Wall clock time and date at job start Wed Apr 1 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34224 * 117.00541 * 2 1 4 4 O 1.20825 * 119.99557 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00334 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47071 * 180.02562 * 5 3 2 7 7 N 1.46895 * 109.47091 * 180.02562 * 6 5 3 8 8 C 1.46898 * 110.99792 * 314.29666 * 7 6 5 9 9 C 1.53698 * 109.25856 * 172.60905 * 8 7 6 10 10 N 1.47086 * 108.27469 * 54.08235 * 9 8 7 11 11 C 1.34779 * 120.87869 * 128.75259 * 10 9 8 12 12 O 1.21588 * 119.99996 * 185.11037 * 11 10 9 13 13 N 1.34781 * 120.00198 * 4.83913 * 11 10 9 14 14 C 1.46494 * 120.00058 * 175.29985 * 13 11 10 15 15 C 1.53001 * 109.46939 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46955 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46926 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00559 * 359.97438 * 17 16 15 19 19 C 1.37887 * 119.99723 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47345 * 89.99317 * 21 19 17 23 23 H 1.48495 * 109.46897 * 210.00081 * 21 19 17 24 24 H 1.48510 * 109.46774 * 329.99911 * 21 19 17 25 25 C 1.47067 * 118.23644 * 308.48636 * 10 9 8 26 26 H 1.09004 * 109.62905 * 291.55155 * 25 10 9 27 27 C 1.53000 * 109.62875 * 171.16869 * 25 10 9 28 28 C 1.46902 * 111.00043 * 190.00038 * 7 6 5 29 29 H 1.09008 * 109.47231 * 60.00043 * 1 2 3 30 30 H 1.09004 * 109.47892 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47197 * 300.00486 * 1 2 3 32 32 H 1.08996 * 109.47033 * 60.00028 * 5 3 2 33 33 H 1.09000 * 109.47220 * 299.99669 * 5 3 2 34 34 H 1.08995 * 109.47369 * 59.99478 * 6 5 3 35 35 H 1.09000 * 109.46686 * 299.99821 * 6 5 3 36 36 H 1.08999 * 109.49704 * 292.71118 * 8 7 6 37 37 H 1.08998 * 109.49601 * 52.76443 * 8 7 6 38 38 H 1.08995 * 109.79793 * 294.42383 * 9 8 7 39 39 H 1.08996 * 109.70274 * 173.68544 * 9 8 7 40 40 H 0.96998 * 119.99912 * 355.30796 * 13 11 10 41 41 H 1.08999 * 109.47503 * 299.99967 * 14 13 11 42 42 H 1.09003 * 109.46947 * 60.00012 * 14 13 11 43 43 H 1.08999 * 109.47385 * 299.99928 * 15 14 13 44 44 H 1.08997 * 109.47076 * 60.00544 * 15 14 13 45 45 H 1.09004 * 109.47031 * 300.00496 * 16 15 14 46 46 H 1.09003 * 109.47098 * 59.99866 * 16 15 14 47 47 H 0.97000 * 119.99621 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.47538 * 65.35301 * 27 25 10 49 49 H 1.09003 * 109.47147 * 185.35299 * 27 25 10 50 50 H 1.09001 * 109.47274 * 305.34676 * 27 25 10 51 51 H 1.08996 * 109.49631 * 67.28778 * 28 7 6 52 52 H 1.09001 * 109.51324 * 307.21772 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4671 2.8188 0.0011 8 6 6.0429 1.8895 0.9823 9 6 7.5713 1.8654 0.8215 10 7 8.0662 3.2477 0.9100 11 6 9.0692 3.5709 1.7503 12 8 9.4036 4.7327 1.8794 13 7 9.6979 2.6067 2.4515 14 6 10.8541 2.9435 3.2857 15 6 11.3767 1.6777 3.9680 16 6 12.5839 2.0295 4.8398 17 6 13.0990 0.7826 5.5113 18 1 12.6137 -0.1658 5.3344 19 6 14.1893 0.8528 6.3524 20 7 14.7800 2.0078 6.5682 21 14 14.8283 -0.6929 7.1843 22 1 15.8502 -1.3345 6.3187 23 1 15.4388 -0.3359 8.4900 24 1 13.7035 -1.6370 7.4053 25 6 7.4415 4.2666 0.0530 26 1 7.6947 4.0735 -0.9895 27 6 7.9439 5.6547 0.4551 28 6 5.9222 4.1950 0.2397 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7804 -0.8891 33 1 3.9557 0.7808 0.8908 34 1 3.6101 3.2359 0.8910 35 1 3.6108 3.2362 -0.8889 36 1 5.7854 2.2180 1.9892 37 1 5.6446 0.8891 0.8131 38 1 7.8339 1.4440 -0.1488 39 1 8.0150 1.2661 1.6165 40 1 9.3849 1.6899 2.4038 41 1 11.6398 3.3706 2.6625 42 1 10.5567 3.6687 4.0432 43 1 10.5913 1.2501 4.5912 44 1 11.6743 0.9529 3.2102 45 1 13.3695 2.4574 4.2169 46 1 12.2860 2.7542 5.5976 47 1 15.5472 2.0571 7.1596 48 1 9.0115 5.7288 0.2483 49 1 7.4096 6.4140 -0.1160 50 1 7.7683 5.8104 1.5196 51 1 5.6664 4.4915 1.2569 52 1 5.4367 4.8669 -0.4681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089265239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:51 Heat of formation + Delta-G solvation = -95.512985 kcal Electronic energy + Delta-G solvation = -29842.160058 eV Core-core repulsion = 25649.630134 eV Total energy + Delta-G solvation = -4192.529923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.06589 -40.63656 -38.62312 -37.05796 -35.83169 -35.07354 -33.73377 -32.59984 -31.73980 -30.92023 -28.77351 -28.07023 -26.53096 -25.88430 -24.17299 -23.37153 -22.35425 -21.47998 -20.72363 -20.51955 -19.39114 -18.32822 -17.64442 -17.19736 -17.14411 -16.51078 -16.13920 -15.81344 -15.54566 -15.29399 -15.24475 -14.74461 -14.65095 -14.38173 -14.27216 -13.80684 -13.64358 -13.49866 -13.07828 -12.86963 -12.67008 -12.46245 -12.35501 -12.21442 -12.02043 -11.85383 -11.76830 -11.65810 -11.54748 -11.32639 -11.26963 -11.18567 -10.96564 -10.90129 -10.69003 -10.58241 -9.85387 -9.55466 -9.17592 -9.08248 -8.99128 -8.75707 -8.41920 -8.36970 -6.01641 -4.04692 1.68723 2.13179 2.64376 3.30580 3.31753 3.37002 3.39561 3.45370 3.96142 4.10497 4.33544 4.43730 4.44628 4.51158 4.60589 4.64277 4.68487 4.82437 4.86235 4.91321 4.98619 5.03143 5.10209 5.28268 5.28865 5.34119 5.38752 5.42514 5.49207 5.62056 5.70795 5.73959 5.82411 5.86235 6.15936 6.19406 6.28790 6.44146 6.49636 6.54141 6.63090 6.71783 6.85276 7.03424 7.05663 7.21558 7.64128 7.77096 7.97272 8.09590 8.38261 8.77404 9.01974 9.59360 11.09585 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.001831 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.889331 B =15289.507951 C =17129.310247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.508 6.508 5 C -0.120 4.120 6 C 0.067 3.933 7 N -0.536 5.536 8 C 0.028 3.972 9 C 0.117 3.883 10 N -0.634 5.634 11 C 0.703 3.297 12 O -0.583 6.583 13 N -0.744 5.744 14 C 0.135 3.865 15 C -0.120 4.120 16 C 0.024 3.976 17 C -0.523 4.523 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.169 3.831 26 H 0.076 0.924 27 C -0.136 4.136 28 C 0.046 3.954 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.118 0.882 33 H 0.110 0.890 34 H 0.046 0.954 35 H 0.088 0.912 36 H 0.043 0.957 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.390 0.610 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 48 H 0.079 0.921 49 H 0.041 0.959 50 H 0.070 0.930 51 H 0.043 0.957 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.481 -2.462 -17.362 32.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.395 6.395 5 C -0.157 4.157 6 C -0.061 4.061 7 N -0.260 5.260 8 C -0.100 4.100 9 C -0.007 4.007 10 N -0.373 5.373 11 C 0.405 3.595 12 O -0.461 6.461 13 N -0.400 5.400 14 C 0.012 3.988 15 C -0.158 4.158 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.065 3.935 26 H 0.094 0.906 27 C -0.193 4.193 28 C -0.083 4.083 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.226 0.774 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.059 0.941 50 H 0.089 0.911 51 H 0.061 0.939 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -27.114 -1.353 -17.609 32.359 hybrid contribution -0.328 -1.148 1.308 1.771 sum -27.442 -2.501 -16.301 32.016 Atomic orbital electron populations 1.23295 0.76011 1.03888 1.02661 1.86505 1.23713 1.33392 1.84037 1.23722 0.92115 0.81379 0.72215 1.90695 1.67355 1.36332 1.45129 1.21566 0.87384 1.00024 1.06774 1.21896 0.87363 0.93900 1.02893 1.62027 1.07006 1.07262 1.49740 1.22785 0.95275 0.97745 0.94238 1.21780 0.92826 0.83384 1.02699 1.47406 1.37408 1.09244 1.43284 1.15989 0.79368 0.85203 0.78902 1.90961 1.68675 1.17010 1.69456 1.45675 1.34160 1.10140 1.50032 1.21493 0.85456 0.99035 0.92848 1.21884 1.00186 0.94804 0.98926 1.19028 0.91151 0.97120 0.94072 1.21204 1.13487 0.94331 1.27066 0.92669 1.25032 0.96734 0.96011 0.96690 1.69965 1.21860 1.24065 1.37308 0.86585 0.79055 0.83359 0.78923 1.20666 1.21219 1.19925 1.21132 0.89973 0.88785 0.93657 0.90624 1.22164 1.02351 0.92510 1.02294 1.22634 0.95921 0.88952 1.00776 0.91780 0.87917 0.91814 0.86373 0.87155 0.93602 0.89328 0.93881 0.88898 0.90423 0.89813 0.77398 0.92041 0.91974 0.92879 0.92814 0.96245 0.96253 0.92939 0.90194 0.94054 0.91067 0.93906 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.23 16 2 O -0.36 -2.51 10.56 -39.24 -0.41 -2.92 16 3 C 0.46 3.51 7.96 36.00 0.29 3.80 16 4 O -0.51 -5.33 15.73 -18.75 -0.29 -5.62 16 5 C -0.12 -0.62 5.06 -27.88 -0.14 -0.76 16 6 C 0.07 0.45 4.56 -3.82 -0.02 0.43 16 7 N -0.54 -3.94 4.78 -234.03 -1.12 -5.06 16 8 C 0.03 0.19 5.06 -3.46 -0.02 0.18 16 9 C 0.12 0.95 6.57 -3.36 -0.02 0.93 16 10 N -0.63 -7.26 3.00 -170.33 -0.51 -7.78 16 11 C 0.70 10.66 8.22 -86.91 -0.71 9.95 16 12 O -0.58 -10.74 11.85 5.29 0.06 -10.68 16 13 N -0.74 -10.82 5.47 -65.23 -0.36 -11.18 16 14 C 0.13 2.39 5.68 -4.04 -0.02 2.37 16 15 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 16 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.53 9.11 -34.44 -0.31 -14.85 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 21 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 25 C 0.17 1.74 3.65 -67.50 -0.25 1.50 16 26 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 27 C -0.14 -1.62 7.61 37.16 0.28 -1.34 16 28 C 0.05 0.39 4.87 -3.70 -0.02 0.37 16 29 H 0.06 0.30 8.13 -51.92 -0.42 -0.13 16 30 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 32 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.11 0.44 6.18 -51.93 -0.32 0.12 16 34 H 0.05 0.36 8.04 -51.93 -0.42 -0.05 16 35 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.42 5.73 -51.93 -0.30 0.12 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.61 5.73 -51.93 -0.30 0.31 16 40 H 0.39 4.62 6.01 -40.82 -0.25 4.38 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 48 H 0.08 1.15 6.70 -51.93 -0.35 0.80 16 49 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 1.02 6.85 -51.93 -0.36 0.66 16 51 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.09 0.64 8.11 -51.93 -0.42 0.22 16 LS Contribution 409.75 15.07 6.17 6.17 Total: -1.00 -34.34 409.75 -10.00 -44.35 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -9.01 Total: -1.00 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.25 Total: 3.32 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: -1.25 Total: -50.01 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.65 Total: -19.22 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.34 -10.00 -44.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089265239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.166 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds