Wall clock time and date at job start Wed Apr 1 2020 00:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47220 * 2 1 4 4 C 1.50699 * 109.47418 * 240.00018 * 2 1 3 5 5 O 1.21287 * 119.99890 * 25.00248 * 4 2 1 6 6 N 1.34777 * 120.00177 * 204.99798 * 4 2 1 7 7 C 1.46499 * 119.99921 * 174.97640 * 6 4 2 8 8 C 1.52993 * 112.94580 * 65.25301 * 7 6 4 9 9 C 1.53002 * 109.47508 * 58.65528 * 8 7 6 10 10 O 1.42894 * 109.47282 * 175.14431 * 9 8 7 11 11 C 1.53949 * 113.74192 * 293.65799 * 7 6 4 12 12 N 1.47819 * 86.03583 * 222.08572 * 11 7 6 13 13 C 1.36938 * 134.45348 * 204.64335 * 12 11 7 14 14 H 1.07995 * 119.99600 * 179.87075 * 13 12 11 15 15 C 1.38813 * 120.00214 * 359.86582 * 13 12 11 16 16 N 1.31621 * 119.99960 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99966 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47006 * 60.00488 * 17 15 13 19 19 H 1.48501 * 109.47233 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46999 * 300.00100 * 17 15 13 21 21 C 1.47575 * 91.05252 * 24.55217 * 12 11 7 22 22 N 1.46896 * 109.47293 * 119.99911 * 2 1 3 23 23 C 1.47016 * 111.00034 * 63.63572 * 22 2 1 24 24 C 1.53095 * 109.26155 * 177.60903 * 23 22 2 25 25 O 1.43014 * 109.25741 * 56.85015 * 24 23 22 26 26 C 1.43023 * 113.73860 * 301.33133 * 25 24 23 27 27 C 1.47017 * 110.99994 * 300.00555 * 22 2 1 28 28 H 1.08994 * 109.47521 * 300.00423 * 1 2 3 29 29 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47248 * 60.00195 * 1 2 3 31 31 H 1.09005 * 109.46700 * 59.99937 * 3 2 1 32 32 H 1.08997 * 109.47195 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47045 * 299.99797 * 3 2 1 34 34 H 0.96998 * 119.99933 * 354.97809 * 6 4 2 35 35 H 1.09004 * 109.47520 * 178.65703 * 8 7 6 36 36 H 1.09002 * 109.47307 * 298.65439 * 8 7 6 37 37 H 1.08997 * 109.46729 * 295.14817 * 9 8 7 38 38 H 1.09004 * 109.46798 * 55.14418 * 9 8 7 39 39 H 0.96706 * 114.00123 * 179.97438 * 10 9 8 40 40 H 1.09003 * 113.76958 * 336.35227 * 11 7 6 41 41 H 1.08995 * 113.76997 * 107.74583 * 11 7 6 42 42 H 0.96999 * 120.00068 * 180.02562 * 16 15 13 43 43 H 1.09004 * 113.76989 * 221.15542 * 21 12 11 44 44 H 1.08998 * 113.77677 * 89.75204 * 21 12 11 45 45 H 1.09006 * 109.50599 * 297.54711 * 23 22 2 46 46 H 1.09002 * 109.50599 * 57.67341 * 23 22 2 47 47 H 1.09001 * 109.50593 * 296.91656 * 24 23 22 48 48 H 1.09002 * 109.54560 * 176.80309 * 24 23 22 49 49 H 1.09002 * 109.50445 * 298.73330 * 26 25 24 50 50 H 1.09000 * 109.54429 * 178.63124 * 26 25 24 51 51 H 1.09004 * 109.50512 * 302.32360 * 27 22 2 52 52 H 1.08999 * 109.51044 * 62.40636 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3370 -0.7705 -2.2224 6 7 3.2543 -1.2789 -1.2286 7 6 3.6991 -2.0630 -2.3834 8 6 3.8584 -1.2208 -3.6507 9 6 4.8708 -0.1023 -3.3959 10 8 5.1045 0.6143 -4.6098 11 6 2.8978 -3.3599 -2.5978 12 7 4.2010 -3.9969 -2.8820 13 6 4.5956 -5.0959 -3.5973 14 1 5.6422 -5.3563 -3.6536 15 6 3.6504 -5.8754 -4.2498 16 7 2.3748 -5.5579 -4.1815 17 14 4.1887 -7.3742 -5.2262 18 1 4.8810 -8.3297 -4.3246 19 1 2.9977 -8.0303 -5.8229 20 1 5.1155 -6.9537 -6.3076 21 6 4.9059 -2.9722 -2.0877 22 7 2.0196 -0.6924 1.1994 23 6 1.6206 -2.1074 1.1907 24 6 2.2006 -2.8033 2.4249 25 8 1.7569 -2.1229 3.6020 26 6 2.1288 -0.7425 3.6439 27 6 1.5482 -0.0259 2.4220 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8901 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.8393 -1.1689 -0.4628 35 1 4.2126 -1.8529 -4.4650 36 1 2.8963 -0.7853 -3.9209 37 1 4.4773 0.5791 -2.6416 38 1 5.8075 -0.5337 -3.0426 39 1 5.7375 1.3402 -4.5225 40 1 2.4145 -3.7321 -1.6944 41 1 2.2277 -3.3254 -3.4567 42 1 1.7143 -6.1028 -4.6372 43 1 5.8361 -2.6285 -2.5402 44 1 5.0138 -3.2301 -1.0342 45 1 0.5331 -2.1790 1.2098 46 1 2.0019 -2.5875 0.2894 47 1 3.2893 -2.7785 2.3787 48 1 1.8608 -3.8386 2.4531 49 1 3.2155 -0.6579 3.6332 50 1 1.7373 -0.2868 4.5534 51 1 1.8765 1.0135 2.4196 52 1 0.4595 -0.0635 2.4604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755336623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:05 Heat of formation + Delta-G solvation = -56.604264 kcal Electronic energy + Delta-G solvation = -33142.977046 eV Core-core repulsion = 28952.134331 eV Total energy + Delta-G solvation = -4190.842715 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.85716 -39.39707 -38.07449 -36.43565 -36.30014 -33.58900 -32.07406 -31.88360 -31.28794 -30.24801 -27.54688 -27.13293 -26.66826 -25.08783 -24.62918 -23.47507 -22.63664 -21.51061 -20.66261 -19.06953 -18.57818 -17.62901 -17.14684 -16.75890 -16.37652 -15.87259 -15.51366 -15.22423 -15.17293 -15.03861 -14.72310 -14.54324 -14.45433 -14.06803 -13.91369 -13.75176 -13.53742 -12.86520 -12.65220 -12.57916 -12.29116 -12.13123 -12.05064 -11.81710 -11.76411 -11.55002 -11.52770 -11.33733 -11.18024 -11.08003 -10.88015 -10.86060 -10.65621 -10.60983 -10.15954 -9.91656 -9.84479 -9.71050 -9.54193 -9.10094 -8.82655 -8.59704 -8.47512 -6.91473 -5.75617 -3.10270 2.88650 3.39058 3.42705 3.46354 3.47082 3.53346 3.74456 4.42848 4.47037 4.57245 4.68232 4.79233 4.88099 4.92282 4.98982 5.03798 5.11580 5.16779 5.32761 5.33660 5.41739 5.45884 5.48217 5.51346 5.54208 5.59844 5.61467 5.64199 5.67800 5.80112 5.83070 5.86928 5.91345 5.97028 6.14697 6.18460 6.40158 6.49434 6.58502 6.66010 6.71479 6.83844 6.93814 6.99607 7.26046 7.35457 7.60499 7.83967 7.92786 8.00171 8.63684 9.03310 9.70063 10.55532 11.40482 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.004015 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.640850 B = 6971.810919 C = 8397.249645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.089 3.911 3 C -0.135 4.135 4 C 0.526 3.474 5 O -0.527 6.527 6 N -0.707 5.707 7 C 0.123 3.877 8 C -0.097 4.097 9 C 0.083 3.917 10 O -0.573 6.573 11 C 0.177 3.823 12 N -0.603 5.603 13 C -0.227 4.227 14 H 0.080 0.920 15 C -0.003 4.003 16 N -0.916 5.916 17 Si 0.912 3.088 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.119 3.881 22 N -0.522 5.522 23 C 0.004 3.996 24 C 0.067 3.933 25 O -0.387 6.387 26 C 0.065 3.935 27 C 0.012 3.988 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.041 0.959 39 H 0.371 0.629 40 H 0.025 0.975 41 H 0.080 0.920 42 H 0.255 0.745 43 H 0.049 0.951 44 H 0.037 0.963 45 H 0.049 0.951 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.100 0.900 49 H 0.059 0.941 50 H 0.095 0.905 51 H 0.089 0.911 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 15.716 14.907 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 C -0.193 4.193 4 C 0.310 3.690 5 O -0.402 6.402 6 N -0.359 5.359 7 C 0.037 3.963 8 C -0.136 4.136 9 C 0.006 3.994 10 O -0.377 6.377 11 C 0.051 3.949 12 N -0.329 5.329 13 C -0.355 4.355 14 H 0.098 0.902 15 C -0.200 4.200 16 N -0.562 5.562 17 Si 0.742 3.258 18 H -0.212 1.212 19 H -0.215 1.215 20 H -0.210 1.210 21 C -0.007 4.007 22 N -0.248 5.248 23 C -0.124 4.124 24 C -0.009 4.009 25 O -0.305 6.305 26 C -0.012 4.012 27 C -0.116 4.116 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.236 0.764 35 H 0.107 0.893 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.216 0.784 40 H 0.043 0.957 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.067 0.933 46 H 0.117 0.883 47 H 0.080 0.920 48 H 0.118 0.882 49 H 0.077 0.923 50 H 0.113 0.887 51 H 0.107 0.893 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.487 14.825 13.863 20.303 hybrid contribution 0.156 -0.378 0.037 0.410 sum 0.643 14.448 13.900 20.059 Atomic orbital electron populations 1.22245 0.94329 1.03202 1.02813 1.21344 0.94770 0.95357 0.88939 1.21831 1.02051 0.92733 1.02683 1.20074 0.81913 0.78611 0.88402 1.90738 1.56687 1.58484 1.34309 1.46164 1.16628 1.52750 1.20322 1.22973 0.98391 0.90046 0.84918 1.21371 0.99468 0.95495 0.97234 1.22155 0.98159 0.93531 0.85565 1.86540 1.66847 1.49613 1.34740 1.22495 0.89858 0.83685 0.98893 1.45698 1.02650 1.29283 1.55310 1.18891 0.92635 1.00877 1.23070 0.90178 1.24794 0.95270 0.99264 1.00674 1.69823 0.99656 1.40079 1.46627 0.86209 0.77229 0.82469 0.79875 1.21180 1.21536 1.20989 1.22834 0.94225 0.88349 0.95326 1.62472 1.58890 1.02323 1.01158 1.23018 0.99778 0.88629 1.00944 1.22659 0.99106 0.96023 0.83152 1.87987 1.78734 1.22368 1.41460 1.22635 0.99569 0.81953 0.97078 1.22891 0.99056 0.99373 0.90255 0.92001 0.91863 0.90587 0.91534 0.91366 0.91313 0.76443 0.89295 0.90163 0.94567 0.94029 0.78402 0.95727 0.90168 0.93456 0.93269 0.94553 0.93274 0.88265 0.92041 0.88232 0.92289 0.88729 0.89269 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 7.31 37.15 0.27 -1.70 16 2 C 0.09 1.03 0.63 -132.76 -0.08 0.94 16 3 C -0.14 -1.25 8.23 37.16 0.31 -0.95 16 4 C 0.53 8.15 5.08 -10.99 -0.06 8.10 16 5 O -0.53 -10.46 14.33 5.55 0.08 -10.38 16 6 N -0.71 -10.49 3.62 -49.06 -0.18 -10.67 16 7 C 0.12 2.29 0.66 -134.02 -0.09 2.20 16 8 C -0.10 -1.87 4.84 -26.73 -0.13 -2.00 16 9 C 0.08 1.27 6.80 37.16 0.25 1.52 16 10 O -0.57 -8.73 13.66 -35.23 -0.48 -9.21 16 11 C 0.18 4.24 6.34 -2.83 -0.02 4.22 16 12 N -0.60 -15.13 3.54 -177.48 -0.63 -15.76 16 13 C -0.23 -6.31 10.70 -15.06 -0.16 -6.47 16 14 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 15 C 0.00 -0.08 5.50 -17.43 -0.10 -0.17 16 16 N -0.92 -27.49 11.39 55.49 0.63 -26.86 16 17 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 21 C 0.12 2.31 8.05 -2.96 -0.02 2.29 16 22 N -0.52 -5.44 3.88 -219.99 -0.85 -6.29 16 23 C 0.00 0.05 4.90 -3.71 -0.02 0.03 16 24 C 0.07 0.75 7.01 37.21 0.26 1.01 16 25 O -0.39 -4.42 10.83 -35.23 -0.38 -4.80 16 26 C 0.06 0.55 7.01 37.21 0.26 0.81 16 27 C 0.01 0.10 4.87 -3.71 -0.02 0.09 16 28 H 0.06 0.59 6.46 -51.93 -0.34 0.26 16 29 H 0.06 0.85 6.54 -51.93 -0.34 0.51 16 30 H 0.08 0.97 7.87 -51.92 -0.41 0.56 16 31 H 0.07 0.48 6.35 -51.93 -0.33 0.15 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.40 5.05 8.15 -40.82 -0.33 4.71 16 35 H 0.09 2.00 8.03 -51.93 -0.42 1.58 16 36 H 0.08 1.71 6.72 -51.93 -0.35 1.36 16 37 H 0.04 0.50 7.90 -51.93 -0.41 0.09 16 38 H 0.04 0.58 7.18 -51.93 -0.37 0.21 16 39 H 0.37 3.56 9.12 45.56 0.42 3.98 16 40 H 0.03 0.61 7.87 -51.93 -0.41 0.21 16 41 H 0.08 2.26 7.12 -51.93 -0.37 1.89 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.05 0.90 7.28 -51.93 -0.38 0.53 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.05 0.64 6.52 -51.93 -0.34 0.30 16 46 H 0.10 1.45 5.94 -51.93 -0.31 1.15 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.09 0.60 6.19 -51.93 -0.32 0.28 16 52 H 0.05 0.45 6.44 -51.93 -0.33 0.11 16 LS Contribution 394.85 15.07 5.95 5.95 Total: -1.00 -33.83 394.85 -8.07 -41.90 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -7.84 Total: 8.99 kcal Atomic # 6 Polarization: 9.26 SS G_CDS: 0.66 Total: 9.92 kcal Atomic # 7 Polarization: -58.55 SS G_CDS: -1.03 Total: -59.58 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.78 Total: -24.39 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.83 -8.07 -41.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.707 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds