Wall clock time and date at job start Wed Apr 1 2020 00:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47104 * 2 1 4 4 H 1.08999 * 109.47510 * 57.02902 * 3 2 1 5 5 C 1.53002 * 109.47355 * 177.03561 * 3 2 1 6 6 N 1.46497 * 109.47186 * 174.99879 * 5 3 2 7 7 C 1.34783 * 119.99716 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00007 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99605 * 179.97438 * 7 6 5 10 10 C 1.53005 * 109.46898 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.52316 * 305.00297 * 10 9 7 12 12 C 1.53174 * 109.52374 * 184.87936 * 10 9 7 13 13 C 1.53188 * 109.03323 * 183.17988 * 12 10 9 14 14 C 1.53086 * 109.21599 * 56.88430 * 13 12 10 15 15 O 1.42902 * 109.41608 * 302.43073 * 14 13 12 16 16 C 1.42904 * 114.10272 * 61.15003 * 15 14 13 17 17 N 1.46907 * 109.46962 * 297.03011 * 3 2 1 18 18 C 1.46901 * 111.00021 * 294.48214 * 17 3 2 19 19 C 1.50699 * 109.47089 * 177.81849 * 18 17 3 20 20 O 1.21284 * 119.99935 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00007 * 180.02562 * 19 18 17 22 22 C 1.37091 * 120.00243 * 179.97438 * 21 19 18 23 23 H 1.08007 * 119.99582 * 359.97438 * 22 21 19 24 24 C 1.38947 * 120.00356 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99694 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00088 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47219 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47076 * 119.99909 * 26 24 22 29 29 H 1.48496 * 109.46983 * 239.99657 * 26 24 22 30 30 H 1.08996 * 109.47058 * 185.22560 * 1 2 3 31 31 H 1.08997 * 109.47094 * 305.22696 * 1 2 3 32 32 H 1.08999 * 109.46882 * 65.22573 * 1 2 3 33 33 H 1.09003 * 109.47715 * 239.99597 * 2 1 3 34 34 H 1.09009 * 109.47368 * 119.99340 * 2 1 3 35 35 H 1.09006 * 109.46639 * 294.99468 * 5 3 2 36 36 H 1.08998 * 109.47573 * 54.99197 * 5 3 2 37 37 H 0.96996 * 120.00115 * 359.97438 * 6 5 3 38 38 H 1.08992 * 109.47642 * 300.00400 * 9 7 6 39 39 H 1.09007 * 109.47056 * 60.00967 * 9 7 6 40 40 H 1.09004 * 109.54612 * 302.98429 * 12 10 9 41 41 H 1.09003 * 109.54605 * 63.24766 * 12 10 9 42 42 H 1.09003 * 109.46928 * 296.98026 * 13 12 10 43 43 H 1.09000 * 109.57554 * 176.85590 * 13 12 10 44 44 H 1.08991 * 109.48233 * 182.44033 * 14 13 12 45 45 H 1.09003 * 109.49215 * 62.41054 * 14 13 12 46 46 H 1.08995 * 109.47982 * 178.86290 * 16 15 14 47 47 H 1.09005 * 109.48360 * 58.83656 * 16 15 14 48 48 H 1.00900 * 111.00064 * 170.52405 * 17 3 2 49 49 H 1.09002 * 109.46669 * 297.81413 * 18 17 3 50 50 H 1.08999 * 109.47507 * 57.80934 * 18 17 3 51 51 H 0.97005 * 119.99533 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99702 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6338 1.9715 0.8621 5 6 3.5682 1.4432 0.0746 6 7 4.0623 2.8171 -0.0456 7 6 5.3870 3.0626 -0.0061 8 8 6.1699 2.1462 0.1284 9 6 5.8953 4.4758 -0.1303 10 6 7.4236 4.4765 -0.0555 11 1 7.7437 3.9788 0.8598 12 6 7.9356 5.9201 -0.0591 13 6 9.4674 5.9068 -0.0644 14 6 9.9602 5.1112 -1.2759 15 8 9.4228 3.7881 -1.2258 16 6 7.9953 3.7361 -1.2674 17 7 1.6097 2.1139 -1.2338 18 6 2.2440 1.5075 -2.4119 19 6 1.7389 2.1856 -3.6593 20 8 0.9298 3.0852 -3.5752 21 7 2.1854 1.7917 -4.8684 22 6 1.7255 2.4082 -6.0032 23 1 1.0050 3.2093 -5.9283 24 6 2.1863 2.0025 -7.2497 25 7 3.0633 1.0281 -7.3407 26 14 1.5591 2.8421 -8.7960 27 1 0.5849 3.8995 -8.4247 28 1 2.6996 3.4530 -9.5249 29 1 0.8938 1.8408 -9.6677 30 1 -0.3633 -1.0234 0.0936 31 1 -0.3633 0.5928 0.8394 32 1 -0.3633 0.4306 -0.9331 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.8854 1.0252 1.0300 36 1 3.9720 0.8394 -0.7381 37 1 3.4362 3.5500 -0.1535 38 1 5.5785 4.8933 -1.0859 39 1 5.4913 5.0800 0.6821 40 1 7.5733 6.4334 -0.9499 41 1 7.5775 6.4363 0.8317 42 1 9.8298 5.4386 0.8508 43 1 9.8413 6.9290 -0.1233 44 1 11.0489 5.0622 -1.2601 45 1 9.6317 5.6025 -2.1918 46 1 7.6686 2.6964 -1.2455 47 1 7.6407 4.2094 -2.1831 48 1 1.7983 3.1043 -1.1911 49 1 3.3252 1.6285 -2.3450 50 1 1.9989 0.4461 -2.4506 51 1 2.8323 1.0719 -4.9356 52 1 3.3847 0.7446 -8.2109 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753494755.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:42:44 Heat of formation + Delta-G solvation = -163.520789 kcal Electronic energy + Delta-G solvation = -30744.766441 eV Core-core repulsion = 26549.287478 eV Total energy + Delta-G solvation = -4195.478963 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33612 -40.41684 -39.84586 -38.59017 -35.96912 -35.41739 -35.01747 -33.35052 -33.01897 -32.99771 -30.15650 -28.65236 -27.64928 -26.04410 -25.98518 -24.51343 -23.29857 -21.80657 -21.30625 -20.98699 -20.51042 -19.85769 -18.42763 -18.05342 -17.38022 -17.26530 -17.03909 -16.86067 -16.56802 -16.25881 -15.88858 -15.84809 -15.45854 -15.32275 -15.20997 -15.05196 -14.62933 -14.43919 -14.06485 -13.85639 -13.71215 -13.56827 -13.52072 -13.45718 -13.11579 -12.89726 -12.82498 -12.57818 -12.39987 -12.27146 -12.14615 -12.11554 -11.97334 -11.81548 -11.76822 -11.54353 -11.49675 -11.28434 -10.78207 -10.41069 -10.34674 -10.13479 -10.01745 -9.36039 -8.46789 -5.95723 1.36104 1.41413 1.55590 1.60630 2.04675 2.13237 2.28703 2.92446 2.95405 3.20519 3.51543 3.62253 3.73204 3.75831 3.79143 3.99037 4.01732 4.05793 4.20443 4.24334 4.30650 4.34119 4.38842 4.45510 4.53158 4.57057 4.59166 4.65787 4.68651 4.71021 4.74136 4.83737 4.95098 4.95617 4.99449 5.06381 5.08645 5.19568 5.22206 5.35951 5.38608 5.40747 5.42303 5.58069 5.87076 6.07532 6.25468 6.39619 6.46692 6.58830 7.12342 7.20688 7.55899 8.10287 8.70840 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007220 B = 0.003215 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.422135 B = 8707.295092 C =11714.673776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C 0.087 3.913 4 H 0.112 0.888 5 C 0.085 3.915 6 N -0.722 5.722 7 C 0.507 3.493 8 O -0.576 6.576 9 C -0.132 4.132 10 C -0.099 4.099 11 H 0.070 0.930 12 C -0.116 4.116 13 C -0.152 4.152 14 C 0.046 3.954 15 O -0.408 6.408 16 C 0.059 3.941 17 N -0.659 5.659 18 C 0.064 3.936 19 C 0.441 3.559 20 O -0.617 6.617 21 N -0.576 5.576 22 C -0.330 4.330 23 H 0.081 0.919 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.992 3.008 27 H -0.270 1.270 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.052 0.948 37 H 0.409 0.591 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.089 0.911 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.053 0.947 46 H 0.082 0.918 47 H 0.046 0.954 48 H 0.346 0.654 49 H 0.056 0.944 50 H 0.098 0.902 51 H 0.393 0.607 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 6.835 18.701 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.023 4.023 4 H 0.130 0.870 5 C -0.041 4.041 6 N -0.375 5.375 7 C 0.295 3.705 8 O -0.456 6.456 9 C -0.171 4.171 10 C -0.118 4.118 11 H 0.088 0.912 12 C -0.153 4.153 13 C -0.189 4.189 14 C -0.030 4.030 15 O -0.328 6.328 16 C -0.018 4.018 17 N -0.291 5.291 18 C -0.068 4.068 19 C 0.229 3.771 20 O -0.504 6.504 21 N -0.213 5.213 22 C -0.460 4.460 23 H 0.099 0.901 24 C -0.214 4.214 25 N -0.563 5.563 26 Si 0.816 3.184 27 H -0.195 1.195 28 H -0.197 1.197 29 H -0.198 1.198 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.246 0.754 38 H 0.125 0.875 39 H 0.147 0.853 40 H 0.091 0.909 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.121 0.879 45 H 0.072 0.928 46 H 0.100 0.900 47 H 0.064 0.936 48 H 0.166 0.834 49 H 0.073 0.927 50 H 0.116 0.884 51 H 0.227 0.773 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.438 6.165 18.638 20.993 hybrid contribution 0.601 0.420 -1.174 1.384 sum 8.040 6.585 17.464 20.323 Atomic orbital electron populations 1.21565 0.94954 1.01148 1.01839 1.21542 0.96928 0.94178 1.02597 1.22033 0.90098 0.97392 0.92769 0.86965 1.22100 0.96390 0.83392 1.02241 1.45982 1.07357 1.09933 1.74244 1.21238 0.82007 0.92367 0.74907 1.90683 1.56275 1.48035 1.50631 1.21754 0.96012 0.92775 1.06594 1.21443 0.93609 0.97505 0.99222 0.91196 1.21687 0.95467 0.94342 1.03843 1.22164 0.96226 1.01753 0.98771 1.22842 0.99536 0.82805 0.97858 1.87927 1.20943 1.28975 1.94930 1.22793 0.80448 1.01743 0.96777 1.60198 1.61037 1.07644 1.00243 1.21517 0.96788 0.99829 0.88669 1.20803 0.84807 0.86191 0.85349 1.90485 1.38049 1.34554 1.87268 1.41971 1.40260 1.34007 1.05032 1.19701 1.24279 1.17249 0.84761 0.90080 1.26052 0.96425 0.97108 1.01807 1.69692 1.31169 1.28656 1.26825 0.84877 0.78194 0.78124 0.77207 1.19486 1.19711 1.19781 0.92616 0.92012 0.94133 0.92710 0.89426 0.90492 0.92922 0.75427 0.87520 0.85257 0.90860 0.89259 0.91566 0.88582 0.87937 0.92837 0.90012 0.93597 0.83445 0.92664 0.88358 0.77349 0.91405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.71 71.98 0.70 -2.15 16 2 C -0.11 -2.19 5.28 30.59 0.16 -2.03 16 3 C 0.09 1.68 2.73 44.91 0.12 1.80 16 4 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 5 C 0.08 1.75 4.47 86.38 0.39 2.14 16 6 N -0.72 -14.07 5.31 -463.06 -2.46 -16.53 16 7 C 0.51 11.65 7.56 87.66 0.66 12.31 16 8 O -0.58 -18.07 13.98 -3.02 -0.04 -18.11 16 9 C -0.13 -2.13 5.18 29.85 0.15 -1.98 16 10 C -0.10 -1.91 2.03 -10.70 -0.02 -1.93 16 11 H 0.07 1.60 7.96 -2.39 -0.02 1.58 16 12 C -0.12 -1.59 5.32 30.72 0.16 -1.43 16 13 C -0.15 -2.12 6.13 30.69 0.19 -1.93 16 14 C 0.05 0.84 6.84 72.01 0.49 1.33 16 15 O -0.41 -11.03 10.77 -148.98 -1.60 -12.64 16 16 C 0.06 1.52 5.84 72.01 0.42 1.94 16 17 N -0.66 -17.81 5.38 -495.56 -2.66 -20.47 16 18 C 0.06 2.13 5.32 85.56 0.46 2.59 16 19 C 0.44 20.40 7.82 87.66 0.69 21.09 16 20 O -0.62 -32.72 15.83 -3.04 -0.05 -32.77 16 21 N -0.58 -29.47 5.29 -306.99 -1.62 -31.09 16 22 C -0.33 -18.64 9.68 84.04 0.81 -17.83 16 23 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 24 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 25 N -0.92 -50.35 13.05 21.66 0.28 -50.06 16 26 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 27 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 30 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 1.09 7.85 -2.39 -0.02 1.07 16 33 H 0.05 1.20 6.36 -2.39 -0.02 1.18 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.05 1.34 6.69 -2.39 -0.02 1.32 16 37 H 0.41 6.34 7.23 -92.71 -0.67 5.67 16 38 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.08 2.58 6.02 -2.39 -0.01 2.57 16 47 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 48 H 0.35 9.20 7.24 -89.69 -0.65 8.55 16 49 H 0.06 1.76 6.41 -2.39 -0.02 1.75 16 50 H 0.10 3.11 6.30 -2.39 -0.02 3.10 16 51 H 0.39 19.57 7.90 -92.70 -0.73 18.84 16 52 H 0.28 14.14 8.31 -92.71 -0.77 13.37 16 Total: -1.00 -73.43 409.30 -1.39 -74.81 By element: Atomic # 1 Polarization: 49.44 SS G_CDS: -1.11 Total: 48.33 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 5.85 Total: 13.62 kcal Atomic # 7 Polarization: -111.69 SS G_CDS: -6.46 Total: -118.16 kcal Atomic # 8 Polarization: -61.82 SS G_CDS: -1.69 Total: -63.52 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -73.43 -1.39 -74.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753494755.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.707 kcal (2) G-P(sol) polarization free energy of solvation -73.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds