Wall clock time and date at job start Wed Apr 1 2020 00:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47246 * 2 1 4 4 H 1.08997 * 110.67299 * 52.03656 * 3 2 1 5 5 O 1.44379 * 110.61541 * 289.06988 * 3 2 1 6 6 C 1.43749 * 106.97291 * 201.43425 * 5 3 2 7 7 C 1.54097 * 107.29286 * 26.52064 * 6 5 3 8 8 C 1.54816 * 104.19036 * 357.96782 * 7 6 5 9 9 H 1.08997 * 110.91012 * 97.35036 * 8 7 6 10 10 C 1.50698 * 110.90733 * 220.92642 * 8 7 6 11 11 O 1.21283 * 120.00472 * 118.54465 * 10 8 7 12 12 N 1.34777 * 119.99538 * 298.53802 * 10 8 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 H 1.08999 * 109.47480 * 35.27807 * 13 12 10 15 15 C 1.53008 * 109.47014 * 275.27733 * 13 12 10 16 16 C 1.52999 * 109.47493 * 155.28120 * 13 12 10 17 17 C 1.53008 * 109.46593 * 295.00052 * 16 13 12 18 18 N 1.46900 * 109.47142 * 179.97438 * 17 16 13 19 19 C 1.46889 * 111.00255 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47581 * 180.02562 * 19 18 17 21 21 O 1.21293 * 119.99744 * 0.02562 * 20 19 18 22 22 N 1.34775 * 120.00621 * 180.02562 * 20 19 18 23 23 C 1.37100 * 120.00520 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99341 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00200 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99811 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00016 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46912 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47015 * 120.00018 * 27 25 23 30 30 H 1.48502 * 109.47267 * 239.99935 * 27 25 23 31 31 H 1.08991 * 109.47442 * 59.99908 * 1 2 3 32 32 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46840 * 299.99747 * 1 2 3 34 34 H 1.09006 * 109.47309 * 240.00083 * 2 1 3 35 35 H 1.09004 * 109.47682 * 120.00377 * 2 1 3 36 36 H 1.08992 * 109.88002 * 267.09384 * 6 5 3 37 37 H 1.09006 * 109.99822 * 146.00795 * 6 5 3 38 38 H 1.08996 * 110.49160 * 239.28821 * 7 6 5 39 39 H 1.09001 * 110.60334 * 116.69997 * 7 6 5 40 40 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 41 41 H 1.09005 * 109.46722 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47169 * 299.99790 * 15 13 12 43 43 H 1.08995 * 109.47066 * 60.00517 * 15 13 12 44 44 H 1.08998 * 109.47257 * 54.99513 * 16 13 12 45 45 H 1.08993 * 109.47436 * 175.00131 * 16 13 12 46 46 H 1.08998 * 109.46879 * 299.99693 * 17 16 13 47 47 H 1.09001 * 109.47112 * 59.99648 * 17 16 13 48 48 H 1.00906 * 110.99828 * 303.95714 * 18 17 16 49 49 H 1.08997 * 109.47713 * 300.00581 * 19 18 17 50 50 H 1.09010 * 109.47256 * 60.00442 * 19 18 17 51 51 H 0.97004 * 119.99508 * 359.97438 * 22 20 19 52 52 H 0.97001 * 119.99738 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5768 2.0144 0.8040 5 8 1.7932 2.0690 -1.2772 6 6 2.7072 3.1730 -1.3867 7 6 3.9333 2.8408 -0.5142 8 6 3.5845 1.4753 0.1264 9 1 4.0384 0.6565 -0.4318 10 6 4.0066 1.4362 1.5725 11 8 3.1764 1.2795 2.4426 12 7 5.3069 1.5752 1.8988 13 6 5.7166 1.5431 3.3050 14 1 5.0906 0.8365 3.8499 15 6 5.5598 2.9381 3.9138 16 6 7.1799 1.1068 3.4002 17 6 7.3152 -0.3351 2.9062 18 7 8.7203 -0.7540 2.9970 19 6 8.8886 -2.1366 2.5305 20 6 10.3392 -2.5303 2.6388 21 8 11.1528 -1.7372 3.0633 22 7 10.7326 -3.7637 2.2640 23 6 12.0522 -4.1220 2.3629 24 1 12.7766 -3.4158 2.7409 25 6 12.4577 -5.3938 1.9770 26 7 11.5761 -6.2533 1.5176 27 14 14.2558 -5.8817 2.1112 28 1 15.0385 -4.7427 2.6545 29 1 14.3854 -7.0490 3.0200 30 1 14.7728 -6.2416 0.7664 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.2318 4.0850 -1.0259 37 1 3.0147 3.3009 -2.4246 38 1 4.0703 3.5997 0.2561 39 1 4.8296 2.7562 -1.1286 40 1 5.9709 1.7007 1.2030 41 1 5.8651 2.9144 4.9599 42 1 6.1859 3.6447 3.3690 43 1 4.5174 3.2490 3.8461 44 1 7.7952 1.7614 2.7830 45 1 7.5107 1.1682 4.4369 46 1 6.6999 -0.9898 3.5234 47 1 6.9843 -0.3965 1.8694 48 1 9.3193 -0.1238 2.4849 49 1 8.2846 -2.8037 3.1455 50 1 8.5682 -2.2111 1.4912 51 1 10.0819 -4.3981 1.9248 52 1 11.8591 -7.1412 1.2485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753986487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:51 Heat of formation + Delta-G solvation = -140.377972 kcal Electronic energy + Delta-G solvation = -29678.897816 eV Core-core repulsion = 25484.422401 eV Total energy + Delta-G solvation = -4194.475415 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.92367 -39.16429 -38.32858 -36.96024 -35.06226 -33.90536 -33.82945 -33.15439 -31.43290 -31.18554 -29.33465 -28.75046 -26.28083 -24.72168 -24.07185 -23.02906 -22.24009 -21.55997 -21.06869 -20.51550 -19.25844 -17.98410 -17.86365 -16.81810 -16.61569 -16.20301 -15.87131 -15.64370 -15.38144 -15.07621 -14.72873 -14.42729 -14.11698 -13.98928 -13.90115 -13.80516 -13.68623 -13.61075 -13.40030 -13.13602 -12.93453 -12.47457 -12.32977 -12.28242 -12.00487 -11.87021 -11.72623 -11.54558 -11.37218 -11.29731 -11.21157 -11.15216 -11.09740 -11.01959 -10.99738 -10.36000 -10.24445 -10.19663 -9.96247 -9.54156 -9.41595 -8.49255 -8.09794 -7.98195 -6.43799 -3.84722 2.26873 2.77002 3.14781 3.25479 3.32676 3.39577 3.88084 3.97597 4.01129 4.15052 4.22135 4.28891 4.52480 4.69685 4.72788 4.74241 4.80600 4.85733 4.94050 4.99650 5.11283 5.13401 5.19453 5.24088 5.24854 5.27670 5.30716 5.41832 5.46035 5.47520 5.51163 5.59040 5.69004 5.73725 5.74730 5.84641 5.85354 5.90650 5.96291 6.01746 6.03685 6.23489 6.24482 6.48899 7.14210 7.16846 7.53476 7.61650 7.87070 8.04391 8.58910 9.15801 9.52070 10.03284 10.73984 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.001812 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.665035 B =15448.752146 C =16448.802717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.099 3.901 4 H 0.083 0.917 5 O -0.371 6.371 6 C 0.049 3.951 7 C -0.147 4.147 8 C -0.146 4.146 9 H 0.114 0.886 10 C 0.527 3.473 11 O -0.534 6.534 12 N -0.721 5.721 13 C 0.142 3.858 14 H 0.091 0.909 15 C -0.162 4.162 16 C -0.125 4.125 17 C 0.060 3.940 18 N -0.669 5.669 19 C 0.051 3.949 20 C 0.440 3.560 21 O -0.584 6.584 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.104 0.896 25 C 0.021 3.979 26 N -0.901 5.901 27 Si 0.930 3.070 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.282 1.282 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.400 0.600 41 H 0.068 0.932 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.091 0.909 46 H 0.071 0.929 47 H 0.025 0.975 48 H 0.348 0.652 49 H 0.085 0.915 50 H 0.042 0.958 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.151 17.796 -4.983 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C 0.042 3.958 4 H 0.101 0.899 5 O -0.290 6.290 6 C -0.028 4.028 7 C -0.185 4.185 8 C -0.168 4.168 9 H 0.132 0.868 10 C 0.312 3.688 11 O -0.411 6.411 12 N -0.373 5.373 13 C 0.037 3.963 14 H 0.109 0.891 15 C -0.220 4.220 16 C -0.163 4.163 17 C -0.070 4.070 18 N -0.302 5.302 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.200 5.200 23 C -0.429 4.429 24 H 0.122 0.878 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.757 3.243 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.208 1.208 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.106 0.894 40 H 0.234 0.766 41 H 0.087 0.913 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.043 0.957 48 H 0.167 0.833 49 H 0.104 0.896 50 H 0.060 0.940 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.359 17.767 -3.610 27.261 hybrid contribution 0.996 -0.523 -1.380 1.781 sum -19.363 17.244 -4.990 26.404 Atomic orbital electron populations 1.21701 0.95019 1.01730 1.02125 1.21552 0.97046 0.93805 1.02943 1.23012 0.91044 0.95399 0.86377 0.89907 1.88911 1.58371 1.44936 1.36793 1.23100 0.88845 0.90307 1.00568 1.22945 1.00013 0.95683 0.99892 1.22991 0.99229 1.00353 0.94200 0.86824 1.20181 0.82513 0.75810 0.90271 1.90721 1.51216 1.48665 1.50490 1.46166 1.08084 1.73970 1.09095 1.21020 0.95899 0.97903 0.81446 0.89107 1.22155 1.02222 0.96334 1.01281 1.21882 0.94182 0.96221 1.04025 1.21963 0.90515 0.95693 0.98807 1.60045 1.05392 1.02826 1.61905 1.21662 0.97002 0.91012 0.98479 1.19810 0.89229 0.83756 0.84636 1.90520 1.54164 1.51544 1.50562 1.41879 1.09831 1.11769 1.56561 1.19757 0.84609 0.98206 1.40295 0.87848 1.25278 1.00109 0.95670 0.96973 1.69624 1.34329 1.06803 1.43526 0.85792 0.82025 0.78634 0.77842 1.19205 1.20724 1.20763 0.92241 0.92585 0.92677 0.91189 0.90097 0.92167 0.89454 0.90142 0.89431 0.76559 0.91275 0.92455 0.92245 0.91335 0.89039 0.91075 0.95700 0.83289 0.89634 0.93995 0.77461 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.86 37.15 0.37 -0.83 16 2 C -0.12 -1.00 5.69 -26.73 -0.15 -1.15 16 3 C 0.10 0.88 2.34 -25.67 -0.06 0.82 16 4 H 0.08 0.84 7.53 -51.93 -0.39 0.44 16 5 O -0.37 -3.41 11.08 -35.23 -0.39 -3.80 16 6 C 0.05 0.31 7.70 37.73 0.29 0.60 16 7 C -0.15 -0.80 6.55 -25.20 -0.16 -0.96 16 8 C -0.15 -1.07 2.95 -89.76 -0.26 -1.34 16 9 H 0.11 0.75 8.06 -51.93 -0.42 0.33 16 10 C 0.53 4.81 7.01 -10.99 -0.08 4.74 16 11 O -0.53 -6.74 15.37 5.55 0.09 -6.66 16 12 N -0.72 -5.39 4.48 -53.80 -0.24 -5.63 16 13 C 0.14 1.19 2.57 -67.93 -0.17 1.02 16 14 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 15 C -0.16 -1.24 9.48 37.16 0.35 -0.89 16 16 C -0.12 -1.11 5.01 -26.73 -0.13 -1.25 16 17 C 0.06 0.68 5.57 -3.82 -0.02 0.66 16 18 N -0.67 -10.33 6.12 -115.06 -0.70 -11.04 16 19 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 20 C 0.44 10.34 7.82 -10.99 -0.09 10.25 16 21 O -0.58 -15.76 15.78 5.55 0.09 -15.67 16 22 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 23 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 24 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 25 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 26 N -0.90 -24.48 13.05 55.50 0.72 -23.75 16 27 Si 0.93 20.97 29.55 -169.99 -5.02 15.94 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 30 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 31 H 0.06 0.49 8.06 -51.93 -0.42 0.07 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.43 7.85 -51.93 -0.41 0.02 16 39 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.40 2.24 8.60 -40.82 -0.35 1.88 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.02 0.26 7.75 -51.93 -0.40 -0.14 16 48 H 0.35 5.44 8.43 -39.29 -0.33 5.11 16 49 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 50 H 0.04 0.66 8.14 -51.92 -0.42 0.23 16 51 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 52 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 LS Contribution 425.21 15.07 6.41 6.41 Total: -1.00 -33.16 425.21 -8.79 -41.96 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -9.28 Total: 12.05 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.40 Total: 4.52 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.28 Total: -54.74 kcal Atomic # 8 Polarization: -25.92 SS G_CDS: -0.22 Total: -26.13 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -33.16 -8.79 -41.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753986487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.420 kcal (2) G-P(sol) polarization free energy of solvation -33.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds