Wall clock time and date at job start Wed Apr 1 2020 00:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 H 1.08999 * 110.53843 * 52.38374 * 3 2 1 5 5 C 1.54815 * 110.49083 * 289.76741 * 3 2 1 6 6 C 1.54990 * 102.09285 * 220.44339 * 5 3 2 7 7 O 1.44376 * 103.49350 * 37.02437 * 6 5 3 8 8 C 1.43752 * 106.97541 * 319.93830 * 7 6 5 9 9 H 1.09000 * 109.87896 * 266.94068 * 8 7 6 10 10 C 1.50698 * 109.87815 * 145.93449 * 8 7 6 11 11 O 1.21283 * 120.00472 * 356.45827 * 10 8 7 12 12 N 1.34777 * 119.99538 * 176.45165 * 10 8 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08998 * 109.46700 * 305.00136 * 14 13 12 16 16 C 1.53004 * 109.47137 * 65.00035 * 14 13 12 17 17 C 1.52998 * 109.47023 * 185.00121 * 14 13 12 18 18 N 1.46901 * 109.46995 * 175.00109 * 17 14 13 19 19 C 1.46896 * 111.00145 * 180.02562 * 18 17 14 20 20 C 1.50705 * 109.47287 * 180.02562 * 19 18 17 21 21 O 1.21293 * 119.99553 * 359.97438 * 20 19 18 22 22 N 1.34780 * 119.99935 * 180.02562 * 20 19 18 23 23 C 1.37100 * 119.99749 * 180.02562 * 22 20 19 24 24 H 1.08007 * 119.99719 * 359.97438 * 23 22 20 25 25 C 1.38949 * 119.99917 * 179.97438 * 23 22 20 26 26 N 1.31404 * 119.99962 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99723 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47569 * 60.00095 * 27 25 23 29 29 H 1.48504 * 109.46908 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47363 * 299.99569 * 27 25 23 31 31 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46898 * 299.99318 * 1 2 3 33 33 H 1.09001 * 109.47473 * 60.00220 * 1 2 3 34 34 H 1.09005 * 109.47080 * 240.00125 * 2 1 3 35 35 H 1.08994 * 109.47457 * 120.00476 * 2 1 3 36 36 H 1.08998 * 110.90441 * 102.24052 * 5 3 2 37 37 H 1.09004 * 110.90250 * 338.64390 * 5 3 2 38 38 H 1.09000 * 110.61859 * 278.52011 * 6 5 3 39 39 H 1.08999 * 110.61635 * 155.52364 * 6 5 3 40 40 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 41 41 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 42 42 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 43 43 H 1.09000 * 109.46939 * 300.00085 * 16 14 13 44 44 H 1.09003 * 109.46857 * 59.99834 * 16 14 13 45 45 H 1.08990 * 109.46949 * 180.02562 * 16 14 13 46 46 H 1.09007 * 109.47047 * 294.99607 * 17 14 13 47 47 H 1.09000 * 109.47450 * 54.99982 * 17 14 13 48 48 H 1.00897 * 111.00036 * 303.95294 * 18 17 14 49 49 H 1.09001 * 109.47244 * 299.99587 * 19 18 17 50 50 H 1.08998 * 109.47669 * 59.99797 * 19 18 17 51 51 H 0.96993 * 119.99775 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00372 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0107 0.8085 5 6 1.7582 2.1169 -1.3647 6 6 3.0602 2.9231 -1.6035 7 8 4.0920 2.0594 -1.0802 8 6 3.5756 1.4717 0.1258 9 1 3.8678 2.0738 0.9862 10 6 4.1039 0.0687 0.2791 11 8 4.7989 -0.4159 -0.5887 12 7 3.8042 -0.6475 1.3808 13 6 4.3129 -2.0135 1.5271 14 6 3.8248 -2.6002 2.8532 15 1 4.1127 -1.9393 3.6707 16 6 2.3012 -2.7370 2.8204 17 6 4.4560 -3.9778 3.0645 18 7 4.0830 -4.4892 4.3902 19 6 4.6731 -5.8131 4.6289 20 6 4.2688 -6.3044 5.9950 21 8 3.5594 -5.6188 6.7006 22 7 4.6965 -7.5051 6.4332 23 6 4.3283 -7.9522 7.6758 24 1 3.6959 -7.3421 8.3037 25 6 4.7688 -9.1903 8.1273 26 7 5.5378 -9.9328 7.3631 27 14 4.2676 -9.7992 9.8207 28 1 2.7877 -9.8964 9.8939 29 1 4.8637 -11.1378 10.0617 30 1 4.7528 -8.8477 10.8525 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.8960 2.7806 -1.2999 37 1 1.6145 1.3699 -2.1454 38 1 3.0341 3.8653 -1.0561 39 1 3.2119 3.1007 -2.6682 40 1 3.2482 -0.2601 2.0748 41 1 3.9492 -2.6270 0.7027 42 1 5.4027 -1.9987 1.5157 43 1 1.8515 -1.7556 2.6698 44 1 2.0133 -3.3979 2.0027 45 1 1.9535 -3.1545 3.7652 46 1 4.0976 -4.6634 2.2966 47 1 5.5409 -3.8942 2.9994 48 1 4.3473 -3.8398 5.1157 49 1 4.3166 -6.5116 3.8719 50 1 5.7594 -5.7419 4.5747 51 1 5.2642 -8.0531 5.8690 52 1 5.8457 -10.7969 7.6784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753620009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:03 Heat of formation + Delta-G solvation = -126.045611 kcal Electronic energy + Delta-G solvation = -29776.086171 eV Core-core repulsion = 25582.232253 eV Total energy + Delta-G solvation = -4193.853917 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12088 -38.95737 -38.32919 -37.13904 -35.51518 -34.64377 -33.84851 -32.40321 -31.20485 -30.82012 -29.86810 -27.41835 -26.73449 -24.95475 -24.19870 -23.35271 -22.80842 -21.55826 -20.79811 -20.10260 -19.17467 -17.89646 -17.47947 -17.20699 -16.70646 -16.09812 -15.95435 -15.57901 -15.31007 -15.09822 -14.98206 -14.67859 -14.42418 -14.34510 -13.90589 -13.78075 -13.62600 -13.40409 -13.23987 -13.01172 -12.67394 -12.56312 -12.37007 -12.09288 -11.95940 -11.74596 -11.68993 -11.59811 -11.52278 -11.22148 -11.17946 -11.11704 -11.01385 -10.95719 -10.87244 -10.47901 -10.44678 -10.21790 -9.77778 -9.50436 -9.23026 -8.47047 -8.06610 -7.96301 -6.41908 -3.82932 2.31796 2.58756 3.19759 3.25576 3.29802 3.55387 3.86614 3.90618 4.07286 4.11333 4.22521 4.29638 4.48249 4.67013 4.68213 4.69351 4.77779 4.85342 4.92030 4.93855 4.97577 5.12836 5.16351 5.23174 5.25574 5.30283 5.32848 5.37679 5.45964 5.53830 5.57740 5.62572 5.68274 5.70806 5.74536 5.82734 5.86180 5.90817 5.98075 6.03542 6.18050 6.26434 6.30926 6.37690 7.15918 7.18649 7.54519 7.63751 7.93004 8.05678 8.60887 9.17323 9.54002 10.05371 10.75706 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.031135 B = 0.001565 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.079340 B =17884.845030 C =18365.444995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C -0.113 4.113 4 H 0.094 0.906 5 C -0.149 4.149 6 C 0.043 3.957 7 O -0.347 6.347 8 C 0.061 3.939 9 H 0.094 0.906 10 C 0.518 3.482 11 O -0.519 6.519 12 N -0.726 5.726 13 C 0.124 3.876 14 C -0.099 4.099 15 H 0.077 0.923 16 C -0.141 4.141 17 C 0.066 3.934 18 N -0.665 5.665 19 C 0.051 3.949 20 C 0.441 3.559 21 O -0.584 6.584 22 N -0.563 5.563 23 C -0.301 4.301 24 H 0.102 0.898 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.274 1.274 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.097 0.903 40 H 0.402 0.598 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.044 0.956 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.029 0.971 48 H 0.348 0.652 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.730 23.885 -17.317 30.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C -0.132 4.132 4 H 0.113 0.887 5 C -0.186 4.186 6 C -0.033 4.033 7 O -0.265 6.265 8 C -0.001 4.001 9 H 0.111 0.889 10 C 0.303 3.697 11 O -0.394 6.394 12 N -0.381 5.381 13 C 0.000 4.000 14 C -0.119 4.119 15 H 0.095 0.905 16 C -0.198 4.198 17 C -0.065 4.065 18 N -0.298 5.298 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.469 6.469 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.115 0.885 40 H 0.238 0.762 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.063 0.937 44 H 0.073 0.927 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.048 0.952 48 H 0.167 0.833 49 H 0.104 0.896 50 H 0.061 0.939 51 H 0.226 0.774 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.982 23.489 -17.747 30.257 hybrid contribution 0.673 -0.281 1.029 1.261 sum -6.310 23.208 -16.718 29.291 Atomic orbital electron populations 1.21752 0.95023 1.02147 1.01760 1.22115 0.96868 0.94653 1.04067 1.22591 0.92901 0.98496 0.99204 0.88749 1.23244 0.98583 0.99914 0.96873 1.23648 0.86253 0.93189 1.00249 1.89018 1.37693 1.61080 1.38700 1.22747 0.93894 0.92675 0.90759 0.88858 1.20290 0.80294 0.87166 0.81934 1.90737 1.36755 1.71223 1.40669 1.46152 1.54128 1.15931 1.21915 1.21417 0.99088 0.81596 0.97864 1.21343 0.97449 0.96922 0.96154 0.90482 1.21783 0.93646 1.00604 1.03752 1.21895 0.96984 0.94794 0.92781 1.60049 1.63012 1.03804 1.02913 1.21667 0.96901 0.91917 0.97725 1.19808 0.85656 0.83642 0.88282 1.90515 1.41076 1.57175 1.58099 1.41860 1.45287 1.16010 1.16838 1.19657 1.29204 1.01578 0.92606 0.87975 1.25261 0.96654 0.96126 0.99864 1.69601 1.34659 1.12499 1.37512 0.85913 0.78897 0.77682 0.81683 1.19893 1.20978 1.19933 0.92301 0.92541 0.92809 0.91410 0.89598 0.89742 0.90010 0.91793 0.88491 0.76223 0.91077 0.91385 0.93713 0.92723 0.90369 0.90715 0.95247 0.83265 0.89593 0.93870 0.77447 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.79 37.16 0.36 -0.45 16 2 C -0.14 -0.89 4.15 -26.73 -0.11 -1.01 16 3 C -0.11 -0.63 3.04 -89.09 -0.27 -0.90 16 4 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 5 C -0.15 -0.77 6.03 -24.72 -0.15 -0.92 16 6 C 0.04 0.27 7.72 38.21 0.29 0.56 16 7 O -0.35 -3.62 10.74 -54.79 -0.59 -4.21 16 8 C 0.06 0.49 3.84 -27.31 -0.10 0.38 16 9 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 10 C 0.52 5.44 5.66 -10.99 -0.06 5.38 16 11 O -0.52 -7.94 16.53 -14.01 -0.23 -8.17 16 12 N -0.73 -5.75 3.49 -60.29 -0.21 -5.96 16 13 C 0.12 1.12 5.06 -4.04 -0.02 1.10 16 14 C -0.10 -0.90 2.57 -90.62 -0.23 -1.13 16 15 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 16 C -0.14 -1.30 8.95 37.16 0.33 -0.96 16 17 C 0.07 0.74 5.07 -3.82 -0.02 0.72 16 18 N -0.67 -10.07 5.58 -115.06 -0.64 -10.71 16 19 C 0.05 0.87 6.17 -4.98 -0.03 0.84 16 20 C 0.44 10.28 7.82 -10.98 -0.09 10.20 16 21 O -0.58 -15.63 15.78 5.55 0.09 -15.55 16 22 N -0.56 -14.23 5.29 -10.96 -0.06 -14.28 16 23 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 24 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 27 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 28 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 30 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.05 0.27 7.63 -51.93 -0.40 -0.13 16 34 H 0.07 0.59 7.70 -51.93 -0.40 0.19 16 35 H 0.09 0.54 4.02 -51.93 -0.21 0.33 16 36 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.50 7.77 -51.93 -0.40 0.10 16 38 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.40 2.23 6.76 -40.82 -0.28 1.95 16 41 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.32 6.33 -51.93 -0.33 -0.01 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.08 0.92 7.75 -51.93 -0.40 0.51 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 47 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 48 H 0.35 5.44 8.43 -39.29 -0.33 5.10 16 49 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 50 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 52 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 414.26 15.07 6.24 6.24 Total: -1.00 -34.45 414.26 -8.96 -43.41 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -8.92 Total: 11.22 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.34 Total: 5.81 kcal Atomic # 7 Polarization: -54.53 SS G_CDS: -0.19 Total: -54.72 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.73 Total: -27.93 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.45 -8.96 -43.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.635 kcal (2) G-P(sol) polarization free energy of solvation -34.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds