Wall clock time and date at job start Wed Apr 1 2020 01:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 116.99618 * 2 1 4 4 O 1.20824 * 120.00373 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99484 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46603 * 180.02562 * 5 3 2 7 7 N 1.46903 * 109.46671 * 180.02562 * 6 5 3 8 8 C 1.46898 * 111.00193 * 45.69492 * 7 6 5 9 9 C 1.52780 * 109.42064 * 187.11140 * 8 7 6 10 10 N 1.47073 * 108.77154 * 306.42603 * 9 8 7 11 11 C 1.34780 * 120.88595 * 231.12482 * 10 9 8 12 12 O 1.21590 * 119.99846 * 185.31817 * 11 10 9 13 13 N 1.34770 * 119.99523 * 5.31164 * 11 10 9 14 14 C 1.46510 * 119.99589 * 175.15874 * 13 11 10 15 15 C 1.52995 * 109.46853 * 179.72641 * 14 13 11 16 16 C 1.52999 * 109.46977 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47224 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00109 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00099 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00128 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00066 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46972 * 90.00105 * 21 19 17 23 23 H 1.48495 * 109.47297 * 210.00305 * 21 19 17 24 24 H 1.48503 * 109.47149 * 330.00209 * 21 19 17 25 25 C 1.47085 * 118.23315 * 50.85297 * 10 9 8 26 26 H 1.09000 * 109.63268 * 68.99479 * 25 10 9 27 27 C 1.53006 * 109.62816 * 189.38054 * 25 10 9 28 28 C 1.46904 * 110.99864 * 170.00166 * 7 6 5 29 29 H 1.08997 * 109.47324 * 59.99958 * 1 2 3 30 30 H 1.09009 * 109.47476 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47526 * 299.99812 * 1 2 3 32 32 H 1.09000 * 109.47031 * 60.00503 * 5 3 2 33 33 H 1.08998 * 109.47387 * 300.00168 * 5 3 2 34 34 H 1.09000 * 109.47187 * 60.00389 * 6 5 3 35 35 H 1.08998 * 109.47214 * 300.00064 * 6 5 3 36 36 H 1.08994 * 109.49614 * 307.21498 * 8 7 6 37 37 H 1.09004 * 109.48886 * 67.26959 * 8 7 6 38 38 H 1.09003 * 109.55438 * 186.61091 * 9 8 7 39 39 H 1.09002 * 109.45717 * 66.18835 * 9 8 7 40 40 H 0.96994 * 120.00314 * 354.88608 * 13 11 10 41 41 H 1.08993 * 109.47018 * 299.72549 * 14 13 11 42 42 H 1.08996 * 109.47169 * 59.72588 * 14 13 11 43 43 H 1.08999 * 109.47498 * 300.00116 * 15 14 13 44 44 H 1.08996 * 109.47277 * 60.00013 * 15 14 13 45 45 H 1.08998 * 109.47764 * 300.00309 * 16 15 14 46 46 H 1.09007 * 109.47127 * 60.00482 * 16 15 14 47 47 H 0.97003 * 120.00140 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.47053 * 51.63914 * 27 25 10 49 49 H 1.08996 * 109.47222 * 171.63881 * 27 25 10 50 50 H 1.09003 * 109.46771 * 291.64241 * 27 25 10 51 51 H 1.08999 * 109.49152 * 52.78054 * 28 7 6 52 52 H 1.09004 * 109.51111 * 292.71552 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0000 2.7421 0.0011 7 7 5.4670 2.8190 0.0011 8 6 6.0429 1.8903 -0.9807 9 6 7.5630 1.8688 -0.8289 10 7 8.0660 3.2486 -0.9076 11 6 9.0691 3.5724 -1.7476 12 8 9.5378 4.6942 -1.7310 13 7 9.5527 2.6526 -2.6058 14 6 10.5686 3.0325 -3.5907 15 6 10.9474 1.8105 -4.4298 16 6 12.0079 2.2074 -5.4588 17 6 12.3815 1.0036 -6.2850 18 1 11.9094 0.0509 -6.0954 19 6 13.3259 1.1185 -7.2828 20 7 13.6516 0.0681 -8.0041 21 14 14.1419 2.7664 -7.6113 22 1 15.3667 2.8867 -6.7803 23 1 14.5070 2.8605 -9.0476 24 1 13.2006 3.8623 -7.2671 25 6 7.4413 4.2670 -0.0498 26 1 7.6945 4.0732 0.9926 27 6 7.9436 5.6554 -0.4511 28 6 5.9221 4.1954 -0.2366 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9563 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6100 3.2360 0.8911 35 1 3.6106 3.2364 -0.8889 36 1 5.6449 0.8898 -0.8120 37 1 5.7849 2.2194 -1.9874 38 1 8.0012 1.2730 -1.6296 39 1 7.8253 1.4379 0.1374 40 1 9.2311 1.7383 -2.5688 41 1 10.1705 3.8109 -4.2415 42 1 11.4526 3.4072 -3.0748 43 1 11.3455 1.0320 -3.7790 44 1 10.0634 1.4358 -4.9457 45 1 11.6095 2.9857 -6.1096 46 1 12.8921 2.5823 -4.9432 47 1 14.3158 0.1490 -8.7065 48 1 7.8169 5.7912 -1.5252 49 1 7.3726 6.4162 0.0811 50 1 8.9991 5.7479 -0.1951 51 1 5.4364 4.8664 0.4719 52 1 5.6662 4.4930 -1.2535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089265240.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:55 Heat of formation + Delta-G solvation = -92.895236 kcal Electronic energy + Delta-G solvation = -29943.518401 eV Core-core repulsion = 25751.101992 eV Total energy + Delta-G solvation = -4192.416409 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07927 -40.68608 -38.67710 -37.06415 -35.92577 -35.13208 -33.79253 -32.61659 -31.77234 -31.18816 -28.87905 -28.10693 -26.92329 -25.93152 -24.18546 -23.28182 -22.31789 -21.48199 -20.71771 -20.49932 -19.39267 -18.34727 -17.75536 -17.20513 -17.15169 -16.79370 -16.31787 -15.83884 -15.57391 -15.33052 -15.29475 -14.85065 -14.70979 -14.34686 -14.18432 -13.80857 -13.69497 -13.48192 -13.15490 -12.89692 -12.71572 -12.67088 -12.46902 -12.32273 -12.05402 -11.95664 -11.91949 -11.75675 -11.61496 -11.32683 -11.28846 -11.24259 -11.02939 -10.96668 -10.88771 -10.09924 -9.89044 -9.73255 -9.27492 -9.22834 -9.03457 -8.83116 -8.55844 -8.47646 -6.06719 -4.05392 1.68720 2.13054 2.58444 3.24728 3.31375 3.38908 3.43341 3.43375 3.88681 4.09581 4.32321 4.43441 4.44286 4.50272 4.60448 4.61436 4.68953 4.79546 4.84586 4.89591 4.94950 5.02859 5.07165 5.26596 5.27299 5.27538 5.36348 5.39566 5.45844 5.54355 5.59408 5.68616 5.69499 5.86308 6.03938 6.09832 6.22877 6.34202 6.44704 6.46899 6.47490 6.64073 6.72515 6.84874 6.96830 7.21549 7.23198 7.36590 7.75339 8.02605 8.49676 8.70225 8.96967 9.55655 11.06454 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.001905 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.757074 B =14690.806090 C =16323.320150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.463 3.537 4 O -0.508 6.508 5 C -0.120 4.120 6 C 0.067 3.933 7 N -0.536 5.536 8 C 0.027 3.973 9 C 0.117 3.883 10 N -0.633 5.633 11 C 0.705 3.295 12 O -0.584 6.584 13 N -0.744 5.744 14 C 0.133 3.867 15 C -0.113 4.113 16 C -0.011 4.011 17 C -0.522 4.522 18 H 0.072 0.928 19 C 0.066 3.934 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.264 1.264 25 C 0.169 3.831 26 H 0.077 0.923 27 C -0.137 4.137 28 C 0.046 3.954 29 H 0.063 0.937 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.111 0.889 33 H 0.118 0.882 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.094 0.906 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.392 0.608 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.059 0.941 45 H 0.019 0.981 46 H 0.015 0.985 47 H 0.263 0.737 48 H 0.065 0.935 49 H 0.043 0.957 50 H 0.084 0.916 51 H 0.088 0.912 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.096 1.842 20.895 32.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.306 3.694 4 O -0.395 6.395 5 C -0.158 4.158 6 C -0.060 4.060 7 N -0.260 5.260 8 C -0.101 4.101 9 C -0.007 4.007 10 N -0.373 5.373 11 C 0.407 3.593 12 O -0.462 6.462 13 N -0.400 5.400 14 C 0.009 3.991 15 C -0.151 4.151 16 C -0.049 4.049 17 C -0.560 4.560 18 H 0.090 0.910 19 C -0.135 4.135 20 N -0.542 5.542 21 Si 0.707 3.293 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.189 1.189 25 C 0.065 3.935 26 H 0.095 0.905 27 C -0.195 4.195 28 C -0.083 4.083 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.082 0.918 32 H 0.129 0.871 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.064 0.936 36 H 0.112 0.888 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.228 0.772 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.037 0.963 46 H 0.033 0.967 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.062 0.938 50 H 0.102 0.898 51 H 0.107 0.893 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -24.688 2.781 21.177 32.645 hybrid contribution -0.271 0.403 -1.122 1.223 sum -24.959 3.184 20.055 32.176 Atomic orbital electron populations 1.23296 0.75994 1.03905 1.02658 1.86508 1.23726 1.33365 1.84022 1.23716 0.92108 0.81388 0.72213 1.90694 1.67358 1.36334 1.45145 1.21567 0.87418 0.99984 1.06795 1.21898 0.87296 0.93946 1.02901 1.62029 1.07077 1.07210 1.49709 1.22630 0.95316 0.97876 0.94297 1.21605 0.92950 0.83409 1.02782 1.47413 1.37093 1.09434 1.43323 1.15947 0.79750 0.84702 0.78931 1.90945 1.62328 1.20179 1.72763 1.45615 1.45253 1.12204 1.36963 1.21497 0.89752 0.98672 0.89142 1.21699 1.00333 0.95457 0.97579 1.19500 0.93652 0.97730 0.93999 1.21097 1.22861 0.95933 1.16088 0.91030 1.25027 0.96361 0.96483 0.95615 1.69913 1.32961 1.29434 1.21894 0.86776 0.80185 0.84977 0.77364 1.20233 1.21389 1.18891 1.21122 0.89898 0.88696 0.93812 0.90540 1.22148 1.02533 0.92641 1.02184 1.22635 0.95845 0.89041 1.00787 0.91803 0.87904 0.91787 0.87120 0.86376 0.89313 0.93588 0.88770 0.93876 0.89768 0.90422 0.77205 0.92147 0.91893 0.92174 0.92257 0.96317 0.96693 0.92710 0.91642 0.93833 0.89751 0.89347 0.93933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.56 101.05 1.07 1.23 16 2 O -0.36 -2.51 10.57 -39.24 -0.41 -2.93 16 3 C 0.46 3.51 7.96 36.01 0.29 3.79 16 4 O -0.51 -5.32 15.73 -18.75 -0.29 -5.61 16 5 C -0.12 -0.61 5.06 -27.88 -0.14 -0.75 16 6 C 0.07 0.44 4.56 -3.82 -0.02 0.43 16 7 N -0.54 -3.82 4.78 -234.61 -1.12 -4.95 16 8 C 0.03 0.18 5.03 -3.94 -0.02 0.16 16 9 C 0.12 0.91 6.57 -3.84 -0.03 0.89 16 10 N -0.63 -7.00 3.02 -170.89 -0.52 -7.51 16 11 C 0.70 10.26 8.08 -86.92 -0.70 9.56 16 12 O -0.58 -10.36 12.07 5.29 0.06 -10.29 16 13 N -0.74 -10.31 5.47 -65.23 -0.36 -10.66 16 14 C 0.13 2.20 5.68 -4.04 -0.02 2.18 16 15 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 16 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 17 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 18 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 19 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 21 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 25 C 0.17 1.68 3.66 -67.49 -0.25 1.44 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 C -0.14 -1.58 7.63 37.16 0.28 -1.29 16 28 C 0.05 0.38 4.87 -3.70 -0.02 0.36 16 29 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 30 H 0.10 0.23 8.14 -51.92 -0.42 -0.19 16 31 H 0.06 0.30 8.13 -51.93 -0.42 -0.12 16 32 H 0.11 0.44 6.18 -51.93 -0.32 0.11 16 33 H 0.12 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.05 0.36 8.04 -51.93 -0.42 -0.06 16 36 H 0.09 0.41 5.73 -51.93 -0.30 0.11 16 37 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.59 5.63 -51.93 -0.29 0.30 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.39 4.43 5.97 -40.82 -0.24 4.19 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.02 0.44 7.20 -51.93 -0.37 0.06 16 46 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.06 0.90 6.96 -51.93 -0.36 0.54 16 49 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 50 H 0.08 1.16 6.60 -51.93 -0.34 0.82 16 51 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 52 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 406.10 15.07 6.12 6.12 Total: -1.00 -34.79 406.10 -9.62 -44.41 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -8.97 Total: -1.02 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: -0.24 Total: 2.27 kcal Atomic # 7 Polarization: -48.77 SS G_CDS: -1.22 Total: -49.99 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.65 Total: -18.83 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.79 -9.62 -44.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089265240.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.484 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds