Wall clock time and date at job start Wed Apr 1 2020 01:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.51551 * 2 1 4 4 C 1.53234 * 109.49647 * 239.93158 * 2 1 3 5 5 N 1.47078 * 108.52194 * 186.21120 * 4 2 1 6 6 C 1.34783 * 120.87965 * 231.16032 * 5 4 2 7 7 O 1.21513 * 119.99405 * 180.02562 * 6 5 4 8 8 O 1.34632 * 120.00066 * 0.02562 * 6 5 4 9 9 C 1.45201 * 117.00028 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47000 * 59.99768 * 9 8 6 11 11 C 1.52992 * 109.47383 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.46936 * 300.00168 * 9 8 6 13 13 C 1.47077 * 118.23885 * 51.18522 * 5 4 2 14 14 H 1.09000 * 109.63159 * 189.10802 * 13 5 4 15 15 C 1.52994 * 109.79117 * 68.61806 * 13 5 4 16 16 C 1.53238 * 108.51952 * 308.81457 * 13 5 4 17 17 N 1.46895 * 109.34198 * 53.82876 * 16 13 5 18 18 C 1.46895 * 111.00567 * 172.74659 * 17 16 13 19 19 C 1.50700 * 109.47051 * 66.04495 * 18 17 16 20 20 O 1.21292 * 119.99931 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.37090 * 119.99722 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00228 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99996 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47163 * 60.00180 * 26 24 22 28 28 H 1.48505 * 109.47234 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47290 * 300.00176 * 26 24 22 30 30 H 1.09001 * 109.47667 * 299.94100 * 1 2 3 31 31 H 1.09009 * 109.47042 * 59.93581 * 1 2 3 32 32 H 1.08996 * 109.47110 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.62989 * 66.50198 * 4 2 1 34 34 H 1.09005 * 109.63012 * 305.91902 * 4 2 1 35 35 H 1.08994 * 109.47120 * 60.00321 * 10 9 8 36 36 H 1.09006 * 109.47160 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47374 * 300.00033 * 10 9 8 38 38 H 1.09000 * 109.47641 * 59.99588 * 11 9 8 39 39 H 1.08998 * 109.47542 * 180.02562 * 11 9 8 40 40 H 1.09007 * 109.46998 * 300.00149 * 11 9 8 41 41 H 1.08999 * 109.47389 * 59.99997 * 12 9 8 42 42 H 1.09006 * 109.47087 * 179.97438 * 12 9 8 43 43 H 1.08998 * 109.47356 * 299.99408 * 12 9 8 44 44 H 1.09004 * 109.47528 * 300.87901 * 15 13 5 45 45 H 1.09000 * 109.47293 * 60.87108 * 15 13 5 46 46 H 1.09000 * 109.47461 * 180.87441 * 15 13 5 47 47 H 1.08995 * 109.49452 * 293.86733 * 16 13 5 48 48 H 1.09008 * 109.49487 * 173.78823 * 16 13 5 49 49 H 1.09004 * 109.47210 * 306.04718 * 18 17 16 50 50 H 1.08997 * 109.47605 * 186.05078 * 18 17 16 51 51 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 52 52 H 0.97000 * 120.00310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0414 -0.7237 -1.2501 5 7 3.5042 -0.8431 -1.1552 6 6 4.2978 -0.4495 -2.1711 7 8 5.5045 -0.5558 -2.0756 8 8 3.7534 0.0616 -3.2914 9 6 4.6685 0.4652 -4.3440 10 6 5.4872 -0.7444 -4.7995 11 6 3.8723 1.0178 -5.5278 12 6 5.6104 1.5480 -3.8136 13 6 4.0782 -1.4041 0.0773 14 1 5.1611 -1.2804 0.0663 15 6 3.7317 -2.8907 0.1803 16 6 3.4866 -0.6535 1.2752 17 7 2.0202 -0.6937 1.1985 18 6 1.4139 -0.1358 2.4146 19 6 1.7280 1.3355 2.5030 20 8 2.3914 1.8670 1.6378 21 7 1.2719 2.0607 3.5436 22 6 1.5582 3.3989 3.6243 23 1 2.1488 3.8722 2.8539 24 6 1.0875 4.1467 4.6967 25 7 0.3684 3.5709 5.6339 26 14 1.4770 5.9703 4.8063 27 1 0.9274 6.6663 3.6151 28 1 0.8645 6.5342 6.0360 29 1 2.9490 6.1601 4.8552 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7777 -0.1503 -2.1388 34 1 1.5958 -1.7170 -1.3062 35 1 4.8163 -1.5158 -5.1774 36 1 6.1745 -0.4414 -5.5895 37 1 6.0545 -1.1377 -3.9560 38 1 3.2892 1.8796 -5.2031 39 1 4.5591 1.3203 -6.3182 40 1 3.2009 0.2467 -5.9058 41 1 6.1777 1.1547 -2.9701 42 1 6.2976 1.8507 -4.6037 43 1 5.0272 2.4098 -3.4891 44 1 2.6484 -3.0120 0.1841 45 1 4.1536 -3.4220 -0.6728 46 1 4.1461 -3.2974 1.1027 47 1 3.8235 0.3829 1.2575 48 1 3.8156 -1.1275 2.2001 49 1 1.8172 -0.6466 3.2890 50 1 0.3334 -0.2751 2.3788 51 1 0.7381 1.6364 4.2335 52 1 0.0395 4.0929 6.3824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093258929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:11 Heat of formation + Delta-G solvation = -104.113064 kcal Electronic energy + Delta-G solvation = -32453.391552 eV Core-core repulsion = 28260.488701 eV Total energy + Delta-G solvation = -4192.902851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.88491 -39.65916 -37.95753 -36.58357 -34.74532 -34.11337 -33.73594 -32.74494 -31.35894 -29.89304 -27.77196 -27.51298 -27.42895 -26.03665 -25.15867 -23.66929 -23.06356 -21.10786 -19.98470 -19.31292 -18.69680 -18.02207 -17.56052 -16.69272 -16.16404 -15.92196 -15.65891 -15.31728 -14.71106 -14.65075 -14.46690 -14.42720 -14.03352 -13.88757 -13.60749 -13.49425 -13.16844 -12.91374 -12.59838 -12.41874 -12.25114 -12.11579 -11.98104 -11.95887 -11.82497 -11.71897 -11.55552 -11.45184 -11.43097 -11.24970 -11.20584 -11.13250 -10.82804 -10.52932 -10.45041 -10.42135 -10.36251 -10.27787 -9.86634 -9.49679 -9.25807 -8.60356 -8.03440 -7.41994 -6.48650 -3.90020 2.21488 2.97485 3.14188 3.21273 3.25542 3.79128 3.86923 4.11948 4.24081 4.64095 4.68212 4.82475 4.87394 5.05673 5.08140 5.14369 5.24170 5.33916 5.34766 5.42575 5.45636 5.51008 5.56840 5.57425 5.67634 5.69155 5.77842 5.79011 5.82772 5.88215 5.88794 5.96081 6.00275 6.01473 6.10537 6.18289 6.20216 6.28343 6.36161 6.38062 6.49181 6.53663 6.64427 6.76773 7.25135 7.39591 7.47950 7.56100 7.97530 8.46792 8.52491 9.09887 9.45696 9.96424 10.67729 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003096 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.348147 B = 9042.575554 C =10071.919768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.044 3.956 3 H 0.098 0.902 4 C 0.125 3.875 5 N -0.585 5.585 6 C 0.656 3.344 7 O -0.576 6.576 8 O -0.363 6.363 9 C 0.136 3.864 10 C -0.181 4.181 11 C -0.140 4.140 12 C -0.184 4.184 13 C 0.160 3.840 14 H 0.099 0.901 15 C -0.151 4.151 16 C 0.034 3.966 17 N -0.505 5.505 18 C 0.038 3.962 19 C 0.406 3.594 20 O -0.593 6.593 21 N -0.555 5.555 22 C -0.303 4.303 23 H 0.101 0.899 24 C 0.025 3.975 25 N -0.898 5.898 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.273 1.273 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.066 0.934 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.088 0.912 50 H 0.094 0.906 51 H 0.393 0.607 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -11.157 -15.388 19.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.065 4.065 3 H 0.116 0.884 4 C 0.002 3.998 5 N -0.324 5.324 6 C 0.411 3.589 7 O -0.466 6.466 8 O -0.277 6.277 9 C 0.099 3.901 10 C -0.238 4.238 11 C -0.197 4.197 12 C -0.241 4.241 13 C 0.058 3.942 14 H 0.117 0.883 15 C -0.210 4.210 16 C -0.095 4.095 17 N -0.229 5.229 18 C -0.094 4.094 19 C 0.192 3.808 20 O -0.480 6.480 21 N -0.191 5.191 22 C -0.433 4.433 23 H 0.119 0.881 24 C -0.177 4.177 25 N -0.539 5.539 26 Si 0.756 3.244 27 H -0.199 1.199 28 H -0.209 1.209 29 H -0.199 1.199 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.091 0.909 48 H 0.098 0.902 49 H 0.106 0.894 50 H 0.112 0.888 51 H 0.226 0.774 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.658 -11.216 -15.869 19.774 hybrid contribution 0.014 1.598 0.720 1.753 sum 3.672 -9.618 -15.149 18.316 Atomic orbital electron populations 1.21806 0.94291 1.01671 1.02239 1.22353 0.95225 0.99890 0.89010 0.88441 1.21866 0.78465 1.00796 0.98655 1.47070 1.06840 1.63868 1.14667 1.17932 0.84069 0.76687 0.80235 1.90851 1.13004 1.60979 1.81775 1.86294 1.41033 1.75340 1.25069 1.22013 0.88684 0.94672 0.84753 1.22499 1.00628 0.97510 1.03201 1.21847 1.00594 1.01755 0.95524 1.22513 0.99941 0.98268 1.03372 1.21317 0.98664 0.92971 0.81217 0.88290 1.22017 1.03219 0.94371 1.01358 1.22625 0.88442 1.01572 0.96849 1.62459 1.06231 1.52657 1.01524 1.22115 1.01196 0.92414 0.93628 1.21077 0.85853 0.89344 0.84560 1.90409 1.44159 1.72767 1.40645 1.42043 1.46240 1.09413 1.21358 1.19652 1.31519 0.84076 1.08007 0.88078 1.25275 0.96438 1.00616 0.95385 1.69597 1.35303 1.37386 1.11608 0.85937 0.78843 0.81960 0.77613 1.19879 1.20883 1.19883 0.91921 0.92448 0.92353 0.89431 0.91279 0.92379 0.91398 0.89374 0.91388 0.90343 0.91609 0.89331 0.91420 0.92033 0.91000 0.93303 0.91503 0.90855 0.90187 0.89412 0.88806 0.77398 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.71 37.16 0.32 -1.63 16 2 C 0.04 0.69 2.09 -67.59 -0.14 0.55 16 3 H 0.10 1.99 5.42 -51.92 -0.28 1.71 16 4 C 0.13 1.73 5.50 -3.61 -0.02 1.71 16 5 N -0.59 -8.84 2.71 -170.68 -0.46 -9.30 16 6 C 0.66 10.52 7.75 54.06 0.42 10.94 16 7 O -0.58 -10.03 11.33 -19.28 -0.22 -10.25 16 8 O -0.36 -5.25 8.57 -40.30 -0.35 -5.59 16 9 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 10 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 11 C -0.14 -1.25 8.85 37.15 0.33 -0.92 16 12 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 13 C 0.16 2.30 3.21 -67.50 -0.22 2.09 16 14 H 0.10 1.51 7.06 -51.93 -0.37 1.14 16 15 C -0.15 -1.77 9.22 37.15 0.34 -1.43 16 16 C 0.03 0.54 4.61 -3.70 -0.02 0.52 16 17 N -0.51 -7.80 4.19 -227.79 -0.95 -8.75 16 18 C 0.04 0.63 5.30 -4.98 -0.03 0.61 16 19 C 0.41 8.93 6.96 -10.98 -0.08 8.85 16 20 O -0.59 -14.81 11.22 5.55 0.06 -14.75 16 21 N -0.56 -13.50 5.29 -10.96 -0.06 -13.56 16 22 C -0.30 -8.22 9.68 -14.93 -0.14 -8.37 16 23 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 24 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 25 N -0.90 -23.95 13.05 55.50 0.72 -23.22 16 26 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 30 H 0.06 0.96 6.17 -51.93 -0.32 0.64 16 31 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 1.17 6.98 -51.93 -0.36 0.81 16 34 H 0.07 0.85 7.62 -51.93 -0.40 0.45 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.17 5.88 -51.93 -0.31 0.87 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 0.86 7.09 -51.93 -0.37 0.49 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 1.48 6.04 -51.93 -0.31 1.17 16 48 H 0.08 1.15 8.04 -51.92 -0.42 0.74 16 49 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 50 H 0.09 1.42 6.31 -51.93 -0.33 1.09 16 51 H 0.39 9.19 7.90 -40.82 -0.32 8.86 16 52 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -30.36 395.97 -7.78 -38.14 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: -8.67 Total: 14.16 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 1.20 Total: 11.37 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.75 Total: -54.83 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.50 Total: -30.59 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.36 -7.78 -38.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093258929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.975 kcal (2) G-P(sol) polarization free energy of solvation -30.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds