Wall clock time and date at job start Wed Apr 1 2020 01:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34224 * 117.00541 * 2 1 4 4 O 1.20825 * 119.99557 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00334 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.47071 * 180.02562 * 5 3 2 7 7 N 1.46895 * 109.47091 * 180.02562 * 6 5 3 8 8 C 1.46898 * 110.99792 * 314.29666 * 7 6 5 9 9 C 1.53698 * 109.25856 * 172.60905 * 8 7 6 10 10 N 1.47086 * 108.27469 * 54.08235 * 9 8 7 11 11 C 1.34779 * 120.87869 * 128.75259 * 10 9 8 12 12 O 1.21588 * 119.99996 * 185.11037 * 11 10 9 13 13 N 1.34781 * 120.00198 * 4.83913 * 11 10 9 14 14 C 1.46494 * 120.00058 * 175.29985 * 13 11 10 15 15 C 1.53001 * 109.46939 * 180.02562 * 14 13 11 16 16 C 1.53005 * 109.46955 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.46926 * 180.02562 * 16 15 14 18 18 H 1.07995 * 120.00559 * 359.97438 * 17 16 15 19 19 C 1.37887 * 119.99723 * 180.02562 * 17 16 15 20 20 N 1.31510 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99994 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47345 * 89.99317 * 21 19 17 23 23 H 1.48495 * 109.46897 * 210.00081 * 21 19 17 24 24 H 1.48510 * 109.46774 * 329.99911 * 21 19 17 25 25 C 1.47067 * 118.23644 * 308.48636 * 10 9 8 26 26 H 1.09004 * 109.62905 * 291.55155 * 25 10 9 27 27 C 1.53000 * 109.62875 * 171.16869 * 25 10 9 28 28 C 1.46902 * 111.00043 * 190.00038 * 7 6 5 29 29 H 1.09008 * 109.47231 * 60.00043 * 1 2 3 30 30 H 1.09004 * 109.47892 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47197 * 300.00486 * 1 2 3 32 32 H 1.08996 * 109.47033 * 60.00028 * 5 3 2 33 33 H 1.09000 * 109.47220 * 299.99669 * 5 3 2 34 34 H 1.08995 * 109.47369 * 59.99478 * 6 5 3 35 35 H 1.09000 * 109.46686 * 299.99821 * 6 5 3 36 36 H 1.08999 * 109.49704 * 292.71118 * 8 7 6 37 37 H 1.08998 * 109.49601 * 52.76443 * 8 7 6 38 38 H 1.08995 * 109.79793 * 294.42383 * 9 8 7 39 39 H 1.08996 * 109.70274 * 173.68544 * 9 8 7 40 40 H 0.96998 * 119.99912 * 355.30796 * 13 11 10 41 41 H 1.08999 * 109.47503 * 299.99967 * 14 13 11 42 42 H 1.09003 * 109.46947 * 60.00012 * 14 13 11 43 43 H 1.08999 * 109.47385 * 299.99928 * 15 14 13 44 44 H 1.08997 * 109.47076 * 60.00544 * 15 14 13 45 45 H 1.09004 * 109.47031 * 300.00496 * 16 15 14 46 46 H 1.09003 * 109.47098 * 59.99866 * 16 15 14 47 47 H 0.97000 * 119.99621 * 180.02562 * 20 19 17 48 48 H 1.08996 * 109.47538 * 65.35301 * 27 25 10 49 49 H 1.09003 * 109.47147 * 185.35299 * 27 25 10 50 50 H 1.09001 * 109.47274 * 305.34676 * 27 25 10 51 51 H 1.08996 * 109.49631 * 67.28778 * 28 7 6 52 52 H 1.09001 * 109.51324 * 307.21772 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2747 0.0006 6 6 4.0002 2.7420 0.0011 7 7 5.4671 2.8188 0.0011 8 6 6.0429 1.8895 0.9823 9 6 7.5713 1.8654 0.8215 10 7 8.0662 3.2477 0.9100 11 6 9.0692 3.5709 1.7503 12 8 9.4036 4.7327 1.8794 13 7 9.6979 2.6067 2.4515 14 6 10.8541 2.9435 3.2857 15 6 11.3767 1.6777 3.9680 16 6 12.5839 2.0295 4.8398 17 6 13.0990 0.7826 5.5113 18 1 12.6137 -0.1658 5.3344 19 6 14.1893 0.8528 6.3524 20 7 14.7800 2.0078 6.5682 21 14 14.8283 -0.6929 7.1843 22 1 15.8502 -1.3345 6.3187 23 1 15.4388 -0.3359 8.4900 24 1 13.7035 -1.6370 7.4053 25 6 7.4415 4.2666 0.0530 26 1 7.6947 4.0735 -0.9895 27 6 7.9439 5.6547 0.4551 28 6 5.9222 4.1950 0.2397 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 3.9564 0.7804 -0.8891 33 1 3.9557 0.7808 0.8908 34 1 3.6101 3.2359 0.8910 35 1 3.6108 3.2362 -0.8889 36 1 5.7854 2.2180 1.9892 37 1 5.6446 0.8891 0.8131 38 1 7.8339 1.4440 -0.1488 39 1 8.0150 1.2661 1.6165 40 1 9.3849 1.6899 2.4038 41 1 11.6398 3.3706 2.6625 42 1 10.5567 3.6687 4.0432 43 1 10.5913 1.2501 4.5912 44 1 11.6743 0.9529 3.2102 45 1 13.3695 2.4574 4.2169 46 1 12.2860 2.7542 5.5976 47 1 15.5472 2.0571 7.1596 48 1 9.0115 5.7288 0.2483 49 1 7.4096 6.4140 -0.1160 50 1 7.7683 5.8104 1.5196 51 1 5.6664 4.4915 1.2569 52 1 5.4367 4.8669 -0.4681 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089265239.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:51 Heat of formation + Delta-G solvation = -118.925906 kcal Electronic energy + Delta-G solvation = -29843.175318 eV Core-core repulsion = 25649.630134 eV Total energy + Delta-G solvation = -4193.545184 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78838 -41.47143 -39.46117 -37.66651 -37.14446 -36.04684 -35.39742 -33.92809 -32.47088 -32.32738 -29.61320 -28.62790 -28.21538 -26.63216 -25.04520 -24.80193 -23.20827 -22.42431 -22.23959 -21.20574 -20.50458 -18.95027 -18.62903 -18.41973 -17.74318 -17.69722 -17.24107 -16.96978 -16.49706 -16.22389 -16.04682 -15.90764 -15.73872 -15.67033 -15.10586 -14.87841 -14.40301 -14.27903 -14.22376 -13.88448 -13.73253 -13.47132 -13.43293 -13.39304 -13.19556 -12.85056 -12.75338 -12.68668 -12.52186 -12.39259 -12.38571 -12.21087 -12.07310 -11.86015 -11.79276 -11.64606 -11.55569 -11.49095 -11.19025 -10.53875 -10.35669 -10.10971 -9.65577 -9.27685 -8.17865 -6.29326 1.14039 1.42829 1.44317 1.54952 1.59037 1.71119 2.16241 2.43084 2.82901 2.95510 3.15925 3.60987 3.76533 3.87919 3.94253 4.01851 4.13450 4.21848 4.24294 4.25330 4.29393 4.30502 4.32384 4.36069 4.48998 4.57658 4.63131 4.70475 4.71662 4.75715 4.82797 4.86233 4.90884 4.97882 5.00148 5.01336 5.18126 5.20681 5.35211 5.37370 5.50144 5.59266 5.68452 5.72831 5.81282 5.85868 5.93840 6.03772 6.24108 6.68268 6.87836 7.01491 7.40154 7.61672 8.94168 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013230 B = 0.001831 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2115.889331 B =15289.507951 C =17129.310247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.463 3.537 4 O -0.544 6.544 5 C -0.112 4.112 6 C 0.072 3.928 7 N -0.531 5.531 8 C 0.029 3.971 9 C 0.110 3.890 10 N -0.629 5.629 11 C 0.697 3.303 12 O -0.623 6.623 13 N -0.734 5.734 14 C 0.151 3.849 15 C -0.099 4.099 16 C 0.023 3.977 17 C -0.540 4.540 18 H 0.068 0.932 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.968 3.032 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.260 1.260 25 C 0.167 3.833 26 H 0.089 0.911 27 C -0.126 4.126 28 C 0.053 3.947 29 H 0.062 0.938 30 H 0.130 0.870 31 H 0.058 0.942 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.030 0.970 35 H 0.085 0.915 36 H 0.031 0.969 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.407 0.593 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.066 0.934 44 H 0.069 0.931 45 H -0.008 1.008 46 H -0.009 1.009 47 H 0.262 0.738 48 H 0.051 0.949 49 H 0.065 0.935 50 H 0.042 0.958 51 H 0.026 0.974 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.972 -5.590 -18.491 34.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.434 6.434 5 C -0.149 4.149 6 C -0.056 4.056 7 N -0.255 5.255 8 C -0.099 4.099 9 C -0.012 4.012 10 N -0.367 5.367 11 C 0.399 3.601 12 O -0.504 6.504 13 N -0.392 5.392 14 C 0.027 3.973 15 C -0.137 4.137 16 C -0.015 4.015 17 C -0.578 4.578 18 H 0.086 0.914 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.198 1.198 23 H -0.212 1.212 24 H -0.184 1.184 25 C 0.064 3.936 26 H 0.107 0.893 27 C -0.184 4.184 28 C -0.076 4.076 29 H 0.080 0.920 30 H 0.148 0.852 31 H 0.077 0.923 32 H 0.158 0.842 33 H 0.146 0.854 34 H 0.048 0.952 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.144 0.856 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.245 0.755 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.011 0.989 46 H 0.009 0.991 47 H 0.071 0.929 48 H 0.070 0.930 49 H 0.084 0.916 50 H 0.061 0.939 51 H 0.045 0.955 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -28.659 -4.545 -18.774 34.561 hybrid contribution 0.070 -0.139 1.616 1.623 sum -28.590 -4.684 -17.159 33.671 Atomic orbital electron populations 1.23520 0.74987 1.05628 1.02387 1.86501 1.24834 1.32999 1.83664 1.24180 0.92975 0.81003 0.71053 1.90686 1.68307 1.37462 1.46978 1.21585 0.85723 0.99040 1.08563 1.21818 0.86687 0.95073 1.02016 1.62042 1.07354 1.06449 1.49662 1.22868 0.94354 0.99193 0.93518 1.22092 0.93695 0.81356 1.04058 1.47489 1.36096 1.11107 1.42019 1.16191 0.80056 0.84568 0.79330 1.90956 1.70026 1.18708 1.70720 1.45328 1.33255 1.11032 1.49574 1.21030 0.86165 0.97699 0.92434 1.21577 0.98022 0.95614 0.98507 1.18946 0.92814 0.95848 0.93843 1.21685 1.13694 0.95378 1.27073 0.91418 1.26034 0.97115 0.99492 0.97523 1.70118 1.22502 1.26648 1.38238 0.85409 0.78735 0.79113 0.77544 1.19817 1.21169 1.18352 1.21231 0.91035 0.87514 0.93859 0.89314 1.21969 1.00931 0.94716 1.00797 1.22516 0.94511 0.90271 1.00298 0.91952 0.85212 0.92272 0.84217 0.85388 0.95154 0.89695 0.95056 0.85644 0.88722 0.88799 0.75488 0.93597 0.93845 0.91495 0.91272 0.98949 0.99066 0.92879 0.92988 0.91649 0.93896 0.95543 0.87938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 113.37 1.20 1.42 16 2 O -0.36 -4.35 10.56 -51.36 -0.54 -4.90 16 3 C 0.46 6.26 7.96 71.24 0.57 6.82 16 4 O -0.54 -11.09 15.73 21.97 0.35 -10.75 16 5 C -0.11 -0.83 5.06 29.85 0.15 -0.67 16 6 C 0.07 0.82 4.56 86.31 0.39 1.21 16 7 N -0.53 -6.44 4.78 -894.32 -4.27 -10.71 16 8 C 0.03 0.31 5.06 86.54 0.44 0.74 16 9 C 0.11 1.46 6.57 86.50 0.57 2.03 16 10 N -0.63 -13.63 3.00 -811.07 -2.44 -16.07 16 11 C 0.70 21.09 8.22 179.05 1.47 22.56 16 12 O -0.62 -23.90 11.85 -3.99 -0.05 -23.95 16 13 N -0.73 -20.79 5.47 -478.54 -2.62 -23.40 16 14 C 0.15 5.44 5.68 86.38 0.49 5.94 16 15 C -0.10 -3.80 5.27 30.60 0.16 -3.64 16 16 C 0.02 1.21 4.97 29.85 0.15 1.36 16 17 C -0.54 -30.00 9.11 25.60 0.23 -29.77 16 18 H 0.07 3.51 7.74 -2.91 -0.02 3.48 16 19 C 0.00 -0.23 5.46 84.66 0.46 0.23 16 20 N -0.93 -57.13 13.29 21.45 0.28 -56.84 16 21 Si 0.97 43.56 29.54 68.60 2.03 45.58 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 24 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 25 C 0.17 3.28 3.65 44.96 0.16 3.44 16 26 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 27 C -0.13 -3.09 7.61 71.98 0.55 -2.54 16 28 C 0.05 0.83 4.87 86.38 0.42 1.25 16 29 H 0.06 0.52 8.13 -2.38 -0.02 0.50 16 30 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 32 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.13 0.52 6.18 -2.39 -0.01 0.51 16 34 H 0.03 0.45 8.04 -2.39 -0.02 0.43 16 35 H 0.08 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 37 H 0.13 0.54 5.73 -2.39 -0.01 0.53 16 38 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 1.05 5.73 -2.39 -0.01 1.04 16 40 H 0.41 8.72 6.01 -92.71 -0.56 8.17 16 41 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 46 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 47 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 48 H 0.05 1.56 6.70 -2.39 -0.02 1.54 16 49 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 50 H 0.04 1.28 6.85 -2.39 -0.02 1.27 16 51 H 0.03 0.51 8.14 -2.39 -0.02 0.49 16 52 H 0.10 1.31 8.11 -2.39 -0.02 1.29 16 Total: -1.00 -77.32 409.75 0.50 -76.81 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.35 Total: 13.84 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 7.41 Total: 10.38 kcal Atomic # 7 Polarization: -97.98 SS G_CDS: -9.04 Total: -107.02 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -0.24 Total: -39.59 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Total: -77.32 0.50 -76.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089265239.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.114 kcal (2) G-P(sol) polarization free energy of solvation -77.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds