Wall clock time and date at job start Wed Apr 1 2020 00:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47220 * 2 1 4 4 C 1.50699 * 109.47418 * 240.00018 * 2 1 3 5 5 O 1.21287 * 119.99890 * 25.00248 * 4 2 1 6 6 N 1.34777 * 120.00177 * 204.99798 * 4 2 1 7 7 C 1.46499 * 119.99921 * 174.97640 * 6 4 2 8 8 C 1.52993 * 112.94580 * 65.25301 * 7 6 4 9 9 C 1.53002 * 109.47508 * 58.65528 * 8 7 6 10 10 O 1.42894 * 109.47282 * 175.14431 * 9 8 7 11 11 C 1.53949 * 113.74192 * 293.65799 * 7 6 4 12 12 N 1.47819 * 86.03583 * 222.08572 * 11 7 6 13 13 C 1.36938 * 134.45348 * 204.64335 * 12 11 7 14 14 H 1.07995 * 119.99600 * 179.87075 * 13 12 11 15 15 C 1.38813 * 120.00214 * 359.86582 * 13 12 11 16 16 N 1.31621 * 119.99960 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99966 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47006 * 60.00488 * 17 15 13 19 19 H 1.48501 * 109.47233 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.46999 * 300.00100 * 17 15 13 21 21 C 1.47575 * 91.05252 * 24.55217 * 12 11 7 22 22 N 1.46896 * 109.47293 * 119.99911 * 2 1 3 23 23 C 1.47016 * 111.00034 * 63.63572 * 22 2 1 24 24 C 1.53095 * 109.26155 * 177.60903 * 23 22 2 25 25 O 1.43014 * 109.25741 * 56.85015 * 24 23 22 26 26 C 1.43023 * 113.73860 * 301.33133 * 25 24 23 27 27 C 1.47017 * 110.99994 * 300.00555 * 22 2 1 28 28 H 1.08994 * 109.47521 * 300.00423 * 1 2 3 29 29 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47248 * 60.00195 * 1 2 3 31 31 H 1.09005 * 109.46700 * 59.99937 * 3 2 1 32 32 H 1.08997 * 109.47195 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47045 * 299.99797 * 3 2 1 34 34 H 0.96998 * 119.99933 * 354.97809 * 6 4 2 35 35 H 1.09004 * 109.47520 * 178.65703 * 8 7 6 36 36 H 1.09002 * 109.47307 * 298.65439 * 8 7 6 37 37 H 1.08997 * 109.46729 * 295.14817 * 9 8 7 38 38 H 1.09004 * 109.46798 * 55.14418 * 9 8 7 39 39 H 0.96706 * 114.00123 * 179.97438 * 10 9 8 40 40 H 1.09003 * 113.76958 * 336.35227 * 11 7 6 41 41 H 1.08995 * 113.76997 * 107.74583 * 11 7 6 42 42 H 0.96999 * 120.00068 * 180.02562 * 16 15 13 43 43 H 1.09004 * 113.76989 * 221.15542 * 21 12 11 44 44 H 1.08998 * 113.77677 * 89.75204 * 21 12 11 45 45 H 1.09006 * 109.50599 * 297.54711 * 23 22 2 46 46 H 1.09002 * 109.50599 * 57.67341 * 23 22 2 47 47 H 1.09001 * 109.50593 * 296.91656 * 24 23 22 48 48 H 1.09002 * 109.54560 * 176.80309 * 24 23 22 49 49 H 1.09002 * 109.50445 * 298.73330 * 26 25 24 50 50 H 1.09000 * 109.54429 * 178.63124 * 26 25 24 51 51 H 1.09004 * 109.50512 * 302.32360 * 27 22 2 52 52 H 1.08999 * 109.51044 * 62.40636 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 1.3370 -0.7705 -2.2224 6 7 3.2543 -1.2789 -1.2286 7 6 3.6991 -2.0630 -2.3834 8 6 3.8584 -1.2208 -3.6507 9 6 4.8708 -0.1023 -3.3959 10 8 5.1045 0.6143 -4.6098 11 6 2.8978 -3.3599 -2.5978 12 7 4.2010 -3.9969 -2.8820 13 6 4.5956 -5.0959 -3.5973 14 1 5.6422 -5.3563 -3.6536 15 6 3.6504 -5.8754 -4.2498 16 7 2.3748 -5.5579 -4.1815 17 14 4.1887 -7.3742 -5.2262 18 1 4.8810 -8.3297 -4.3246 19 1 2.9977 -8.0303 -5.8229 20 1 5.1155 -6.9537 -6.3076 21 6 4.9059 -2.9722 -2.0877 22 7 2.0196 -0.6924 1.1994 23 6 1.6206 -2.1074 1.1907 24 6 2.2006 -2.8033 2.4249 25 8 1.7569 -2.1229 3.6020 26 6 2.1288 -0.7425 3.6439 27 6 1.5482 -0.0259 2.4220 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 -0.8901 31 1 1.6766 1.9563 0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 3.8393 -1.1689 -0.4628 35 1 4.2126 -1.8529 -4.4650 36 1 2.8963 -0.7853 -3.9209 37 1 4.4773 0.5791 -2.6416 38 1 5.8075 -0.5337 -3.0426 39 1 5.7375 1.3402 -4.5225 40 1 2.4145 -3.7321 -1.6944 41 1 2.2277 -3.3254 -3.4567 42 1 1.7143 -6.1028 -4.6372 43 1 5.8361 -2.6285 -2.5402 44 1 5.0138 -3.2301 -1.0342 45 1 0.5331 -2.1790 1.2098 46 1 2.0019 -2.5875 0.2894 47 1 3.2893 -2.7785 2.3787 48 1 1.8608 -3.8386 2.4531 49 1 3.2155 -0.6579 3.6332 50 1 1.7373 -0.2868 4.5534 51 1 1.8765 1.0135 2.4196 52 1 0.4595 -0.0635 2.4604 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755336623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:22:04 Heat of formation + Delta-G solvation = -85.431562 kcal Electronic energy + Delta-G solvation = -33144.227091 eV Core-core repulsion = 28952.134331 eV Total energy + Delta-G solvation = -4192.092760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.03132 -40.65230 -39.39474 -37.68984 -37.36534 -35.26554 -33.71714 -32.97864 -32.21312 -31.69479 -29.08328 -28.35265 -27.55913 -26.85784 -25.79488 -24.74483 -23.83274 -23.16504 -21.68498 -20.18725 -20.11775 -18.86106 -18.58266 -18.35080 -17.31280 -17.08425 -16.87316 -16.73297 -16.17877 -16.12205 -15.89932 -15.72580 -15.62716 -15.40197 -15.29573 -14.97475 -14.82983 -14.45294 -13.95660 -13.60274 -13.49246 -13.31478 -13.26187 -13.12324 -12.99539 -12.88758 -12.79534 -12.70153 -12.62588 -12.43425 -12.34060 -12.25347 -12.05097 -12.00958 -11.71707 -11.41615 -11.37057 -10.95766 -10.87608 -10.68021 -10.46115 -9.96920 -9.48644 -8.97300 -7.91333 -5.27175 1.43474 1.47815 1.53763 1.64299 2.13694 2.48889 2.60120 2.98301 3.15354 3.26796 3.34405 3.57144 3.69137 3.87097 3.93698 3.99262 4.04694 4.14294 4.16186 4.27767 4.30889 4.34513 4.38346 4.50165 4.55302 4.59708 4.64150 4.65858 4.70644 4.76203 4.78112 4.83911 4.89558 4.93304 4.93744 5.04405 5.05838 5.16667 5.19507 5.21931 5.26902 5.27981 5.49711 5.69155 5.78687 5.87886 5.88888 6.22551 6.70129 6.86425 6.96078 7.38628 7.58423 8.50410 9.24826 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.011070 B = 0.004015 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2528.640850 B = 6971.810919 C = 8397.249645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 C -0.131 4.131 4 C 0.523 3.477 5 O -0.576 6.576 6 N -0.691 5.691 7 C 0.153 3.847 8 C -0.092 4.092 9 C 0.096 3.904 10 O -0.595 6.595 11 C 0.177 3.823 12 N -0.631 5.631 13 C -0.232 4.232 14 H 0.092 0.908 15 C -0.067 4.067 16 N -0.956 5.956 17 Si 0.980 3.020 18 H -0.272 1.272 19 H -0.299 1.299 20 H -0.275 1.275 21 C 0.129 3.871 22 N -0.512 5.512 23 C 0.009 3.991 24 C 0.073 3.927 25 O -0.404 6.404 26 C 0.060 3.940 27 C 0.012 3.988 28 H 0.091 0.909 29 H 0.037 0.963 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.418 0.582 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.397 0.603 40 H 0.009 0.991 41 H 0.026 0.974 42 H 0.246 0.754 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.034 0.966 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.095 0.905 49 H 0.069 0.931 50 H 0.118 0.882 51 H 0.119 0.881 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 18.069 17.578 25.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.005 3.995 3 C -0.189 4.189 4 C 0.309 3.691 5 O -0.454 6.454 6 N -0.343 5.343 7 C 0.066 3.934 8 C -0.131 4.131 9 C 0.019 3.981 10 O -0.404 6.404 11 C 0.050 3.950 12 N -0.358 5.358 13 C -0.360 4.360 14 H 0.110 0.890 15 C -0.260 4.260 16 N -0.604 5.604 17 Si 0.807 3.193 18 H -0.198 1.198 19 H -0.225 1.225 20 H -0.201 1.201 21 C 0.004 3.996 22 N -0.239 5.239 23 C -0.119 4.119 24 C -0.004 4.004 25 O -0.323 6.323 26 C -0.016 4.016 27 C -0.115 4.115 28 H 0.109 0.891 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.115 0.885 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.256 0.744 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.247 0.753 40 H 0.026 0.974 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.052 0.948 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.113 0.887 49 H 0.087 0.913 50 H 0.136 0.864 51 H 0.137 0.863 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.100 17.235 16.599 24.129 hybrid contribution -0.666 -1.045 -0.756 1.452 sum 2.433 16.191 15.843 22.783 Atomic orbital electron populations 1.22239 0.94705 1.01818 1.03573 1.21282 0.94343 0.96542 0.87368 1.21862 1.02851 0.90323 1.03845 1.20870 0.81231 0.77810 0.89166 1.90735 1.57821 1.60240 1.36653 1.45867 1.17030 1.51839 1.19594 1.22235 0.96344 0.88709 0.86140 1.21212 0.99435 0.96383 0.96070 1.21963 0.97607 0.92575 0.86001 1.86476 1.68133 1.50896 1.34886 1.22246 0.89419 0.87433 0.95909 1.45991 1.03962 1.29629 1.56200 1.19377 0.93164 1.01126 1.22372 0.89006 1.25684 0.95307 1.02578 1.02468 1.70069 1.00837 1.41283 1.48239 0.85140 0.76488 0.79041 0.78604 1.19775 1.22520 1.20065 1.22993 0.94570 0.86024 0.95994 1.62520 1.58458 1.01258 1.01618 1.22866 0.98781 0.90017 1.00283 1.22566 0.99365 0.95795 0.82657 1.87973 1.79083 1.24126 1.41098 1.22892 1.00405 0.80410 0.97935 1.23050 0.98949 1.00666 0.88882 0.89055 0.94393 0.91911 0.88537 0.90095 0.92059 0.74385 0.93293 0.93050 0.92314 0.91889 0.75282 0.97378 0.95586 0.94497 0.91125 0.91756 0.94788 0.91220 0.91183 0.88731 0.91258 0.86401 0.86286 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.82 7.31 71.98 0.53 -3.30 16 2 C 0.10 2.11 0.63 2.78 0.00 2.11 16 3 C -0.13 -1.95 8.23 71.98 0.59 -1.36 16 4 C 0.52 16.33 5.08 87.66 0.45 16.78 16 5 O -0.58 -24.19 14.33 -3.05 -0.04 -24.23 16 6 N -0.69 -20.02 3.62 -427.53 -1.55 -21.56 16 7 C 0.15 5.80 0.66 5.36 0.00 5.80 16 8 C -0.09 -3.65 4.84 30.59 0.15 -3.50 16 9 C 0.10 2.72 6.80 71.98 0.49 3.20 16 10 O -0.60 -17.05 13.66 -148.98 -2.03 -19.08 16 11 C 0.18 9.02 6.34 86.44 0.55 9.57 16 12 N -0.63 -32.48 3.54 -715.41 -2.54 -35.02 16 13 C -0.23 -13.12 10.70 84.03 0.90 -12.22 16 14 H 0.09 4.84 7.83 -2.91 -0.02 4.81 16 15 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 16 N -0.96 -60.88 11.39 21.65 0.25 -60.63 16 17 Si 0.98 46.93 29.55 68.60 2.03 48.96 16 18 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 19 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 20 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 21 C 0.13 4.84 8.05 86.49 0.70 5.53 16 22 N -0.51 -9.50 3.88 -849.92 -3.30 -12.80 16 23 C 0.01 0.22 4.90 86.31 0.42 0.64 16 24 C 0.07 1.56 7.01 72.01 0.50 2.07 16 25 O -0.40 -8.38 10.83 -148.98 -1.61 -10.00 16 26 C 0.06 0.79 7.01 72.01 0.50 1.30 16 27 C 0.01 0.15 4.87 86.31 0.42 0.57 16 28 H 0.09 1.55 6.46 -2.39 -0.02 1.54 16 29 H 0.04 1.06 6.54 -2.39 -0.02 1.04 16 30 H 0.06 1.62 7.87 -2.38 -0.02 1.60 16 31 H 0.10 0.89 6.35 -2.38 -0.02 0.88 16 32 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.42 9.42 8.15 -92.71 -0.76 8.67 16 35 H 0.05 2.31 8.03 -2.38 -0.02 2.29 16 36 H 0.05 2.32 6.72 -2.39 -0.02 2.30 16 37 H 0.06 1.42 7.90 -2.39 -0.02 1.40 16 38 H 0.06 1.54 7.18 -2.39 -0.02 1.52 16 39 H 0.40 6.43 9.12 -74.05 -0.68 5.76 16 40 H 0.01 0.45 7.87 -2.39 -0.02 0.43 16 41 H 0.03 1.59 7.12 -2.39 -0.02 1.58 16 42 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 43 H 0.07 2.39 7.28 -2.39 -0.02 2.37 16 44 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.03 0.92 6.52 -2.38 -0.02 0.90 16 46 H 0.07 2.12 5.94 -2.39 -0.01 2.10 16 47 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 48 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 50 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 51 H 0.12 0.92 6.19 -2.38 -0.01 0.91 16 52 H 0.04 0.67 6.44 -2.39 -0.02 0.65 16 Total: -1.00 -80.76 394.85 -2.62 -83.38 By element: Atomic # 1 Polarization: 27.75 SS G_CDS: -0.49 Total: 27.26 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 6.67 Total: 23.72 kcal Atomic # 7 Polarization: -122.87 SS G_CDS: -7.13 Total: -130.01 kcal Atomic # 8 Polarization: -49.62 SS G_CDS: -3.69 Total: -53.31 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -80.76 -2.62 -83.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755336623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.049 kcal (2) G-P(sol) polarization free energy of solvation -80.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds