Wall clock time and date at job start Wed Apr 1 2020 00:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47246 * 2 1 4 4 H 1.08997 * 110.67299 * 52.03656 * 3 2 1 5 5 O 1.44379 * 110.61541 * 289.06988 * 3 2 1 6 6 C 1.43749 * 106.97291 * 201.43425 * 5 3 2 7 7 C 1.54097 * 107.29286 * 26.52064 * 6 5 3 8 8 C 1.54816 * 104.19036 * 357.96782 * 7 6 5 9 9 H 1.08997 * 110.91012 * 97.35036 * 8 7 6 10 10 C 1.50698 * 110.90733 * 220.92642 * 8 7 6 11 11 O 1.21283 * 120.00472 * 118.54465 * 10 8 7 12 12 N 1.34777 * 119.99538 * 298.53802 * 10 8 7 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 H 1.08999 * 109.47480 * 35.27807 * 13 12 10 15 15 C 1.53008 * 109.47014 * 275.27733 * 13 12 10 16 16 C 1.52999 * 109.47493 * 155.28120 * 13 12 10 17 17 C 1.53008 * 109.46593 * 295.00052 * 16 13 12 18 18 N 1.46900 * 109.47142 * 179.97438 * 17 16 13 19 19 C 1.46889 * 111.00255 * 179.97438 * 18 17 16 20 20 C 1.50698 * 109.47581 * 180.02562 * 19 18 17 21 21 O 1.21293 * 119.99744 * 0.02562 * 20 19 18 22 22 N 1.34775 * 120.00621 * 180.02562 * 20 19 18 23 23 C 1.37100 * 120.00520 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99341 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00200 * 179.97438 * 23 22 20 26 26 N 1.31416 * 119.99811 * 359.97438 * 25 23 22 27 27 Si 1.86796 * 120.00016 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46912 * 0.02562 * 27 25 23 29 29 H 1.48500 * 109.47015 * 120.00018 * 27 25 23 30 30 H 1.48502 * 109.47267 * 239.99935 * 27 25 23 31 31 H 1.08991 * 109.47442 * 59.99908 * 1 2 3 32 32 H 1.09007 * 109.47386 * 180.02562 * 1 2 3 33 33 H 1.09009 * 109.46840 * 299.99747 * 1 2 3 34 34 H 1.09006 * 109.47309 * 240.00083 * 2 1 3 35 35 H 1.09004 * 109.47682 * 120.00377 * 2 1 3 36 36 H 1.08992 * 109.88002 * 267.09384 * 6 5 3 37 37 H 1.09006 * 109.99822 * 146.00795 * 6 5 3 38 38 H 1.08996 * 110.49160 * 239.28821 * 7 6 5 39 39 H 1.09001 * 110.60334 * 116.69997 * 7 6 5 40 40 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 41 41 H 1.09005 * 109.46722 * 180.02562 * 15 13 12 42 42 H 1.09000 * 109.47169 * 299.99790 * 15 13 12 43 43 H 1.08995 * 109.47066 * 60.00517 * 15 13 12 44 44 H 1.08998 * 109.47257 * 54.99513 * 16 13 12 45 45 H 1.08993 * 109.47436 * 175.00131 * 16 13 12 46 46 H 1.08998 * 109.46879 * 299.99693 * 17 16 13 47 47 H 1.09001 * 109.47112 * 59.99648 * 17 16 13 48 48 H 1.00906 * 110.99828 * 303.95714 * 18 17 16 49 49 H 1.08997 * 109.47713 * 300.00581 * 19 18 17 50 50 H 1.09010 * 109.47256 * 60.00442 * 19 18 17 51 51 H 0.97004 * 119.99508 * 359.97438 * 22 20 19 52 52 H 0.97001 * 119.99738 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5768 2.0144 0.8040 5 8 1.7932 2.0690 -1.2772 6 6 2.7072 3.1730 -1.3867 7 6 3.9333 2.8408 -0.5142 8 6 3.5845 1.4753 0.1264 9 1 4.0384 0.6565 -0.4318 10 6 4.0066 1.4362 1.5725 11 8 3.1764 1.2795 2.4426 12 7 5.3069 1.5752 1.8988 13 6 5.7166 1.5431 3.3050 14 1 5.0906 0.8365 3.8499 15 6 5.5598 2.9381 3.9138 16 6 7.1799 1.1068 3.4002 17 6 7.3152 -0.3351 2.9062 18 7 8.7203 -0.7540 2.9970 19 6 8.8886 -2.1366 2.5305 20 6 10.3392 -2.5303 2.6388 21 8 11.1528 -1.7372 3.0633 22 7 10.7326 -3.7637 2.2640 23 6 12.0522 -4.1220 2.3629 24 1 12.7766 -3.4158 2.7409 25 6 12.4577 -5.3938 1.9770 26 7 11.5761 -6.2533 1.5176 27 14 14.2558 -5.8817 2.1112 28 1 15.0385 -4.7427 2.6545 29 1 14.3854 -7.0490 3.0200 30 1 14.7728 -6.2416 0.7664 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.2318 4.0850 -1.0259 37 1 3.0147 3.3009 -2.4246 38 1 4.0703 3.5997 0.2561 39 1 4.8296 2.7562 -1.1286 40 1 5.9709 1.7007 1.2030 41 1 5.8651 2.9144 4.9599 42 1 6.1859 3.6447 3.3690 43 1 4.5174 3.2490 3.8461 44 1 7.7952 1.7614 2.7830 45 1 7.5107 1.1682 4.4369 46 1 6.6999 -0.9898 3.5234 47 1 6.9843 -0.3965 1.8694 48 1 9.3193 -0.1238 2.4849 49 1 8.2846 -2.8037 3.1455 50 1 8.5682 -2.2111 1.4912 51 1 10.0819 -4.3981 1.9248 52 1 11.8591 -7.1412 1.2485 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753986487.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:50 Heat of formation + Delta-G solvation = -165.295193 kcal Electronic energy + Delta-G solvation = -29679.978308 eV Core-core repulsion = 25484.422401 eV Total energy + Delta-G solvation = -4195.555907 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.59146 -40.18738 -39.79013 -37.90569 -36.29761 -35.70291 -34.52361 -33.83046 -33.27424 -32.10214 -30.31195 -29.33514 -27.79467 -25.87518 -25.23106 -23.68159 -23.13129 -22.22516 -21.80272 -21.19713 -21.03756 -19.91289 -18.58920 -17.84540 -17.53973 -17.26036 -16.96324 -16.49395 -16.46876 -16.13278 -15.91050 -15.82235 -15.32211 -15.20880 -14.95134 -14.64759 -14.57437 -14.34489 -14.25921 -14.00317 -13.81126 -13.64217 -13.49527 -13.34412 -13.08285 -12.95250 -12.81597 -12.58691 -12.44046 -12.41562 -12.26385 -12.12597 -12.04855 -11.87058 -11.79788 -11.79091 -11.61353 -11.51826 -10.90390 -10.61237 -10.37117 -10.11061 -10.02285 -9.32084 -8.47424 -5.96257 1.36558 1.42101 1.56303 1.56981 2.04111 2.11472 2.28746 2.81488 2.88640 3.19870 3.45441 3.49263 3.55162 3.72292 3.89423 4.02184 4.06229 4.11062 4.18684 4.21524 4.26677 4.30948 4.40290 4.43918 4.46464 4.50762 4.53333 4.61775 4.68321 4.76048 4.80420 4.82290 4.84808 4.95036 4.96430 5.04306 5.07624 5.10454 5.19540 5.19754 5.31358 5.36342 5.40809 5.54903 5.88252 5.90122 6.09546 6.43257 6.52496 6.59077 7.11899 7.21313 7.55386 8.10294 8.70167 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.001812 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.665035 B =15448.752146 C =16448.802717 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C 0.098 3.902 4 H 0.063 0.937 5 O -0.389 6.389 6 C 0.041 3.959 7 C -0.139 4.139 8 C -0.141 4.141 9 H 0.126 0.874 10 C 0.527 3.473 11 O -0.574 6.574 12 N -0.710 5.710 13 C 0.148 3.852 14 H 0.071 0.929 15 C -0.156 4.156 16 C -0.113 4.113 17 C 0.063 3.937 18 N -0.683 5.683 19 C 0.065 3.935 20 C 0.437 3.563 21 O -0.622 6.622 22 N -0.574 5.574 23 C -0.333 4.333 24 H 0.080 0.920 25 C -0.015 4.015 26 N -0.921 5.921 27 Si 0.994 3.006 28 H -0.273 1.273 29 H -0.272 1.272 30 H -0.270 1.270 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.413 0.587 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.041 0.959 48 H 0.347 0.653 49 H 0.098 0.902 50 H 0.067 0.933 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.761 18.239 -6.100 27.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.040 3.960 4 H 0.081 0.919 5 O -0.308 6.308 6 C -0.036 4.036 7 C -0.177 4.177 8 C -0.163 4.163 9 H 0.144 0.856 10 C 0.313 3.687 11 O -0.453 6.453 12 N -0.362 5.362 13 C 0.043 3.957 14 H 0.089 0.911 15 C -0.214 4.214 16 C -0.151 4.151 17 C -0.066 4.066 18 N -0.316 5.316 19 C -0.067 4.067 20 C 0.225 3.775 21 O -0.509 6.509 22 N -0.211 5.211 23 C -0.463 4.463 24 H 0.098 0.902 25 C -0.214 4.214 26 N -0.562 5.562 27 Si 0.817 3.183 28 H -0.197 1.197 29 H -0.197 1.197 30 H -0.195 1.195 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.130 0.870 40 H 0.250 0.750 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.104 0.896 46 H 0.084 0.916 47 H 0.059 0.941 48 H 0.166 0.834 49 H 0.117 0.883 50 H 0.085 0.915 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -19.978 18.215 -4.750 27.449 hybrid contribution 0.821 -0.607 -1.021 1.443 sum -19.157 17.608 -5.771 26.652 Atomic orbital electron populations 1.21684 0.94862 1.02154 1.01693 1.21536 0.97278 0.93867 1.02647 1.22912 0.92133 0.95041 0.85866 0.91862 1.88889 1.59463 1.45859 1.36631 1.23315 0.88834 0.89605 1.01835 1.22955 1.00505 0.94317 0.99928 1.22957 0.98126 1.02060 0.93124 0.85566 1.20480 0.82505 0.75004 0.90672 1.90710 1.52344 1.50564 1.51722 1.46061 1.07915 1.73092 1.09131 1.20871 0.95081 0.97922 0.81794 0.91085 1.22095 1.01585 0.95947 1.01807 1.21765 0.94529 0.94966 1.03886 1.22012 0.87945 0.96850 0.99789 1.60031 1.07666 1.01765 1.62144 1.21512 0.92349 0.92482 1.00384 1.20884 0.91565 0.82558 0.82500 1.90488 1.56163 1.52437 1.51805 1.41955 1.09205 1.12677 1.57265 1.19711 0.85638 0.98701 1.42209 0.90242 1.26063 1.04203 0.95112 0.96042 1.69682 1.35937 1.07153 1.43390 0.84858 0.76977 0.78101 0.78323 1.19717 1.19732 1.19518 0.92499 0.91736 0.93227 0.90618 0.91060 0.91931 0.87824 0.89956 0.87007 0.75044 0.90808 0.91081 0.93640 0.89828 0.89643 0.91644 0.94084 0.83437 0.88349 0.91506 0.77002 0.91299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.86 71.98 0.71 -1.67 16 2 C -0.12 -1.98 5.69 30.59 0.17 -1.81 16 3 C 0.10 1.71 2.34 31.28 0.07 1.78 16 4 H 0.06 1.33 7.53 -2.39 -0.02 1.31 16 5 O -0.39 -6.84 11.08 -148.98 -1.65 -8.49 16 6 C 0.04 0.45 7.70 72.35 0.56 1.00 16 7 C -0.14 -1.18 6.55 31.59 0.21 -0.97 16 8 C -0.14 -1.86 2.95 -10.24 -0.03 -1.89 16 9 H 0.13 1.36 8.06 -2.39 -0.02 1.34 16 10 C 0.53 9.09 7.01 87.66 0.61 9.71 16 11 O -0.57 -14.61 15.37 -3.04 -0.05 -14.65 16 12 N -0.71 -9.22 4.48 -442.52 -1.98 -11.20 16 13 C 0.15 2.27 2.57 44.99 0.12 2.39 16 14 H 0.07 1.42 7.58 -2.39 -0.02 1.40 16 15 C -0.16 -2.18 9.48 71.98 0.68 -1.49 16 16 C -0.11 -1.78 5.01 30.60 0.15 -1.63 16 17 C 0.06 1.28 5.57 86.31 0.48 1.76 16 18 N -0.68 -19.95 6.12 -517.94 -3.17 -23.12 16 19 C 0.07 2.16 6.17 85.56 0.53 2.69 16 20 C 0.44 20.50 7.82 87.66 0.69 21.19 16 21 O -0.62 -33.98 15.78 -3.07 -0.05 -34.03 16 22 N -0.57 -29.22 5.29 -306.99 -1.62 -30.84 16 23 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 24 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.31 16 26 N -0.92 -49.43 13.05 21.66 0.28 -49.15 16 27 Si 0.99 42.62 29.55 68.60 2.03 44.65 16 28 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 30 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 31 H 0.06 0.94 8.06 -2.39 -0.02 0.92 16 32 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 33 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 34 H 0.08 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.07 1.34 8.04 -2.39 -0.02 1.32 16 36 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.08 0.69 7.85 -2.39 -0.02 0.67 16 39 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.41 3.35 8.60 -92.71 -0.80 2.55 16 41 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.50 8.14 -2.39 -0.02 1.49 16 46 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.04 0.73 7.75 -2.39 -0.02 0.71 16 48 H 0.35 10.28 8.43 -89.69 -0.76 9.52 16 49 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 50 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 51 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 52 H 0.28 13.91 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -72.51 425.21 -1.34 -73.85 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -1.36 Total: 40.24 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.23 Total: 12.75 kcal Atomic # 7 Polarization: -107.82 SS G_CDS: -6.49 Total: -114.32 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: -1.75 Total: -57.17 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.51 -1.34 -73.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753986487.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.441 kcal (2) G-P(sol) polarization free energy of solvation -72.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds