Wall clock time and date at job start Wed Apr 1 2020 01:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34224 * 116.99618 * 2 1 4 4 O 1.20824 * 120.00373 * 0.02562 * 3 2 1 5 5 C 1.50708 * 119.99484 * 179.97438 * 3 2 1 6 6 C 1.53006 * 109.46603 * 180.02562 * 5 3 2 7 7 N 1.46903 * 109.46671 * 180.02562 * 6 5 3 8 8 C 1.46898 * 111.00193 * 45.69492 * 7 6 5 9 9 C 1.52780 * 109.42064 * 187.11140 * 8 7 6 10 10 N 1.47073 * 108.77154 * 306.42603 * 9 8 7 11 11 C 1.34780 * 120.88595 * 231.12482 * 10 9 8 12 12 O 1.21590 * 119.99846 * 185.31817 * 11 10 9 13 13 N 1.34770 * 119.99523 * 5.31164 * 11 10 9 14 14 C 1.46510 * 119.99589 * 175.15874 * 13 11 10 15 15 C 1.52995 * 109.46853 * 179.72641 * 14 13 11 16 16 C 1.52999 * 109.46977 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.47224 * 179.97438 * 16 15 14 18 18 H 1.08002 * 120.00109 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00099 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00128 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00066 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46972 * 90.00105 * 21 19 17 23 23 H 1.48495 * 109.47297 * 210.00305 * 21 19 17 24 24 H 1.48503 * 109.47149 * 330.00209 * 21 19 17 25 25 C 1.47085 * 118.23315 * 50.85297 * 10 9 8 26 26 H 1.09000 * 109.63268 * 68.99479 * 25 10 9 27 27 C 1.53006 * 109.62816 * 189.38054 * 25 10 9 28 28 C 1.46904 * 110.99864 * 170.00166 * 7 6 5 29 29 H 1.08997 * 109.47324 * 59.99958 * 1 2 3 30 30 H 1.09009 * 109.47476 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47526 * 299.99812 * 1 2 3 32 32 H 1.09000 * 109.47031 * 60.00503 * 5 3 2 33 33 H 1.08998 * 109.47387 * 300.00168 * 5 3 2 34 34 H 1.09000 * 109.47187 * 60.00389 * 6 5 3 35 35 H 1.08998 * 109.47214 * 300.00064 * 6 5 3 36 36 H 1.08994 * 109.49614 * 307.21498 * 8 7 6 37 37 H 1.09004 * 109.48886 * 67.26959 * 8 7 6 38 38 H 1.09003 * 109.55438 * 186.61091 * 9 8 7 39 39 H 1.09002 * 109.45717 * 66.18835 * 9 8 7 40 40 H 0.96994 * 120.00314 * 354.88608 * 13 11 10 41 41 H 1.08993 * 109.47018 * 299.72549 * 14 13 11 42 42 H 1.08996 * 109.47169 * 59.72588 * 14 13 11 43 43 H 1.08999 * 109.47498 * 300.00116 * 15 14 13 44 44 H 1.08996 * 109.47277 * 60.00013 * 15 14 13 45 45 H 1.08998 * 109.47764 * 300.00309 * 16 15 14 46 46 H 1.09007 * 109.47127 * 60.00482 * 16 15 14 47 47 H 0.97003 * 120.00140 * 179.97438 * 20 19 17 48 48 H 1.09000 * 109.47053 * 51.63914 * 27 25 10 49 49 H 1.08996 * 109.47222 * 171.63881 * 27 25 10 50 50 H 1.09003 * 109.46771 * 291.64241 * 27 25 10 51 51 H 1.08999 * 109.49152 * 52.78054 * 28 7 6 52 52 H 1.09004 * 109.51111 * 292.71552 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0000 2.7421 0.0011 7 7 5.4670 2.8190 0.0011 8 6 6.0429 1.8903 -0.9807 9 6 7.5630 1.8688 -0.8289 10 7 8.0660 3.2486 -0.9076 11 6 9.0691 3.5724 -1.7476 12 8 9.5378 4.6942 -1.7310 13 7 9.5527 2.6526 -2.6058 14 6 10.5686 3.0325 -3.5907 15 6 10.9474 1.8105 -4.4298 16 6 12.0079 2.2074 -5.4588 17 6 12.3815 1.0036 -6.2850 18 1 11.9094 0.0509 -6.0954 19 6 13.3259 1.1185 -7.2828 20 7 13.6516 0.0681 -8.0041 21 14 14.1419 2.7664 -7.6113 22 1 15.3667 2.8867 -6.7803 23 1 14.5070 2.8605 -9.0476 24 1 13.2006 3.8623 -7.2671 25 6 7.4413 4.2670 -0.0498 26 1 7.6945 4.0732 0.9926 27 6 7.9436 5.6554 -0.4511 28 6 5.9221 4.1954 -0.2366 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 3.9563 0.7806 -0.8892 33 1 3.9557 0.7809 0.8908 34 1 3.6100 3.2360 0.8911 35 1 3.6106 3.2364 -0.8889 36 1 5.6449 0.8898 -0.8120 37 1 5.7849 2.2194 -1.9874 38 1 8.0012 1.2730 -1.6296 39 1 7.8253 1.4379 0.1374 40 1 9.2311 1.7383 -2.5688 41 1 10.1705 3.8109 -4.2415 42 1 11.4526 3.4072 -3.0748 43 1 11.3455 1.0320 -3.7790 44 1 10.0634 1.4358 -4.9457 45 1 11.6095 2.9857 -6.1096 46 1 12.8921 2.5823 -4.9432 47 1 14.3158 0.1490 -8.7065 48 1 7.8169 5.7912 -1.5252 49 1 7.3726 6.4162 0.0811 50 1 8.9991 5.7479 -0.1951 51 1 5.4364 4.8664 0.4719 52 1 5.6662 4.4930 -1.2535 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089265240.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:54 Heat of formation + Delta-G solvation = -117.183742 kcal Electronic energy + Delta-G solvation = -29944.571630 eV Core-core repulsion = 25751.101992 eV Total energy + Delta-G solvation = -4193.469638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.79596 -41.47321 -39.47904 -37.67197 -37.17089 -36.04795 -35.36496 -34.00811 -32.69706 -32.35092 -29.74080 -28.69203 -28.42737 -26.63623 -24.80480 -24.78565 -23.14633 -22.41239 -22.15794 -21.20758 -20.46402 -19.08409 -18.85137 -18.53041 -17.76388 -17.69949 -17.31469 -16.92429 -16.38924 -16.18278 -16.06178 -15.89955 -15.80762 -15.57919 -15.20180 -14.78838 -14.74941 -14.41233 -14.29146 -13.91203 -13.79987 -13.59069 -13.42289 -13.37160 -13.18192 -12.86601 -12.73123 -12.71830 -12.63836 -12.38317 -12.26701 -12.07627 -11.88063 -11.85050 -11.79885 -11.72212 -11.57619 -11.55826 -11.31240 -10.75180 -10.41145 -10.11104 -9.65896 -9.28132 -8.28485 -6.32003 1.13682 1.37445 1.39085 1.50751 1.58892 1.70835 2.16296 2.37034 2.82771 2.93435 3.07368 3.60599 3.76518 3.88934 3.93761 4.01474 4.08914 4.20351 4.22657 4.23767 4.28919 4.30175 4.32186 4.35015 4.48601 4.52517 4.61713 4.70410 4.70896 4.75516 4.82244 4.86434 4.89868 4.91984 4.93015 4.99819 5.05424 5.20991 5.33014 5.37063 5.43710 5.57498 5.57763 5.66987 5.67301 5.80997 5.93378 6.03336 6.28619 6.67886 6.75799 7.00148 7.32789 7.60952 8.87731 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013630 B = 0.001905 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.757074 B =14690.806090 C =16323.320150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.364 6.364 3 C 0.463 3.537 4 O -0.544 6.544 5 C -0.112 4.112 6 C 0.072 3.928 7 N -0.531 5.531 8 C 0.028 3.972 9 C 0.110 3.890 10 N -0.629 5.629 11 C 0.699 3.301 12 O -0.621 6.621 13 N -0.737 5.737 14 C 0.148 3.852 15 C -0.098 4.098 16 C -0.012 4.012 17 C -0.529 4.529 18 H 0.039 0.961 19 C 0.005 3.995 20 N -0.949 5.949 21 Si 0.946 3.054 22 H -0.268 1.268 23 H -0.285 1.285 24 H -0.249 1.249 25 C 0.167 3.833 26 H 0.088 0.912 27 C -0.128 4.128 28 C 0.052 3.948 29 H 0.058 0.942 30 H 0.129 0.871 31 H 0.062 0.938 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.125 0.875 37 H 0.031 0.969 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.406 0.594 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.020 0.980 46 H 0.019 0.981 47 H 0.266 0.734 48 H 0.037 0.963 49 H 0.066 0.934 50 H 0.058 0.942 51 H 0.103 0.897 52 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.085 1.726 22.431 34.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.280 6.280 3 C 0.308 3.692 4 O -0.434 6.434 5 C -0.150 4.150 6 C -0.056 4.056 7 N -0.255 5.255 8 C -0.100 4.100 9 C -0.012 4.012 10 N -0.368 5.368 11 C 0.400 3.600 12 O -0.502 6.502 13 N -0.395 5.395 14 C 0.024 3.976 15 C -0.136 4.136 16 C -0.050 4.050 17 C -0.567 4.567 18 H 0.057 0.943 19 C -0.192 4.192 20 N -0.590 5.590 21 Si 0.769 3.231 22 H -0.193 1.193 23 H -0.211 1.211 24 H -0.172 1.172 25 C 0.064 3.936 26 H 0.106 0.894 27 C -0.186 4.186 28 C -0.077 4.077 29 H 0.077 0.923 30 H 0.148 0.852 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.103 0.897 35 H 0.049 0.951 36 H 0.143 0.857 37 H 0.050 0.950 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.244 0.756 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.038 0.962 46 H 0.037 0.963 47 H 0.075 0.925 48 H 0.057 0.943 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.121 0.879 52 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -25.724 2.616 22.749 34.440 hybrid contribution -0.054 0.343 -1.554 1.593 sum -25.778 2.959 21.195 33.504 Atomic orbital electron populations 1.23519 0.74979 1.05626 1.02397 1.86505 1.24846 1.33012 1.83661 1.24179 0.92976 0.81003 0.71056 1.90684 1.68302 1.37441 1.46976 1.21590 0.85733 0.99102 1.08530 1.21817 0.86692 0.95012 1.02034 1.62042 1.07359 1.06510 1.49635 1.22707 0.94471 0.99239 0.93597 1.21884 0.93746 0.81571 1.04007 1.47500 1.35926 1.11117 1.42215 1.16130 0.80325 0.84149 0.79353 1.90936 1.63702 1.21701 1.73885 1.45349 1.44757 1.12962 1.36403 1.21101 0.90105 0.97247 0.89187 1.21462 0.99108 0.96278 0.96776 1.19464 0.95263 0.95678 0.94602 1.21462 1.22273 0.96405 1.16585 0.94263 1.25960 0.97283 1.00379 0.95546 1.70055 1.34125 1.31917 1.22923 0.85722 0.79497 0.80472 0.77367 1.19287 1.21055 1.17237 1.21214 0.90876 0.87568 0.93964 0.89441 1.21964 1.01361 0.94640 1.00597 1.22528 0.94535 0.90227 1.00360 0.92271 0.85239 0.91917 0.85438 0.84257 0.89658 0.95128 0.85736 0.95022 0.88873 0.88883 0.75593 0.93006 0.92792 0.91683 0.91769 0.96184 0.96256 0.92543 0.94338 0.91513 0.92324 0.87911 0.95457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.43 16 2 O -0.36 -4.46 10.57 -51.36 -0.54 -5.00 16 3 C 0.46 6.32 7.96 71.24 0.57 6.89 16 4 O -0.54 -11.10 15.73 21.97 0.35 -10.76 16 5 C -0.11 -0.84 5.06 29.85 0.15 -0.69 16 6 C 0.07 0.81 4.56 86.30 0.39 1.21 16 7 N -0.53 -6.26 4.78 -896.17 -4.28 -10.54 16 8 C 0.03 0.29 5.03 86.23 0.43 0.72 16 9 C 0.11 1.42 6.57 86.20 0.57 1.99 16 10 N -0.63 -12.97 3.02 -812.82 -2.45 -15.43 16 11 C 0.70 19.83 8.08 179.06 1.45 21.28 16 12 O -0.62 -22.23 12.07 -4.00 -0.05 -22.27 16 13 N -0.74 -19.46 5.47 -478.54 -2.62 -22.08 16 14 C 0.15 4.76 5.68 86.38 0.49 5.25 16 15 C -0.10 -3.52 5.27 30.59 0.16 -3.36 16 16 C -0.01 -0.55 4.04 29.85 0.12 -0.43 16 17 C -0.53 -29.87 9.66 25.60 0.25 -29.62 16 18 H 0.04 2.40 7.99 -2.91 -0.02 2.37 16 19 C 0.01 0.30 5.47 84.65 0.46 0.77 16 20 N -0.95 -59.06 13.96 21.45 0.30 -58.76 16 21 Si 0.95 44.42 27.47 68.60 1.88 46.30 16 22 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 23 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 25 C 0.17 3.11 3.66 44.96 0.16 3.27 16 26 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 27 C -0.13 -2.92 7.63 71.98 0.55 -2.37 16 28 C 0.05 0.78 4.87 86.38 0.42 1.20 16 29 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 30 H 0.13 0.32 8.14 -2.38 -0.02 0.30 16 31 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 32 H 0.13 0.55 6.18 -2.39 -0.01 0.54 16 33 H 0.14 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.09 1.04 8.10 -2.39 -0.02 1.03 16 35 H 0.03 0.45 8.04 -2.39 -0.02 0.43 16 36 H 0.12 0.56 5.73 -2.39 -0.01 0.54 16 37 H 0.03 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.09 1.03 5.63 -2.39 -0.01 1.02 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.41 8.34 5.97 -92.71 -0.55 7.79 16 41 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.02 0.90 7.20 -2.39 -0.02 0.89 16 46 H 0.02 0.86 7.57 -2.38 -0.02 0.84 16 47 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.04 1.08 6.96 -2.39 -0.02 1.06 16 49 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 50 H 0.06 1.64 6.60 -2.39 -0.02 1.63 16 51 H 0.10 1.24 8.11 -2.39 -0.02 1.22 16 52 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -77.07 406.10 0.26 -76.82 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.30 Total: 14.18 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 7.37 Total: 7.54 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -9.05 Total: -106.80 kcal Atomic # 8 Polarization: -37.78 SS G_CDS: -0.25 Total: -38.03 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.88 Total: 46.30 kcal Total: -77.07 0.26 -76.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089265240.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.367 kcal (2) G-P(sol) polarization free energy of solvation -77.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds