767 1.20722 0.93532 0.93215 0.91022 0.91461 0.91826 0.91207 0.90820 0.76628 0.88400 0.88492 0.91530 0.91349 0.91079 0.90916 0.89121 0.93252 0.86985 0.93545 0.83616 0.93537 0.89332 0.77512 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.71 37.16 0.36 -1.22 16 2 C -0.11 -1.19 5.28 -26.73 -0.14 -1.34 16 3 C 0.08 0.82 2.73 -67.71 -0.18 0.63 16 4 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 5 C 0.08 0.88 4.47 -4.04 -0.02 0.86 16 6 N -0.73 -7.61 5.31 -60.29 -0.32 -7.93 16 7 C 0.51 6.06 7.56 -10.98 -0.08 5.98 16 8 O -0.54 -8.23 13.98 5.56 0.08 -8.15 16 9 C -0.14 -1.23 5.18 -27.88 -0.14 -1.38 16 10 C -0.10 -1.05 2.03 -90.48 -0.18 -1.24 16 11 H 0.09 0.99 7.96 -51.93 -0.41 0.58 16 12 C -0.12 -0.95 5.32 -26.54 -0.14 -1.09 16 13 C -0.15 -1.23 6.13 -26.59 -0.16 -1.39 16 14 C 0.06 0.53 6.84 37.20 0.25 0.78 16 15 O -0.38 -4.99 10.77 -35.23 -0.38 -5.37 16 16 C 0.06 0.75 5.84 37.20 0.22 0.96 16 17 N -0.65 -9.18 5.38 -107.99 -0.58 -9.76 16 18 C 0.04 0.73 5.32 -4.98 -0.03 0.70 16 19 C 0.44 10.05 7.82 -10.99 -0.09 9.97 16 20 O -0.58 -15.25 15.83 5.55 0.09 -15.16 16 21 N -0.56 -14.08 5.29 -10.97 -0.06 -14.14 16 22 C -0.30 -8.27 9.68 -14.94 -0.14 -8.41 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 26 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 27 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 28 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.99 7.85 -51.93 -0.41 0.59 16 33 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.95 6.69 -51.93 -0.35 0.61 16 37 H 0.40 3.50 7.23 -40.82 -0.30 3.21 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.11 1.65 6.02 -51.93 -0.31 1.33 16 47 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.34 4.81 7.24 -39.29 -0.28 4.52 16 49 H 0.05 0.75 6.41 -51.93 -0.33 0.41 16 50 H 0.09 1.41 6.30 -51.93 -0.33 1.09 16 51 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 52 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 409.30 15.07 6.17 6.17 Total: -1.00 -32.87 409.30 -8.69 -41.56 By element: Atomic # 1 Polarization: 25.11 SS G_CDS: -8.80 Total: 16.31 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -0.58 Total: 4.32 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.23 Total: -55.58 kcal Atomic # 8 Polarization: -28.46 SS G_CDS: -0.21 Total: -28.68 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.87 -8.69 -41.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753494755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.856 kcal (2) G-P(sol) polarization free energy of solvation -32.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds