Wall clock time and date at job start Wed Apr 1 2020 01:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.51551 * 2 1 4 4 C 1.53234 * 109.49647 * 239.93158 * 2 1 3 5 5 N 1.47078 * 108.52194 * 186.21120 * 4 2 1 6 6 C 1.34783 * 120.87965 * 231.16032 * 5 4 2 7 7 O 1.21513 * 119.99405 * 180.02562 * 6 5 4 8 8 O 1.34632 * 120.00066 * 0.02562 * 6 5 4 9 9 C 1.45201 * 117.00028 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47000 * 59.99768 * 9 8 6 11 11 C 1.52992 * 109.47383 * 180.02562 * 9 8 6 12 12 C 1.53000 * 109.46936 * 300.00168 * 9 8 6 13 13 C 1.47077 * 118.23885 * 51.18522 * 5 4 2 14 14 H 1.09000 * 109.63159 * 189.10802 * 13 5 4 15 15 C 1.52994 * 109.79117 * 68.61806 * 13 5 4 16 16 C 1.53238 * 108.51952 * 308.81457 * 13 5 4 17 17 N 1.46895 * 109.34198 * 53.82876 * 16 13 5 18 18 C 1.46895 * 111.00567 * 172.74659 * 17 16 13 19 19 C 1.50700 * 109.47051 * 66.04495 * 18 17 16 20 20 O 1.21292 * 119.99931 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99961 * 180.02562 * 19 18 17 22 22 C 1.37090 * 119.99722 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00228 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99996 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99860 * 0.02562 * 24 22 21 26 26 Si 1.86795 * 120.00198 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.47163 * 60.00180 * 26 24 22 28 28 H 1.48505 * 109.47234 * 180.02562 * 26 24 22 29 29 H 1.48505 * 109.47290 * 300.00176 * 26 24 22 30 30 H 1.09001 * 109.47667 * 299.94100 * 1 2 3 31 31 H 1.09009 * 109.47042 * 59.93581 * 1 2 3 32 32 H 1.08996 * 109.47110 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.62989 * 66.50198 * 4 2 1 34 34 H 1.09005 * 109.63012 * 305.91902 * 4 2 1 35 35 H 1.08994 * 109.47120 * 60.00321 * 10 9 8 36 36 H 1.09006 * 109.47160 * 180.02562 * 10 9 8 37 37 H 1.08999 * 109.47374 * 300.00033 * 10 9 8 38 38 H 1.09000 * 109.47641 * 59.99588 * 11 9 8 39 39 H 1.08998 * 109.47542 * 180.02562 * 11 9 8 40 40 H 1.09007 * 109.46998 * 300.00149 * 11 9 8 41 41 H 1.08999 * 109.47389 * 59.99997 * 12 9 8 42 42 H 1.09006 * 109.47087 * 179.97438 * 12 9 8 43 43 H 1.08998 * 109.47356 * 299.99408 * 12 9 8 44 44 H 1.09004 * 109.47528 * 300.87901 * 15 13 5 45 45 H 1.09000 * 109.47293 * 60.87108 * 15 13 5 46 46 H 1.09000 * 109.47461 * 180.87441 * 15 13 5 47 47 H 1.08995 * 109.49452 * 293.86733 * 16 13 5 48 48 H 1.09008 * 109.49487 * 173.78823 * 16 13 5 49 49 H 1.09004 * 109.47210 * 306.04718 * 18 17 16 50 50 H 1.08997 * 109.47605 * 186.05078 * 18 17 16 51 51 H 0.96995 * 120.00015 * 359.72695 * 21 19 18 52 52 H 0.97000 * 120.00310 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0275 0.0000 4 6 2.0414 -0.7237 -1.2501 5 7 3.5042 -0.8431 -1.1552 6 6 4.2978 -0.4495 -2.1711 7 8 5.5045 -0.5558 -2.0756 8 8 3.7534 0.0616 -3.2914 9 6 4.6685 0.4652 -4.3440 10 6 5.4872 -0.7444 -4.7995 11 6 3.8723 1.0178 -5.5278 12 6 5.6104 1.5480 -3.8136 13 6 4.0782 -1.4041 0.0773 14 1 5.1611 -1.2804 0.0663 15 6 3.7317 -2.8907 0.1803 16 6 3.4866 -0.6535 1.2752 17 7 2.0202 -0.6937 1.1985 18 6 1.4139 -0.1358 2.4146 19 6 1.7280 1.3355 2.5030 20 8 2.3914 1.8670 1.6378 21 7 1.2719 2.0607 3.5436 22 6 1.5582 3.3989 3.6243 23 1 2.1488 3.8722 2.8539 24 6 1.0875 4.1467 4.6967 25 7 0.3684 3.5709 5.6339 26 14 1.4770 5.9703 4.8063 27 1 0.9274 6.6663 3.6151 28 1 0.8645 6.5342 6.0360 29 1 2.9490 6.1601 4.8552 30 1 -0.3634 0.5129 0.8905 31 1 -0.3633 0.5149 -0.8895 32 1 -0.3633 -1.0276 -0.0005 33 1 1.7777 -0.1503 -2.1388 34 1 1.5958 -1.7170 -1.3062 35 1 4.8163 -1.5158 -5.1774 36 1 6.1745 -0.4414 -5.5895 37 1 6.0545 -1.1377 -3.9560 38 1 3.2892 1.8796 -5.2031 39 1 4.5591 1.3203 -6.3182 40 1 3.2009 0.2467 -5.9058 41 1 6.1777 1.1547 -2.9701 42 1 6.2976 1.8507 -4.6037 43 1 5.0272 2.4098 -3.4891 44 1 2.6484 -3.0120 0.1841 45 1 4.1536 -3.4220 -0.6728 46 1 4.1461 -3.2974 1.1027 47 1 3.8235 0.3829 1.2575 48 1 3.8156 -1.1275 2.2001 49 1 1.8172 -0.6466 3.2890 50 1 0.3334 -0.2751 2.3788 51 1 0.7381 1.6364 4.2335 52 1 0.0395 4.0929 6.3824 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093258929.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:10 Heat of formation + Delta-G solvation = -124.647385 kcal Electronic energy + Delta-G solvation = -32454.281987 eV Core-core repulsion = 28260.488701 eV Total energy + Delta-G solvation = -4193.793286 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07716 -41.06971 -39.43437 -37.86420 -36.25987 -35.55026 -35.06182 -33.92961 -33.31923 -31.11409 -29.13821 -28.37967 -28.30043 -27.28728 -26.75981 -25.13868 -24.22357 -22.37243 -21.22457 -20.89635 -20.10168 -19.65990 -18.92953 -17.82235 -17.74108 -17.20483 -16.86757 -16.58040 -16.52080 -15.98708 -15.86263 -15.64268 -15.46355 -15.21717 -15.04283 -14.53421 -14.46584 -14.13467 -13.83135 -13.57521 -13.38623 -13.18192 -13.11920 -13.03201 -12.98313 -12.88007 -12.85247 -12.71486 -12.62555 -12.55793 -12.47601 -12.41374 -12.22404 -12.16128 -12.03401 -11.88600 -11.62216 -11.39352 -11.34862 -11.03800 -10.94921 -10.00448 -9.82783 -8.98180 -8.47852 -5.97489 1.11346 1.34710 1.37635 1.47779 1.74739 2.01820 2.26503 2.78011 2.93629 3.18099 3.25987 3.74235 3.78374 3.79839 3.88360 3.94481 4.02375 4.20318 4.30361 4.31295 4.46760 4.49138 4.54764 4.60089 4.61528 4.63337 4.67094 4.74367 4.74826 4.78733 4.83499 4.86736 4.88537 4.94689 4.97706 5.10051 5.12560 5.23218 5.26747 5.32579 5.35247 5.37989 5.45282 5.48907 5.52327 5.85939 6.01146 6.06087 6.35389 6.57936 7.10710 7.26438 7.54598 8.10582 8.67106 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013347 B = 0.003096 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.348147 B = 9042.575554 C =10071.919768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.045 3.955 3 H 0.046 0.954 4 C 0.131 3.869 5 N -0.591 5.591 6 C 0.648 3.352 7 O -0.596 6.596 8 O -0.368 6.368 9 C 0.122 3.878 10 C -0.174 4.174 11 C -0.134 4.134 12 C -0.181 4.181 13 C 0.162 3.838 14 H 0.084 0.916 15 C -0.138 4.138 16 C 0.038 3.962 17 N -0.484 5.484 18 C 0.047 3.953 19 C 0.409 3.591 20 O -0.623 6.623 21 N -0.569 5.569 22 C -0.333 4.333 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.917 5.917 26 Si 0.987 3.013 27 H -0.273 1.273 28 H -0.269 1.269 29 H -0.275 1.275 30 H 0.043 0.957 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.076 0.924 45 H 0.051 0.949 46 H 0.084 0.916 47 H 0.023 0.977 48 H 0.098 0.902 49 H 0.112 0.888 50 H 0.118 0.882 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.134 -12.757 -16.522 20.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.064 4.064 3 H 0.064 0.936 4 C 0.009 3.991 5 N -0.330 5.330 6 C 0.404 3.596 7 O -0.488 6.488 8 O -0.283 6.283 9 C 0.086 3.914 10 C -0.231 4.231 11 C -0.191 4.191 12 C -0.238 4.238 13 C 0.060 3.940 14 H 0.102 0.898 15 C -0.196 4.196 16 C -0.091 4.091 17 N -0.207 5.207 18 C -0.085 4.085 19 C 0.197 3.803 20 O -0.511 6.511 21 N -0.206 5.206 22 C -0.463 4.463 23 H 0.091 0.909 24 C -0.210 4.210 25 N -0.557 5.557 26 Si 0.811 3.189 27 H -0.198 1.198 28 H -0.193 1.193 29 H -0.201 1.201 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.108 0.892 34 H 0.115 0.885 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.070 0.930 46 H 0.102 0.898 47 H 0.042 0.958 48 H 0.116 0.884 49 H 0.130 0.870 50 H 0.136 0.864 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.718 -12.835 -17.010 21.482 hybrid contribution 0.374 2.097 0.980 2.344 sum 3.091 -10.738 -16.030 19.541 Atomic orbital electron populations 1.21764 0.92348 1.03371 1.01861 1.22276 0.96753 0.97352 0.90041 0.93598 1.21895 0.77719 1.01946 0.97542 1.47245 1.07428 1.63669 1.14659 1.18142 0.83971 0.76675 0.80841 1.90841 1.13913 1.61760 1.82306 1.86301 1.41874 1.75016 1.25081 1.22434 0.89089 0.94977 0.84888 1.22424 1.00740 0.97178 1.02768 1.21871 1.00936 1.01631 0.94645 1.22479 1.00172 0.97947 1.03209 1.21319 0.97729 0.94698 0.80297 0.89799 1.21918 1.03544 0.91682 1.02444 1.22570 0.88761 0.99091 0.98663 1.62570 1.05742 1.51269 1.01081 1.22237 1.02940 0.88205 0.95108 1.22182 0.83809 0.91434 0.82904 1.90439 1.44956 1.74235 1.41510 1.42103 1.47345 1.08788 1.22380 1.19542 1.32673 0.85826 1.08229 0.90866 1.25957 0.96040 1.04218 0.94743 1.69650 1.35592 1.38657 1.11849 0.85082 0.78437 0.77408 0.77978 1.19848 1.19289 1.20074 0.93820 0.91427 0.89438 0.89165 0.88520 0.91519 0.88941 0.92139 0.91958 0.87725 0.90643 0.92417 0.88648 0.93218 0.90512 0.92955 0.89757 0.95824 0.88414 0.87049 0.86393 0.76979 0.91249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.71 71.98 0.63 -2.86 16 2 C 0.04 1.40 2.09 44.99 0.09 1.49 16 3 H 0.05 1.96 5.42 -2.38 -0.01 1.95 16 4 C 0.13 3.46 5.50 86.35 0.48 3.94 16 5 N -0.59 -17.83 2.71 -924.31 -2.50 -20.33 16 6 C 0.65 21.23 7.75 129.79 1.01 22.24 16 7 O -0.60 -21.63 11.33 19.80 0.22 -21.41 16 8 O -0.37 -10.66 8.57 -55.42 -0.47 -11.14 16 9 C 0.12 2.81 1.13 -10.80 -0.01 2.80 16 10 C -0.17 -3.58 8.37 71.98 0.60 -2.98 16 11 C -0.13 -2.12 8.85 71.98 0.64 -1.49 16 12 C -0.18 -4.51 8.37 71.98 0.60 -3.91 16 13 C 0.16 4.60 3.21 44.96 0.14 4.74 16 14 H 0.08 2.64 7.06 -2.39 -0.02 2.62 16 15 C -0.14 -2.91 9.22 71.98 0.66 -2.24 16 16 C 0.04 1.22 4.61 86.38 0.40 1.62 16 17 N -0.48 -14.39 4.19 -874.59 -3.66 -18.05 16 18 C 0.05 1.50 5.30 85.56 0.45 1.95 16 19 C 0.41 18.46 6.96 87.66 0.61 19.07 16 20 O -0.62 -32.81 11.22 -3.07 -0.03 -32.84 16 21 N -0.57 -28.43 5.29 -306.98 -1.62 -30.05 16 22 C -0.33 -18.73 9.68 84.04 0.81 -17.92 16 23 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 24 C -0.01 -0.49 5.50 84.93 0.47 -0.03 16 25 N -0.92 -49.00 13.05 21.66 0.28 -48.71 16 26 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 29 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 30 H 0.04 1.29 6.17 -2.39 -0.01 1.27 16 31 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.09 2.34 6.98 -2.39 -0.02 2.32 16 34 H 0.10 2.07 7.62 -2.38 -0.02 2.05 16 35 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 37 H 0.06 1.61 5.88 -2.39 -0.01 1.60 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.06 8.14 -2.38 -0.02 1.05 16 41 H 0.06 1.81 5.88 -2.39 -0.01 1.79 16 42 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 43 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.08 1.57 7.09 -2.39 -0.02 1.55 16 45 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.02 1.00 6.04 -2.39 -0.01 0.99 16 48 H 0.10 2.73 8.04 -2.38 -0.02 2.71 16 49 H 0.11 3.13 8.05 -2.38 -0.02 3.11 16 50 H 0.12 3.31 6.31 -2.39 -0.02 3.30 16 51 H 0.40 18.81 7.90 -92.71 -0.73 18.07 16 52 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -70.05 395.97 2.01 -68.04 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: 0.19 Total: 42.93 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 7.58 Total: 26.44 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -7.50 Total: -117.14 kcal Atomic # 8 Polarization: -65.10 SS G_CDS: -0.28 Total: -65.39 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -70.05 2.01 -68.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093258929.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.609 kcal (2) G-P(sol) polarization free energy of solvation -70.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds