Wall clock time and date at job start Wed Apr 1 2020 00:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 H 1.08999 * 110.54334 * 52.37776 * 3 2 1 5 5 C 1.54814 * 110.48732 * 289.76465 * 3 2 1 6 6 C 1.54991 * 102.09505 * 220.44703 * 5 3 2 7 7 O 1.44379 * 103.48863 * 37.02065 * 6 5 3 8 8 C 1.43739 * 106.97839 * 319.93980 * 7 6 5 9 9 H 1.09000 * 109.88622 * 266.93997 * 8 7 6 10 10 C 1.50702 * 109.87823 * 145.93595 * 8 7 6 11 11 O 1.21283 * 120.00262 * 356.45948 * 10 8 7 12 12 N 1.34777 * 119.99928 * 176.17853 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.09006 * 109.46796 * 55.00369 * 14 13 12 16 16 C 1.52999 * 109.47131 * 295.00471 * 14 13 12 17 17 C 1.52999 * 109.47469 * 175.00230 * 14 13 12 18 18 N 1.46904 * 109.47168 * 185.00312 * 17 14 13 19 19 C 1.46899 * 110.99863 * 179.97438 * 18 17 14 20 20 C 1.50690 * 109.47146 * 179.97438 * 19 18 17 21 21 O 1.21294 * 120.00295 * 359.97438 * 20 19 18 22 22 N 1.34782 * 120.00181 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00000 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99921 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99991 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99601 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00209 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47007 * 90.00081 * 27 25 23 29 29 H 1.48501 * 109.47264 * 210.00403 * 27 25 23 30 30 H 1.48505 * 109.47187 * 330.00646 * 27 25 23 31 31 H 1.09000 * 109.46937 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47096 * 300.00045 * 1 2 3 33 33 H 1.08994 * 109.46741 * 60.00574 * 1 2 3 34 34 H 1.08994 * 109.47139 * 239.99399 * 2 1 3 35 35 H 1.09002 * 109.46626 * 119.99692 * 2 1 3 36 36 H 1.08998 * 110.91129 * 102.24484 * 5 3 2 37 37 H 1.09005 * 110.90416 * 338.64598 * 5 3 2 38 38 H 1.08996 * 110.61659 * 278.52556 * 6 5 3 39 39 H 1.08996 * 110.62396 * 155.52401 * 6 5 3 40 40 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 41 41 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 42 42 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 43 43 H 1.09003 * 109.47088 * 60.00110 * 16 14 13 44 44 H 1.09001 * 109.46729 * 179.97438 * 16 14 13 45 45 H 1.08998 * 109.46866 * 299.99628 * 16 14 13 46 46 H 1.09007 * 109.46969 * 304.99985 * 17 14 13 47 47 H 1.08996 * 109.46836 * 65.00096 * 17 14 13 48 48 H 1.00904 * 110.99672 * 56.04754 * 18 17 14 49 49 H 1.09005 * 109.47218 * 299.99898 * 19 18 17 50 50 H 1.09001 * 109.46872 * 59.99845 * 19 18 17 51 51 H 0.96992 * 120.00129 * 359.97438 * 22 20 19 52 52 H 0.97005 * 119.99231 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0108 0.8084 5 6 1.7583 2.1168 -1.3648 6 6 3.0603 2.9230 -1.6037 7 8 4.0920 2.0592 -1.0801 8 6 3.5756 1.4717 0.1258 9 1 3.8678 2.0738 0.9862 10 6 4.1039 0.0687 0.2793 11 8 4.7989 -0.4159 -0.5885 12 7 3.8088 -0.6454 1.3835 13 6 4.3273 -2.0071 1.5355 14 6 3.8478 -2.5899 2.8664 15 1 2.7606 -2.5306 2.9183 16 6 4.4579 -1.7932 4.0214 17 6 4.2842 -4.0528 2.9694 18 7 3.7228 -4.6464 4.1903 19 6 4.1213 -6.0542 4.3224 20 6 3.5286 -6.6277 5.5835 21 8 2.8421 -5.9322 6.3019 22 7 3.7621 -7.9134 5.9138 23 6 3.2233 -8.4351 7.0615 24 1 2.6113 -7.8159 7.7007 25 6 3.4636 -9.7607 7.4017 26 7 4.2078 -10.5142 6.6236 27 14 2.7301 -10.4713 8.9657 28 1 1.3949 -11.0492 8.6681 29 1 3.6232 -11.5342 9.4929 30 1 2.5889 -9.3954 9.9795 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.8961 2.7806 -1.3001 37 1 1.6146 1.3697 -2.1454 38 1 3.0342 3.8651 -1.0563 39 1 3.2120 3.1005 -2.6683 40 1 3.2530 -0.2579 2.0776 41 1 3.9648 -2.6275 0.7159 42 1 5.4170 -1.9848 1.5197 43 1 4.1469 -0.7511 3.9480 44 1 4.1159 -2.2082 4.9695 45 1 5.5450 -1.8526 3.9694 46 1 3.9235 -4.6017 2.0994 47 1 5.3723 -4.1055 3.0068 48 1 2.7184 -4.5520 4.2094 49 1 3.7592 -6.6166 3.4618 50 1 5.2083 -6.1212 4.3690 51 1 4.3114 -8.4696 5.3395 52 1 4.3752 -11.4397 6.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:00 Heat of formation + Delta-G solvation = -126.339526 kcal Electronic energy + Delta-G solvation = -29720.898962 eV Core-core repulsion = 25527.032299 eV Total energy + Delta-G solvation = -4193.866663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.11456 -38.96008 -38.33179 -37.13024 -35.51862 -34.66298 -33.84967 -32.39838 -31.20547 -30.81092 -29.88997 -27.41638 -26.71200 -24.95030 -24.19795 -23.39276 -22.80409 -21.56099 -20.84458 -20.04364 -19.17156 -17.89878 -17.49203 -17.23792 -16.69594 -16.06685 -15.92697 -15.59141 -15.37819 -15.17330 -14.92095 -14.65470 -14.37743 -14.29378 -13.94543 -13.78808 -13.65837 -13.40909 -13.29092 -12.99133 -12.67263 -12.52269 -12.40050 -12.09617 -11.96131 -11.76472 -11.68071 -11.61090 -11.52536 -11.22130 -11.17390 -11.08260 -11.06637 -10.97587 -10.89674 -10.48225 -10.40009 -10.22414 -9.77852 -9.51544 -9.22855 -8.47231 -8.06707 -7.96437 -6.42258 -3.83166 2.31479 2.59173 3.17263 3.26015 3.31918 3.54981 3.85979 3.90339 4.07057 4.10641 4.22283 4.29568 4.47991 4.65659 4.66929 4.70777 4.77988 4.86431 4.90259 4.93915 4.95946 5.12238 5.16136 5.22718 5.25350 5.31030 5.32093 5.36507 5.45474 5.53477 5.58165 5.64052 5.66477 5.69085 5.74458 5.84564 5.86018 5.87456 5.97990 6.03903 6.18243 6.26285 6.30822 6.37958 7.16078 7.18496 7.54557 7.63611 7.93066 8.05697 8.60633 9.17229 9.53841 10.05126 10.75440 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.001585 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.528044 B =17662.648575 C =18088.332550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.149 4.149 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.061 3.939 9 H 0.094 0.906 10 C 0.518 3.482 11 O -0.520 6.520 12 N -0.725 5.725 13 C 0.124 3.876 14 C -0.099 4.099 15 H 0.077 0.923 16 C -0.140 4.140 17 C 0.066 3.934 18 N -0.665 5.665 19 C 0.051 3.949 20 C 0.441 3.559 21 O -0.584 6.584 22 N -0.564 5.564 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.402 0.598 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.043 0.957 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.029 0.971 47 H 0.075 0.925 48 H 0.348 0.652 49 H 0.043 0.957 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.223 25.035 -15.938 29.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.175 4.175 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.265 6.265 8 C -0.001 4.001 9 H 0.112 0.888 10 C 0.303 3.697 11 O -0.394 6.394 12 N -0.381 5.381 13 C 0.000 4.000 14 C -0.118 4.118 15 H 0.095 0.905 16 C -0.198 4.198 17 C -0.065 4.065 18 N -0.298 5.298 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.204 1.204 29 H -0.209 1.209 30 H -0.194 1.194 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.238 0.762 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.047 0.953 47 H 0.093 0.907 48 H 0.167 0.833 49 H 0.061 0.939 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.379 25.126 -15.753 29.848 hybrid contribution -0.954 -1.009 0.117 1.394 sum -4.333 24.117 -15.636 29.067 Atomic orbital electron populations 1.21756 0.95011 1.02135 1.01813 1.22079 0.96858 0.94696 1.03915 1.22589 0.92944 0.98437 0.99224 0.88728 1.23245 0.98604 0.99921 0.96858 1.23648 0.86238 0.93190 1.00255 1.89017 1.37690 1.61084 1.38692 1.22745 0.93862 0.92685 0.90767 0.88828 1.20289 0.80302 0.87146 0.81944 1.90737 1.36751 1.71141 1.40764 1.46151 1.53954 1.16356 1.21640 1.21412 0.99482 0.81688 0.97381 1.21341 1.01024 0.95519 0.93936 0.90509 1.21764 1.00802 0.98077 0.99139 1.21898 1.00575 0.92838 0.91149 1.60049 1.17202 1.15814 1.36705 1.21667 1.01181 0.88552 0.96811 1.19807 0.86133 0.83104 0.88326 1.90516 1.42880 1.59598 1.53847 1.41869 1.45942 1.09303 1.22921 1.19705 1.28531 0.94847 0.99877 0.87921 1.25266 0.97134 0.96185 0.99368 1.69618 1.38163 1.08331 1.38154 0.85852 0.78522 0.78612 0.81262 1.20443 1.20918 1.19411 0.92340 0.92514 0.92754 0.91392 0.89836 0.89734 0.90015 0.91784 0.88483 0.76221 0.91373 0.91101 0.93753 0.90384 0.92726 0.95262 0.90702 0.83281 0.93876 0.89578 0.77450 0.91871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.79 37.16 0.36 -0.45 16 2 C -0.14 -0.89 4.15 -26.73 -0.11 -1.00 16 3 C -0.11 -0.63 3.04 -89.09 -0.27 -0.90 16 4 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 5 C -0.15 -0.77 6.03 -24.72 -0.15 -0.92 16 6 C 0.04 0.27 7.72 38.21 0.29 0.56 16 7 O -0.35 -3.61 10.74 -54.80 -0.59 -4.20 16 8 C 0.06 0.49 3.84 -27.31 -0.10 0.38 16 9 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 10 C 0.52 5.44 5.65 -10.98 -0.06 5.37 16 11 O -0.52 -7.94 16.53 -14.01 -0.23 -8.17 16 12 N -0.73 -5.75 3.50 -60.29 -0.21 -5.96 16 13 C 0.12 1.12 5.06 -4.04 -0.02 1.10 16 14 C -0.10 -0.90 2.57 -90.62 -0.23 -1.13 16 15 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 16 C -0.14 -1.34 8.95 37.16 0.33 -1.01 16 17 C 0.07 0.74 5.07 -3.82 -0.02 0.72 16 18 N -0.67 -10.06 5.58 -115.06 -0.64 -10.70 16 19 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 20 C 0.44 10.28 7.82 -10.99 -0.09 10.19 16 21 O -0.58 -15.62 15.78 5.55 0.09 -15.53 16 22 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 23 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 24 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 27 Si 0.93 20.97 29.55 -169.99 -5.02 15.95 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 30 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.27 7.62 -51.93 -0.40 -0.12 16 34 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 35 H 0.08 0.52 4.89 -51.93 -0.25 0.27 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.50 7.77 -51.93 -0.40 0.10 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.40 2.22 6.76 -40.82 -0.28 1.95 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.04 0.34 7.18 -51.93 -0.37 -0.04 16 44 H 0.08 0.93 7.75 -51.93 -0.40 0.53 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 48 H 0.35 5.41 8.43 -39.29 -0.33 5.08 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 50 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 51 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 52 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 415.98 15.07 6.27 6.27 Total: -1.00 -34.50 415.98 -9.02 -43.52 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -9.01 Total: 11.11 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -0.34 Total: 5.77 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: -0.19 Total: -54.70 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.73 Total: -27.91 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.50 -9.02 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.821 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds