Wall clock time and date at job start Wed Apr 1 2020 00:28:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46978 * 2 1 4 4 H 1.08999 * 110.53843 * 52.38374 * 3 2 1 5 5 C 1.54815 * 110.49083 * 289.76741 * 3 2 1 6 6 C 1.54990 * 102.09285 * 220.44339 * 5 3 2 7 7 O 1.44376 * 103.49350 * 37.02437 * 6 5 3 8 8 C 1.43752 * 106.97541 * 319.93830 * 7 6 5 9 9 H 1.09000 * 109.87896 * 266.94068 * 8 7 6 10 10 C 1.50698 * 109.87815 * 145.93449 * 8 7 6 11 11 O 1.21283 * 120.00472 * 356.45827 * 10 8 7 12 12 N 1.34777 * 119.99538 * 176.45165 * 10 8 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 H 1.08998 * 109.46700 * 305.00136 * 14 13 12 16 16 C 1.53004 * 109.47137 * 65.00035 * 14 13 12 17 17 C 1.52998 * 109.47023 * 185.00121 * 14 13 12 18 18 N 1.46901 * 109.46995 * 175.00109 * 17 14 13 19 19 C 1.46896 * 111.00145 * 180.02562 * 18 17 14 20 20 C 1.50705 * 109.47287 * 180.02562 * 19 18 17 21 21 O 1.21293 * 119.99553 * 359.97438 * 20 19 18 22 22 N 1.34780 * 119.99935 * 180.02562 * 20 19 18 23 23 C 1.37100 * 119.99749 * 180.02562 * 22 20 19 24 24 H 1.08007 * 119.99719 * 359.97438 * 23 22 20 25 25 C 1.38949 * 119.99917 * 179.97438 * 23 22 20 26 26 N 1.31404 * 119.99962 * 359.97438 * 25 23 22 27 27 Si 1.86798 * 119.99723 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.47569 * 60.00095 * 27 25 23 29 29 H 1.48504 * 109.46908 * 179.97438 * 27 25 23 30 30 H 1.48501 * 109.47363 * 299.99569 * 27 25 23 31 31 H 1.09002 * 109.46911 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46898 * 299.99318 * 1 2 3 33 33 H 1.09001 * 109.47473 * 60.00220 * 1 2 3 34 34 H 1.09005 * 109.47080 * 240.00125 * 2 1 3 35 35 H 1.08994 * 109.47457 * 120.00476 * 2 1 3 36 36 H 1.08998 * 110.90441 * 102.24052 * 5 3 2 37 37 H 1.09004 * 110.90250 * 338.64390 * 5 3 2 38 38 H 1.09000 * 110.61859 * 278.52011 * 6 5 3 39 39 H 1.08999 * 110.61635 * 155.52364 * 6 5 3 40 40 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 41 41 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 42 42 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 43 43 H 1.09000 * 109.46939 * 300.00085 * 16 14 13 44 44 H 1.09003 * 109.46857 * 59.99834 * 16 14 13 45 45 H 1.08990 * 109.46949 * 180.02562 * 16 14 13 46 46 H 1.09007 * 109.47047 * 294.99607 * 17 14 13 47 47 H 1.09000 * 109.47450 * 54.99982 * 17 14 13 48 48 H 1.00897 * 111.00036 * 303.95294 * 18 17 14 49 49 H 1.09001 * 109.47244 * 299.99587 * 19 18 17 50 50 H 1.08998 * 109.47669 * 59.99797 * 19 18 17 51 51 H 0.96993 * 119.99775 * 359.97438 * 22 20 19 52 52 H 0.97001 * 120.00372 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0107 0.8085 5 6 1.7582 2.1169 -1.3647 6 6 3.0602 2.9231 -1.6035 7 8 4.0920 2.0594 -1.0802 8 6 3.5756 1.4717 0.1258 9 1 3.8678 2.0738 0.9862 10 6 4.1039 0.0687 0.2791 11 8 4.7989 -0.4159 -0.5887 12 7 3.8042 -0.6475 1.3808 13 6 4.3129 -2.0135 1.5271 14 6 3.8248 -2.6002 2.8532 15 1 4.1127 -1.9393 3.6707 16 6 2.3012 -2.7370 2.8204 17 6 4.4560 -3.9778 3.0645 18 7 4.0830 -4.4892 4.3902 19 6 4.6731 -5.8131 4.6289 20 6 4.2688 -6.3044 5.9950 21 8 3.5594 -5.6188 6.7006 22 7 4.6965 -7.5051 6.4332 23 6 4.3283 -7.9522 7.6758 24 1 3.6959 -7.3421 8.3037 25 6 4.7688 -9.1903 8.1273 26 7 5.5378 -9.9328 7.3631 27 14 4.2676 -9.7992 9.8207 28 1 2.7877 -9.8964 9.8939 29 1 4.8637 -11.1378 10.0617 30 1 4.7528 -8.8477 10.8525 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 0.8960 2.7806 -1.2999 37 1 1.6145 1.3699 -2.1454 38 1 3.0341 3.8653 -1.0561 39 1 3.2119 3.1007 -2.6682 40 1 3.2482 -0.2601 2.0748 41 1 3.9492 -2.6270 0.7027 42 1 5.4027 -1.9987 1.5157 43 1 1.8515 -1.7556 2.6698 44 1 2.0133 -3.3979 2.0027 45 1 1.9535 -3.1545 3.7652 46 1 4.0976 -4.6634 2.2966 47 1 5.5409 -3.8942 2.9994 48 1 4.3473 -3.8398 5.1157 49 1 4.3166 -6.5116 3.8719 50 1 5.7594 -5.7419 4.5747 51 1 5.2642 -8.0531 5.8690 52 1 5.8457 -10.7969 7.6784 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753620009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:02 Heat of formation + Delta-G solvation = -151.142743 kcal Electronic energy + Delta-G solvation = -29777.174464 eV Core-core repulsion = 25582.232253 eV Total energy + Delta-G solvation = -4194.942211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.78936 -40.17728 -39.60202 -38.18255 -36.37719 -35.91483 -35.33803 -33.45533 -33.14643 -31.30047 -30.47343 -28.78619 -27.55254 -26.51500 -24.98511 -24.27594 -23.48671 -22.19458 -21.63488 -21.09789 -20.65988 -19.87828 -18.19250 -17.83911 -17.73472 -17.32815 -16.97326 -16.65878 -16.45085 -16.11962 -15.81945 -15.79717 -15.66763 -15.28315 -15.15719 -14.99330 -14.45842 -14.34743 -14.27420 -13.90158 -13.60189 -13.49996 -13.38087 -13.16987 -13.08167 -12.98132 -12.83121 -12.58002 -12.42654 -12.21903 -12.12614 -12.10069 -12.01182 -11.94589 -11.72122 -11.62365 -11.51166 -11.48924 -11.11438 -10.51152 -10.33065 -10.01095 -10.00482 -9.29524 -8.45851 -5.94854 1.40608 1.42462 1.53439 1.53583 1.89648 2.06294 2.29958 2.91673 3.04931 3.21502 3.37946 3.53480 3.60643 3.70819 3.87428 3.96077 4.00932 4.07859 4.21302 4.26889 4.33442 4.40769 4.46507 4.48651 4.50032 4.53959 4.58833 4.63470 4.73798 4.76327 4.82197 4.84148 4.88953 4.97377 4.99060 5.07742 5.13530 5.21448 5.24398 5.27229 5.40667 5.41245 5.42912 5.57542 5.79435 5.88942 6.10297 6.42583 6.49430 6.60632 7.12985 7.18656 7.57049 8.11983 8.71245 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.031135 B = 0.001565 C = 0.001524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.079340 B =17884.845030 C =18365.444995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.136 4.136 3 C -0.106 4.106 4 H 0.126 0.874 5 C -0.145 4.145 6 C 0.037 3.963 7 O -0.387 6.387 8 C 0.058 3.942 9 H 0.120 0.880 10 C 0.515 3.485 11 O -0.576 6.576 12 N -0.709 5.709 13 C 0.131 3.869 14 C -0.086 4.086 15 H 0.086 0.914 16 C -0.136 4.136 17 C 0.066 3.934 18 N -0.675 5.675 19 C 0.064 3.936 20 C 0.438 3.562 21 O -0.622 6.622 22 N -0.574 5.574 23 C -0.336 4.336 24 H 0.080 0.920 25 C -0.013 4.013 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.272 1.272 29 H -0.271 1.271 30 H -0.271 1.271 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.037 0.963 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.417 0.583 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.077 0.923 47 H 0.039 0.961 48 H 0.345 0.655 49 H 0.102 0.898 50 H 0.065 0.935 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.619 25.319 -16.950 31.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C -0.125 4.125 4 H 0.144 0.856 5 C -0.183 4.183 6 C -0.039 4.039 7 O -0.306 6.306 8 C -0.003 4.003 9 H 0.137 0.863 10 C 0.302 3.698 11 O -0.455 6.455 12 N -0.365 5.365 13 C 0.007 3.993 14 C -0.105 4.105 15 H 0.104 0.896 16 C -0.193 4.193 17 C -0.064 4.064 18 N -0.307 5.307 19 C -0.068 4.068 20 C 0.226 3.774 21 O -0.508 6.508 22 N -0.211 5.211 23 C -0.465 4.465 24 H 0.098 0.902 25 C -0.213 4.213 26 N -0.561 5.561 27 Si 0.817 3.183 28 H -0.197 1.197 29 H -0.196 1.196 30 H -0.196 1.196 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.104 0.896 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.104 0.896 39 H 0.116 0.884 40 H 0.255 0.745 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.086 0.914 44 H 0.069 0.931 45 H 0.073 0.927 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.164 0.836 49 H 0.120 0.880 50 H 0.083 0.917 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.888 24.935 -17.379 31.401 hybrid contribution 0.942 -0.685 0.856 1.445 sum -6.946 24.251 -16.524 30.156 Atomic orbital electron populations 1.21731 0.94004 1.01942 1.02703 1.22055 0.97678 0.95130 1.02540 1.22653 0.91135 0.98193 1.00519 0.85556 1.23244 0.99077 0.99804 0.96138 1.23878 0.85747 0.93590 1.00683 1.88979 1.39783 1.62045 1.39826 1.22959 0.95320 0.90994 0.91014 0.86308 1.20893 0.79312 0.88203 0.81404 1.90706 1.39490 1.72606 1.42695 1.46008 1.53501 1.15304 1.21682 1.21248 0.98581 0.82063 0.97407 1.21198 0.97183 0.95832 0.96293 0.89558 1.21728 0.93665 1.01741 1.02209 1.21971 0.97819 0.95895 0.90682 1.60043 1.63331 1.02936 1.04408 1.21525 0.98197 0.93240 0.93870 1.20869 0.84045 0.82488 0.90019 1.90483 1.42472 1.57978 1.59873 1.41942 1.45863 1.16904 1.16421 1.19652 1.30483 1.02437 0.93939 0.90195 1.26048 0.96209 0.95695 1.03343 1.69666 1.34831 1.12772 1.38878 0.84978 0.78534 0.77525 0.77231 1.19715 1.19584 1.19632 0.93154 0.91032 0.92380 0.94422 0.89615 0.87097 0.91632 0.89600 0.88373 0.74457 0.91983 0.92198 0.91351 0.93145 0.92710 0.90463 0.94269 0.83649 0.88014 0.91745 0.77028 0.91325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.79 71.98 0.70 -0.59 16 2 C -0.14 -1.56 4.15 30.59 0.13 -1.43 16 3 C -0.11 -0.93 3.04 -9.80 -0.03 -0.96 16 4 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 5 C -0.15 -1.23 6.03 31.89 0.19 -1.03 16 6 C 0.04 0.40 7.72 72.66 0.56 0.96 16 7 O -0.39 -7.92 10.74 -130.27 -1.40 -9.32 16 8 C 0.06 0.85 3.84 30.22 0.12 0.96 16 9 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 10 C 0.51 10.64 5.66 87.66 0.50 11.13 16 11 O -0.58 -18.24 16.53 15.67 0.26 -17.98 16 12 N -0.71 -10.36 3.49 -463.05 -1.61 -11.97 16 13 C 0.13 2.26 5.06 86.38 0.44 2.70 16 14 C -0.09 -1.43 2.57 -10.79 -0.03 -1.45 16 15 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 16 C -0.14 -2.32 8.95 71.98 0.64 -1.67 16 17 C 0.07 1.39 5.07 86.30 0.44 1.83 16 18 N -0.67 -19.72 5.58 -517.92 -2.89 -22.61 16 19 C 0.06 2.14 6.17 85.56 0.53 2.67 16 20 C 0.44 20.58 7.82 87.66 0.69 21.27 16 21 O -0.62 -33.82 15.78 -3.07 -0.05 -33.87 16 22 N -0.57 -29.37 5.29 -306.97 -1.62 -31.00 16 23 C -0.34 -19.02 9.68 84.04 0.81 -18.20 16 24 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 25 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 26 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 27 Si 0.99 42.75 29.55 68.60 2.03 44.78 16 28 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 29 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 30 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.47 7.63 -2.39 -0.02 0.45 16 34 H 0.04 0.66 7.70 -2.38 -0.02 0.64 16 35 H 0.09 0.92 4.02 -2.39 -0.01 0.91 16 36 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.06 0.77 7.77 -2.38 -0.02 0.75 16 38 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.42 3.59 6.76 -92.71 -0.63 2.96 16 41 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 0.82 6.33 -2.39 -0.02 0.80 16 44 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.05 1.23 7.75 -2.39 -0.02 1.21 16 46 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 47 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.34 10.49 8.43 -89.70 -0.76 9.73 16 49 H 0.10 3.11 8.14 -2.39 -0.02 3.09 16 50 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 52 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -77.21 414.26 -0.03 -77.24 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: -1.18 Total: 38.22 kcal Atomic # 6 Polarization: 9.79 SS G_CDS: 6.15 Total: 15.94 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -5.84 Total: -115.01 kcal Atomic # 8 Polarization: -59.98 SS G_CDS: -1.19 Total: -61.17 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -77.21 -0.03 -77.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753620009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.905 kcal (2) G-P(sol) polarization free energy of solvation -77.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds