Wall clock time and date at job start Wed Apr 1 2020 00:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.46944 * 2 1 4 4 H 1.08999 * 110.54334 * 52.37776 * 3 2 1 5 5 C 1.54814 * 110.48732 * 289.76465 * 3 2 1 6 6 C 1.54991 * 102.09505 * 220.44703 * 5 3 2 7 7 O 1.44379 * 103.48863 * 37.02065 * 6 5 3 8 8 C 1.43739 * 106.97839 * 319.93980 * 7 6 5 9 9 H 1.09000 * 109.88622 * 266.93997 * 8 7 6 10 10 C 1.50702 * 109.87823 * 145.93595 * 8 7 6 11 11 O 1.21283 * 120.00262 * 356.45948 * 10 8 7 12 12 N 1.34777 * 119.99928 * 176.17853 * 10 8 7 13 13 C 1.46499 * 120.00199 * 180.27479 * 12 10 8 14 14 C 1.52997 * 109.47555 * 180.02562 * 13 12 10 15 15 H 1.09006 * 109.46796 * 55.00369 * 14 13 12 16 16 C 1.52999 * 109.47131 * 295.00471 * 14 13 12 17 17 C 1.52999 * 109.47469 * 175.00230 * 14 13 12 18 18 N 1.46904 * 109.47168 * 185.00312 * 17 14 13 19 19 C 1.46899 * 110.99863 * 179.97438 * 18 17 14 20 20 C 1.50690 * 109.47146 * 179.97438 * 19 18 17 21 21 O 1.21294 * 120.00295 * 359.97438 * 20 19 18 22 22 N 1.34782 * 120.00181 * 180.02562 * 20 19 18 23 23 C 1.37101 * 120.00000 * 179.97438 * 22 20 19 24 24 H 1.08005 * 119.99921 * 0.02562 * 23 22 20 25 25 C 1.38949 * 119.99991 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99601 * 0.02562 * 25 23 22 27 27 Si 1.86793 * 120.00209 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47007 * 90.00081 * 27 25 23 29 29 H 1.48501 * 109.47264 * 210.00403 * 27 25 23 30 30 H 1.48505 * 109.47187 * 330.00646 * 27 25 23 31 31 H 1.09000 * 109.46937 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47096 * 300.00045 * 1 2 3 33 33 H 1.08994 * 109.46741 * 60.00574 * 1 2 3 34 34 H 1.08994 * 109.47139 * 239.99399 * 2 1 3 35 35 H 1.09002 * 109.46626 * 119.99692 * 2 1 3 36 36 H 1.08998 * 110.91129 * 102.24484 * 5 3 2 37 37 H 1.09005 * 110.90416 * 338.64598 * 5 3 2 38 38 H 1.08996 * 110.61659 * 278.52556 * 6 5 3 39 39 H 1.08996 * 110.62396 * 155.52401 * 6 5 3 40 40 H 0.97000 * 120.00317 * 0.28382 * 12 10 8 41 41 H 1.08998 * 109.47134 * 300.00670 * 13 12 10 42 42 H 1.09002 * 109.46857 * 59.99862 * 13 12 10 43 43 H 1.09003 * 109.47088 * 60.00110 * 16 14 13 44 44 H 1.09001 * 109.46729 * 179.97438 * 16 14 13 45 45 H 1.08998 * 109.46866 * 299.99628 * 16 14 13 46 46 H 1.09007 * 109.46969 * 304.99985 * 17 14 13 47 47 H 1.08996 * 109.46836 * 65.00096 * 17 14 13 48 48 H 1.00904 * 110.99672 * 56.04754 * 18 17 14 49 49 H 1.09005 * 109.47218 * 299.99898 * 19 18 17 50 50 H 1.09001 * 109.46872 * 59.99845 * 19 18 17 51 51 H 0.96992 * 120.00129 * 359.97438 * 22 20 19 52 52 H 0.97005 * 119.99231 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5801 2.0108 0.8084 5 6 1.7583 2.1168 -1.3648 6 6 3.0603 2.9230 -1.6037 7 8 4.0920 2.0592 -1.0801 8 6 3.5756 1.4717 0.1258 9 1 3.8678 2.0738 0.9862 10 6 4.1039 0.0687 0.2793 11 8 4.7989 -0.4159 -0.5885 12 7 3.8088 -0.6454 1.3835 13 6 4.3273 -2.0071 1.5355 14 6 3.8478 -2.5899 2.8664 15 1 2.7606 -2.5306 2.9183 16 6 4.4579 -1.7932 4.0214 17 6 4.2842 -4.0528 2.9694 18 7 3.7228 -4.6464 4.1903 19 6 4.1213 -6.0542 4.3224 20 6 3.5286 -6.6277 5.5835 21 8 2.8421 -5.9322 6.3019 22 7 3.7621 -7.9134 5.9138 23 6 3.2233 -8.4351 7.0615 24 1 2.6113 -7.8159 7.7007 25 6 3.4636 -9.7607 7.4017 26 7 4.2078 -10.5142 6.6236 27 14 2.7301 -10.4713 8.9657 28 1 1.3949 -11.0492 8.6681 29 1 3.6232 -11.5342 9.4929 30 1 2.5889 -9.3954 9.9795 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3632 0.5137 -0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.8961 2.7806 -1.3001 37 1 1.6146 1.3697 -2.1454 38 1 3.0342 3.8651 -1.0563 39 1 3.2120 3.1005 -2.6683 40 1 3.2530 -0.2579 2.0776 41 1 3.9648 -2.6275 0.7159 42 1 5.4170 -1.9848 1.5197 43 1 4.1469 -0.7511 3.9480 44 1 4.1159 -2.2082 4.9695 45 1 5.5450 -1.8526 3.9694 46 1 3.9235 -4.6017 2.0994 47 1 5.3723 -4.1055 3.0068 48 1 2.7184 -4.5520 4.2094 49 1 3.7592 -6.6166 3.4618 50 1 5.2083 -6.1212 4.3690 51 1 4.3114 -8.4696 5.3395 52 1 4.3752 -11.4397 6.8609 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753620008.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:59 Heat of formation + Delta-G solvation = -151.424808 kcal Electronic energy + Delta-G solvation = -29721.986741 eV Core-core repulsion = 25527.032299 eV Total energy + Delta-G solvation = -4194.954442 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.78122 -40.17963 -39.60558 -38.17650 -36.36459 -35.92548 -35.36215 -33.45042 -33.14416 -31.29282 -30.49367 -28.79301 -27.53220 -26.51844 -24.96856 -24.31489 -23.49206 -22.19339 -21.67460 -21.10287 -20.60482 -19.87811 -18.20887 -17.86709 -17.73370 -17.32022 -16.97857 -16.57949 -16.39648 -16.26183 -15.96877 -15.75222 -15.49216 -15.31719 -15.14307 -14.95639 -14.53199 -14.33544 -14.28133 -13.94009 -13.60429 -13.48734 -13.39335 -13.16684 -13.06786 -13.01338 -12.83892 -12.58344 -12.41311 -12.22826 -12.12321 -12.10641 -12.01210 -11.93697 -11.70768 -11.63895 -11.56830 -11.49758 -11.11663 -10.51169 -10.33202 -10.01041 -10.00223 -9.29390 -8.46218 -5.95065 1.38594 1.42406 1.53578 1.55247 1.89953 2.06049 2.29800 2.91551 3.04762 3.21234 3.37499 3.53495 3.60178 3.70466 3.86849 3.95806 4.01303 4.08032 4.20281 4.26702 4.33330 4.40226 4.45603 4.48407 4.50475 4.52419 4.58805 4.63272 4.73107 4.76498 4.82037 4.84915 4.86888 4.96844 4.98763 5.09720 5.12022 5.17953 5.23976 5.26080 5.40722 5.41156 5.41447 5.55270 5.79361 5.88918 6.10293 6.42936 6.49714 6.60459 7.12969 7.18874 7.56947 8.11856 8.71138 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027511 B = 0.001585 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.528044 B =17662.648575 C =18088.332550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C -0.106 4.106 4 H 0.127 0.873 5 C -0.145 4.145 6 C 0.037 3.963 7 O -0.387 6.387 8 C 0.058 3.942 9 H 0.120 0.880 10 C 0.515 3.485 11 O -0.576 6.576 12 N -0.709 5.709 13 C 0.131 3.869 14 C -0.085 4.085 15 H 0.088 0.912 16 C -0.137 4.137 17 C 0.066 3.934 18 N -0.675 5.675 19 C 0.064 3.936 20 C 0.438 3.562 21 O -0.621 6.621 22 N -0.574 5.574 23 C -0.334 4.334 24 H 0.080 0.920 25 C -0.014 4.014 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.270 1.270 29 H -0.272 1.272 30 H -0.273 1.273 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.037 0.963 35 H 0.084 0.916 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.417 0.583 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.048 0.952 46 H 0.040 0.960 47 H 0.076 0.924 48 H 0.345 0.655 49 H 0.065 0.935 50 H 0.102 0.898 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.243 26.385 -15.660 31.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C -0.125 4.125 4 H 0.145 0.855 5 C -0.183 4.183 6 C -0.039 4.039 7 O -0.306 6.306 8 C -0.003 4.003 9 H 0.137 0.863 10 C 0.302 3.698 11 O -0.455 6.455 12 N -0.365 5.365 13 C 0.007 3.993 14 C -0.104 4.104 15 H 0.106 0.894 16 C -0.194 4.194 17 C -0.064 4.064 18 N -0.308 5.308 19 C -0.068 4.068 20 C 0.226 3.774 21 O -0.508 6.508 22 N -0.212 5.212 23 C -0.464 4.464 24 H 0.098 0.902 25 C -0.213 4.213 26 N -0.562 5.562 27 Si 0.817 3.183 28 H -0.196 1.196 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.102 0.898 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.255 0.745 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.058 0.942 47 H 0.095 0.905 48 H 0.164 0.836 49 H 0.083 0.917 50 H 0.120 0.880 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.409 26.488 -15.472 30.991 hybrid contribution -0.625 -1.380 -0.015 1.515 sum -5.035 25.108 -15.487 29.927 Atomic orbital electron populations 1.21734 0.94026 1.01905 1.02738 1.22025 0.97648 0.95201 1.02427 1.22649 0.91193 0.98117 1.00529 0.85539 1.23245 0.99106 0.99811 0.96127 1.23877 0.85721 0.93593 1.00691 1.88978 1.39775 1.62048 1.39819 1.22956 0.95272 0.91003 0.91027 0.86259 1.20892 0.79316 0.88179 0.81416 1.90706 1.39491 1.72529 1.42786 1.46007 1.53319 1.15727 1.21414 1.21242 0.98865 0.82201 0.96979 1.21192 1.01554 0.94024 0.93644 0.89419 1.21716 1.00445 0.99354 0.97909 1.21972 1.00547 0.93985 0.89868 1.60042 1.17151 1.14499 1.39058 1.21524 1.01552 0.89783 0.93971 1.20868 0.84816 0.82180 0.89533 1.90484 1.44357 1.60327 1.55623 1.41949 1.46381 1.10202 1.22633 1.19685 1.29932 0.95581 1.01202 0.90208 1.26051 0.97124 0.95939 1.02220 1.69681 1.38440 1.08716 1.39336 0.84915 0.78154 0.77798 0.77391 1.19593 1.19647 1.19738 0.93221 0.91027 0.92332 0.94400 0.89789 0.87101 0.91648 0.89577 0.88368 0.74451 0.92075 0.92123 0.91471 0.92703 0.93244 0.94192 0.90527 0.83621 0.91703 0.88040 0.77028 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.79 71.99 0.70 -0.62 16 2 C -0.14 -1.56 4.15 30.60 0.13 -1.43 16 3 C -0.11 -0.93 3.04 -9.80 -0.03 -0.96 16 4 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 5 C -0.15 -1.23 6.03 31.89 0.19 -1.04 16 6 C 0.04 0.40 7.72 72.66 0.56 0.96 16 7 O -0.39 -7.90 10.74 -130.27 -1.40 -9.29 16 8 C 0.06 0.85 3.84 30.22 0.12 0.97 16 9 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 10 C 0.51 10.61 5.65 87.66 0.50 11.11 16 11 O -0.58 -18.23 16.53 15.67 0.26 -17.97 16 12 N -0.71 -10.32 3.50 -463.06 -1.62 -11.94 16 13 C 0.13 2.26 5.06 86.38 0.44 2.70 16 14 C -0.09 -1.41 2.57 -10.80 -0.03 -1.44 16 15 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 16 C -0.14 -2.41 8.95 71.98 0.64 -1.76 16 17 C 0.07 1.39 5.07 86.30 0.44 1.83 16 18 N -0.68 -19.71 5.58 -517.93 -2.89 -22.60 16 19 C 0.06 2.14 6.17 85.55 0.53 2.67 16 20 C 0.44 20.58 7.82 87.65 0.69 21.27 16 21 O -0.62 -33.81 15.78 -3.07 -0.05 -33.86 16 22 N -0.57 -29.38 5.29 -306.98 -1.62 -31.00 16 23 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 24 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 25 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 26 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 27 Si 0.99 42.77 29.55 68.60 2.03 44.80 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 29 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 30 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.48 7.62 -2.39 -0.02 0.46 16 34 H 0.04 0.67 7.70 -2.39 -0.02 0.65 16 35 H 0.08 0.91 4.89 -2.39 -0.01 0.90 16 36 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.77 7.77 -2.38 -0.02 0.75 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.42 3.57 6.76 -92.71 -0.63 2.94 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 0.85 7.18 -2.39 -0.02 0.84 16 44 H 0.05 1.26 7.75 -2.39 -0.02 1.24 16 45 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 47 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 48 H 0.35 10.44 8.43 -89.69 -0.76 9.68 16 49 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 50 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 51 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 52 H 0.28 14.01 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -77.31 415.98 -0.04 -77.35 By element: Atomic # 1 Polarization: 39.28 SS G_CDS: -1.18 Total: 38.10 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 6.15 Total: 15.84 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -5.85 Total: -114.97 kcal Atomic # 8 Polarization: -59.93 SS G_CDS: -1.19 Total: -61.12 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -77.31 -0.04 -77.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620008.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.078 kcal (2) G-P(sol) polarization free energy of solvation -77.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds