Wall clock time and date at job start Wed Apr 1 2020 01:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.48907 * 2 1 4 4 C 1.53240 * 109.49341 * 239.92105 * 2 1 3 5 5 N 1.47070 * 108.52439 * 186.20800 * 4 2 1 6 6 C 1.34776 * 120.88309 * 231.20591 * 5 4 2 7 7 O 1.21511 * 120.00033 * 175.03723 * 6 5 4 8 8 O 1.34632 * 120.00019 * 355.03916 * 6 5 4 9 9 C 1.45208 * 117.00269 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46507 * 60.00159 * 9 8 6 11 11 C 1.52997 * 109.46944 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47041 * 300.00360 * 9 8 6 13 13 C 1.47080 * 118.23734 * 51.18431 * 5 4 2 14 14 H 1.08994 * 109.79325 * 68.61969 * 13 5 4 15 15 C 1.52998 * 109.62825 * 189.10807 * 13 5 4 16 16 C 1.53242 * 108.51830 * 308.81758 * 13 5 4 17 17 N 1.46890 * 109.34190 * 53.83229 * 16 13 5 18 18 C 1.46905 * 111.00350 * 172.74781 * 17 16 13 19 19 C 1.50701 * 109.46570 * 284.38931 * 18 17 16 20 20 O 1.21286 * 120.00246 * 359.97438 * 19 18 17 21 21 N 1.34780 * 119.99434 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99553 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99988 * 359.97438 * 22 21 19 24 24 C 1.38953 * 119.99877 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99957 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99930 * 0.02562 * 24 22 21 27 27 H 1.48505 * 109.47288 * 89.99643 * 26 24 22 28 28 H 1.48496 * 109.47281 * 209.99638 * 26 24 22 29 29 H 1.48500 * 109.47343 * 329.99661 * 26 24 22 30 30 H 1.09002 * 109.47149 * 307.64447 * 1 2 3 31 31 H 1.08998 * 109.47293 * 67.64846 * 1 2 3 32 32 H 1.09005 * 109.47208 * 187.64954 * 1 2 3 33 33 H 1.09003 * 109.62730 * 305.92410 * 4 2 1 34 34 H 1.09004 * 109.62823 * 66.30213 * 4 2 1 35 35 H 1.08998 * 109.47014 * 60.00177 * 10 9 8 36 36 H 1.09000 * 109.46902 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.46955 * 300.00166 * 10 9 8 38 38 H 1.09004 * 109.47001 * 60.00984 * 11 9 8 39 39 H 1.09004 * 109.46630 * 179.97438 * 11 9 8 40 40 H 1.08998 * 109.47646 * 300.00478 * 11 9 8 41 41 H 1.09004 * 109.47248 * 59.99852 * 12 9 8 42 42 H 1.09000 * 109.46797 * 179.97438 * 12 9 8 43 43 H 1.09000 * 109.47153 * 299.99552 * 12 9 8 44 44 H 1.09001 * 109.47018 * 173.10293 * 15 13 5 45 45 H 1.08997 * 109.47585 * 53.10928 * 15 13 5 46 46 H 1.08997 * 109.47189 * 293.10411 * 15 13 5 47 47 H 1.09006 * 109.49268 * 173.79505 * 16 13 5 48 48 H 1.09006 * 109.49207 * 293.86572 * 16 13 5 49 49 H 1.09005 * 109.46812 * 44.38177 * 18 17 16 50 50 H 1.08988 * 109.47615 * 164.38436 * 18 17 16 51 51 H 0.97000 * 120.00625 * 359.97438 * 21 19 18 52 52 H 0.97000 * 119.99788 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0414 -0.7240 -1.2500 5 7 3.5041 -0.8434 -1.1553 6 6 4.2976 -0.4491 -2.1708 7 8 5.5057 -0.4704 -2.0416 8 8 3.7518 -0.0315 -3.3286 9 6 4.6669 0.3789 -4.3787 10 6 5.5743 -0.7952 -4.7518 11 6 3.8687 0.8168 -5.6083 12 6 5.5218 1.5466 -3.8824 13 6 4.0782 -1.4041 0.0773 14 1 3.8314 -2.4631 0.1509 15 6 5.5982 -1.2305 0.0617 16 6 3.4866 -0.6533 1.2751 17 7 2.0203 -0.6936 1.1986 18 6 1.4140 -0.1353 2.4147 19 6 1.5327 -1.1326 3.5383 20 8 2.0690 -2.2031 3.3449 21 7 1.0428 -0.8348 4.7581 22 6 1.1512 -1.7418 5.7804 23 1 1.6288 -2.6950 5.6082 24 6 0.6466 -1.4346 7.0381 25 7 0.7501 -2.3042 8.0179 26 14 -0.1801 0.2138 7.3357 27 1 -1.6336 0.0967 7.0546 28 1 0.0193 0.6194 8.7502 29 1 0.4167 1.2360 6.4389 30 1 -0.3633 0.6277 0.8137 31 1 -0.3634 0.3908 -0.9504 32 1 -0.3634 -1.0186 0.1368 33 1 1.5957 -1.7172 -1.3059 34 1 1.7746 -0.1525 -2.1391 35 1 4.9652 -1.6271 -5.1053 36 1 6.2609 -0.4873 -5.5404 37 1 6.1429 -1.1076 -3.8759 38 1 3.2220 1.6531 -5.3427 39 1 4.5557 1.1253 -6.3964 40 1 3.2599 -0.0154 -5.9616 41 1 6.0905 1.2342 -3.0066 42 1 6.2090 1.8544 -4.6706 43 1 4.8754 2.3830 -3.6166 44 1 6.0085 -1.5338 1.0249 45 1 5.8426 -0.1846 -0.1241 46 1 6.0265 -1.8493 -0.7268 47 1 3.8158 -1.1270 2.2000 48 1 3.8235 0.3833 1.2571 49 1 1.9309 0.7843 2.6891 50 1 0.3618 0.0805 2.2300 51 1 0.6141 0.0215 4.9128 52 1 0.3975 -2.0899 8.8958 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093258930.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:14 Heat of formation + Delta-G solvation = -105.702183 kcal Electronic energy + Delta-G solvation = -31894.562935 eV Core-core repulsion = 27701.591175 eV Total energy + Delta-G solvation = -4192.971760 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.14048 -40.76556 -39.66030 -38.10583 -36.12299 -35.72745 -35.17231 -33.96036 -33.70551 -31.16705 -29.54976 -28.31923 -28.24592 -27.28849 -26.30939 -25.17843 -24.28857 -22.11220 -21.44881 -21.11805 -20.27494 -20.14931 -18.60488 -17.73436 -17.59996 -17.33744 -16.90652 -16.78521 -16.62570 -16.01207 -15.68863 -15.52725 -15.46231 -15.13139 -14.94527 -14.64559 -14.48401 -14.34025 -14.10774 -13.79052 -13.77115 -13.45020 -13.16759 -13.07216 -13.00656 -12.86300 -12.79059 -12.72787 -12.68439 -12.48006 -12.42241 -12.39609 -12.20639 -12.08930 -11.96476 -11.94526 -11.82893 -11.45695 -11.30168 -10.43445 -10.36365 -10.20561 -9.80345 -9.22389 -8.38389 -5.98564 1.09129 1.31157 1.36920 1.45401 1.77297 2.00700 2.24874 2.51352 2.79914 3.15200 3.20764 3.70362 3.76079 3.80569 3.84989 3.94889 3.99589 4.05947 4.15441 4.20277 4.26140 4.37523 4.43520 4.49846 4.57625 4.61228 4.65566 4.70981 4.74883 4.80717 4.81324 4.83074 4.88955 4.92418 4.93918 5.05154 5.10972 5.11949 5.24849 5.32688 5.36580 5.38879 5.48416 5.51600 5.55924 5.86410 6.00223 6.13137 6.40673 6.63358 6.92527 7.31026 7.44183 8.02112 8.79367 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.024915 B = 0.002440 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.563435 B =11471.839413 C =11987.125917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.052 0.948 4 C 0.125 3.875 5 N -0.595 5.595 6 C 0.650 3.350 7 O -0.577 6.577 8 O -0.368 6.368 9 C 0.126 3.874 10 C -0.179 4.179 11 C -0.135 4.135 12 C -0.178 4.178 13 C 0.171 3.829 14 H 0.071 0.929 15 C -0.123 4.123 16 C 0.059 3.941 17 N -0.530 5.530 18 C 0.049 3.951 19 C 0.454 3.546 20 O -0.603 6.603 21 N -0.595 5.595 22 C -0.323 4.323 23 H 0.055 0.945 24 C -0.018 4.018 25 N -0.937 5.937 26 Si 0.964 3.036 27 H -0.256 1.256 28 H -0.278 1.278 29 H -0.232 1.232 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.114 0.886 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.088 0.912 43 H 0.060 0.940 44 H 0.051 0.949 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.075 0.925 50 H 0.130 0.870 51 H 0.388 0.612 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.079 13.869 -27.930 31.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.039 4.039 3 H 0.070 0.930 4 C 0.002 3.998 5 N -0.336 5.336 6 C 0.406 3.594 7 O -0.468 6.468 8 O -0.283 6.283 9 C 0.090 3.910 10 C -0.236 4.236 11 C -0.192 4.192 12 C -0.235 4.235 13 C 0.069 3.931 14 H 0.089 0.911 15 C -0.181 4.181 16 C -0.070 4.070 17 N -0.255 5.255 18 C -0.082 4.082 19 C 0.242 3.758 20 O -0.486 6.486 21 N -0.238 5.238 22 C -0.452 4.452 23 H 0.073 0.927 24 C -0.216 4.216 25 N -0.578 5.578 26 Si 0.784 3.216 27 H -0.180 1.180 28 H -0.203 1.203 29 H -0.155 1.155 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.059 0.941 49 H 0.093 0.907 50 H 0.147 0.853 51 H 0.224 0.776 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.654 12.619 -27.962 30.792 hybrid contribution 0.061 0.870 1.256 1.529 sum 2.715 13.489 -26.706 30.042 Atomic orbital electron populations 1.21923 0.91521 1.03085 1.03863 1.22126 0.97405 0.95459 0.88911 0.93046 1.21980 0.77471 1.02038 0.98275 1.47195 1.07491 1.64507 1.14382 1.18150 0.83968 0.76668 0.80651 1.90944 1.13658 1.59961 1.82271 1.86300 1.41925 1.77760 1.22289 1.22377 0.89045 0.94610 0.85011 1.22462 1.00249 0.97724 1.03163 1.21870 1.00858 1.02399 0.94026 1.22450 1.00552 0.97125 1.03366 1.21197 0.94438 0.96818 0.80676 0.91110 1.22040 0.91928 1.03354 1.00737 1.22429 0.87585 0.98641 0.98337 1.61428 1.06140 1.56353 1.01553 1.21942 1.03483 0.94294 0.88477 1.20883 0.81855 0.89294 0.83805 1.90538 1.47547 1.27417 1.83116 1.42049 1.55034 1.17339 1.09335 1.18976 1.37735 0.98780 0.89729 0.92681 1.26106 0.98068 1.03187 0.94222 1.69810 1.47007 1.37902 1.03048 0.85374 0.79494 0.77606 0.79092 1.18038 1.20281 1.15532 0.91052 0.89011 0.92225 0.90678 0.86824 0.92277 0.89273 0.91961 0.91127 0.88152 0.91283 0.91990 0.89309 0.92121 0.93021 0.91715 0.91421 0.91149 0.94143 0.90718 0.85277 0.77644 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 8.54 71.98 0.61 -1.77 16 2 C 0.07 1.46 2.60 45.00 0.12 1.58 16 3 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 4 C 0.12 2.56 5.87 86.35 0.51 3.07 16 5 N -0.60 -15.00 3.01 -924.32 -2.78 -17.78 16 6 C 0.65 16.54 7.64 129.79 0.99 17.53 16 7 O -0.58 -16.34 7.39 19.81 0.15 -16.19 16 8 O -0.37 -7.83 8.60 -55.42 -0.48 -8.30 16 9 C 0.13 2.07 1.13 -10.79 -0.01 2.06 16 10 C -0.18 -3.01 8.37 71.98 0.60 -2.40 16 11 C -0.13 -1.35 8.85 71.98 0.64 -0.71 16 12 C -0.18 -2.92 8.37 71.98 0.60 -2.31 16 13 C 0.17 4.93 3.65 44.96 0.16 5.09 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.12 -3.42 7.62 71.98 0.55 -2.88 16 16 C 0.06 1.81 4.55 86.39 0.39 2.21 16 17 N -0.53 -15.58 4.04 -874.56 -3.53 -19.11 16 18 C 0.05 1.47 5.30 85.56 0.45 1.93 16 19 C 0.45 20.20 7.47 87.66 0.66 20.85 16 20 O -0.60 -32.90 14.76 -3.05 -0.04 -32.94 16 21 N -0.60 -27.79 5.09 -306.98 -1.56 -29.35 16 22 C -0.32 -18.84 10.16 84.04 0.85 -17.98 16 23 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 24 C -0.02 -0.98 5.50 84.93 0.47 -0.51 16 25 N -0.94 -56.66 13.96 21.66 0.30 -56.36 16 26 Si 0.96 38.66 27.74 68.60 1.90 40.56 16 27 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 28 H -0.28 -11.13 7.11 99.48 0.71 -10.43 16 29 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 30 H 0.07 1.06 6.38 -2.39 -0.02 1.04 16 31 H 0.09 1.00 8.13 -2.39 -0.02 0.98 16 32 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 1.86 7.04 -2.39 -0.02 1.84 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.06 1.41 5.88 -2.39 -0.01 1.40 16 38 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.06 1.38 5.88 -2.39 -0.01 1.37 16 42 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.06 1.87 6.75 -2.39 -0.02 1.85 16 46 H 0.07 1.96 6.80 -2.39 -0.02 1.94 16 47 H 0.07 2.66 6.70 -2.38 -0.02 2.64 16 48 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 49 H 0.07 1.95 8.00 -2.38 -0.02 1.93 16 50 H 0.13 3.11 5.37 -2.39 -0.01 3.10 16 51 H 0.39 14.97 5.76 -92.71 -0.53 14.44 16 52 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -76.82 395.18 1.88 -74.95 By element: Atomic # 1 Polarization: 38.47 SS G_CDS: 0.32 Total: 38.80 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 7.60 Total: 25.74 kcal Atomic # 7 Polarization: -115.03 SS G_CDS: -7.57 Total: -122.60 kcal Atomic # 8 Polarization: -57.07 SS G_CDS: -0.38 Total: -57.44 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.56 kcal Total: -76.82 1.88 -74.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093258930.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.756 kcal (2) G-P(sol) polarization free energy of solvation -76.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds