Wall clock time and date at job start Wed Apr 1 2020 01:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.49789 * 2 1 4 4 C 1.53245 * 109.49374 * 239.94711 * 2 1 3 5 5 N 1.47084 * 108.51986 * 186.21257 * 4 2 1 6 6 C 1.34776 * 120.87623 * 231.20317 * 5 4 2 7 7 O 1.21508 * 119.99786 * 179.97438 * 6 5 4 8 8 O 1.34632 * 120.00397 * 359.97438 * 6 5 4 9 9 C 1.45199 * 117.00444 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46568 * 60.00125 * 9 8 6 11 11 C 1.52996 * 109.47576 * 179.97438 * 9 8 6 12 12 C 1.52995 * 109.47282 * 300.00483 * 9 8 6 13 13 C 1.47076 * 118.24003 * 51.18564 * 5 4 2 14 14 C 1.53239 * 108.51999 * 308.81376 * 13 5 4 15 15 H 1.09001 * 109.49126 * 293.87166 * 14 13 5 16 16 C 1.52999 * 109.49386 * 173.81746 * 14 13 5 17 17 N 1.46895 * 109.49413 * 120.08230 * 2 1 3 18 18 C 1.46905 * 110.99875 * 307.20976 * 17 2 1 19 19 C 1.50697 * 109.47189 * 300.50434 * 18 17 2 20 20 O 1.21288 * 119.99973 * 354.48559 * 19 18 17 21 21 N 1.34780 * 120.00163 * 174.48558 * 19 18 17 22 22 C 1.37088 * 120.00037 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00502 * 359.97438 * 22 21 19 24 24 C 1.38959 * 120.00117 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99401 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00350 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47289 * 90.00071 * 26 24 22 28 28 H 1.48497 * 109.47376 * 210.00373 * 26 24 22 29 29 H 1.48505 * 109.46984 * 330.00217 * 26 24 22 30 30 H 1.08997 * 109.47073 * 186.33706 * 1 2 3 31 31 H 1.08999 * 109.47108 * 306.33896 * 1 2 3 32 32 H 1.09001 * 109.47234 * 66.33692 * 1 2 3 33 33 H 1.08991 * 109.62969 * 66.49884 * 4 2 1 34 34 H 1.09006 * 109.62657 * 305.91923 * 4 2 1 35 35 H 1.08993 * 109.47014 * 60.00302 * 10 9 8 36 36 H 1.09004 * 109.46349 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47184 * 299.99923 * 10 9 8 38 38 H 1.09007 * 109.46857 * 60.00150 * 11 9 8 39 39 H 1.09000 * 109.47624 * 180.02562 * 11 9 8 40 40 H 1.09003 * 109.47278 * 300.00587 * 11 9 8 41 41 H 1.09002 * 109.47366 * 59.99528 * 12 9 8 42 42 H 1.08998 * 109.47322 * 179.97438 * 12 9 8 43 43 H 1.09002 * 109.47018 * 300.00009 * 12 9 8 44 44 H 1.08996 * 109.62684 * 189.10274 * 13 5 4 45 45 H 1.09003 * 109.78789 * 68.61468 * 13 5 4 46 46 H 1.08996 * 109.47285 * 53.22323 * 16 14 13 47 47 H 1.09006 * 109.47292 * 173.22304 * 16 14 13 48 48 H 1.09000 * 109.47351 * 293.22035 * 16 14 13 49 49 H 1.09007 * 109.46804 * 60.50546 * 18 17 2 50 50 H 1.09003 * 109.47251 * 180.49730 * 18 17 2 51 51 H 0.97005 * 119.99251 * 0.02562 * 21 19 18 52 52 H 0.97003 * 119.99871 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 -1.2504 5 7 3.5043 -0.8429 -1.1555 6 6 4.2978 -0.4482 -2.1709 7 8 5.5045 -0.5537 -2.0753 8 8 3.7534 0.0631 -3.2912 9 6 4.6684 0.4678 -4.3434 10 6 5.4881 -0.7411 -4.7993 11 6 3.8721 1.0193 -5.5277 12 6 5.6094 1.5509 -3.8123 13 6 4.0782 -1.4042 0.0768 14 6 3.4867 -0.6540 1.2749 15 1 3.8236 0.3825 1.2574 16 6 3.9490 -1.3192 2.5728 17 7 2.0202 -0.6941 1.1982 18 6 1.4140 -0.1364 2.4146 19 6 1.7538 1.3280 2.5192 20 8 2.5147 1.8325 1.7208 21 7 1.2120 2.0772 3.5000 22 6 1.5215 3.4093 3.5954 23 1 2.1998 3.8584 2.8849 24 6 0.9634 4.1815 4.6068 25 7 0.1393 3.6347 5.4722 26 14 1.3856 5.9964 4.7373 27 1 0.4169 6.7888 3.9379 28 1 1.3173 6.4196 6.1591 29 1 2.7585 6.2238 4.2186 30 1 -0.3633 -1.0214 0.1134 31 1 -0.3633 0.6089 0.8278 32 1 -0.3634 0.4125 -0.9413 33 1 1.7776 -0.1499 -2.1389 34 1 1.5957 -1.7167 -1.3067 35 1 4.8177 -1.5127 -5.1777 36 1 6.1753 -0.4371 -5.5889 37 1 6.0554 -1.1344 -3.9558 38 1 3.2878 1.8804 -5.2031 39 1 4.5589 1.3227 -6.3178 40 1 3.2019 0.2473 -5.9059 41 1 6.1768 1.1576 -2.9687 42 1 6.2966 1.8545 -4.6020 43 1 5.0255 2.4121 -3.4874 44 1 5.1611 -1.2806 0.0657 45 1 3.8312 -2.4634 0.1498 46 1 5.0360 -1.3992 2.5729 47 1 3.6289 -0.7176 3.4236 48 1 3.5114 -2.3148 2.6467 49 1 0.3315 -0.2559 2.3687 50 1 1.8009 -0.6625 3.2874 51 1 0.6037 1.6735 4.1387 52 1 -0.2506 4.1738 6.1780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111289376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:29 Heat of formation + Delta-G solvation = -103.704262 kcal Electronic energy + Delta-G solvation = -32457.543339 eV Core-core repulsion = 28264.658215 eV Total energy + Delta-G solvation = -4192.885124 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.86477 -39.73873 -37.82662 -36.63526 -34.78315 -34.01137 -33.61471 -33.37823 -31.35316 -29.40446 -27.52797 -27.44008 -27.20588 -26.83921 -25.52204 -23.95235 -21.91011 -20.99875 -20.17817 -19.31559 -18.94450 -17.91452 -17.62417 -16.75230 -16.19159 -15.89590 -15.84725 -15.33691 -14.92630 -14.65749 -14.51280 -14.44321 -13.93266 -13.85087 -13.52156 -13.38263 -13.31200 -12.64528 -12.54152 -12.48576 -12.28300 -12.10786 -12.08419 -11.96878 -11.77186 -11.69656 -11.56193 -11.50579 -11.32105 -11.29096 -11.18240 -11.14257 -10.73419 -10.61463 -10.44206 -10.37857 -10.31725 -10.28122 -9.89207 -9.48716 -9.27432 -8.60397 -8.02674 -7.43132 -6.48362 -3.89584 2.21180 2.95601 3.12128 3.22076 3.27763 3.79845 3.86855 4.12266 4.18825 4.63275 4.67456 4.81758 4.89992 5.03741 5.09347 5.15245 5.27612 5.34204 5.38692 5.43972 5.46963 5.49652 5.56411 5.59036 5.67463 5.75896 5.78163 5.78962 5.80063 5.86716 5.87782 5.89068 6.00011 6.00698 6.17741 6.19069 6.23161 6.28527 6.34189 6.35403 6.48446 6.52003 6.63508 6.76345 7.26941 7.42410 7.48447 7.53437 7.98220 8.44334 8.52911 9.10440 9.46330 9.97021 10.68128 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.003112 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.781164 B = 8995.522404 C = 9867.021573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 H 0.088 0.912 4 C 0.126 3.874 5 N -0.590 5.590 6 C 0.655 3.345 7 O -0.575 6.575 8 O -0.362 6.362 9 C 0.136 3.864 10 C -0.181 4.181 11 C -0.140 4.140 12 C -0.184 4.184 13 C 0.142 3.858 14 C 0.049 3.951 15 H 0.089 0.911 16 C -0.142 4.142 17 N -0.503 5.503 18 C 0.034 3.966 19 C 0.408 3.592 20 O -0.593 6.593 21 N -0.556 5.556 22 C -0.301 4.301 23 H 0.102 0.898 24 C 0.025 3.975 25 N -0.898 5.898 26 Si 0.928 3.072 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.270 1.270 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.065 0.935 41 H 0.088 0.912 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.058 0.942 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 -10.851 -14.849 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.060 4.060 3 H 0.106 0.894 4 C 0.003 3.997 5 N -0.329 5.329 6 C 0.410 3.590 7 O -0.465 6.465 8 O -0.277 6.277 9 C 0.099 3.901 10 C -0.239 4.239 11 C -0.197 4.197 12 C -0.241 4.241 13 C 0.020 3.980 14 C -0.059 4.059 15 H 0.107 0.893 16 C -0.200 4.200 17 N -0.228 5.228 18 C -0.097 4.097 19 C 0.193 3.807 20 O -0.480 6.480 21 N -0.192 5.192 22 C -0.431 4.431 23 H 0.120 0.880 24 C -0.178 4.178 25 N -0.539 5.539 26 Si 0.755 3.245 27 H -0.204 1.204 28 H -0.208 1.208 29 H -0.194 1.194 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.084 0.916 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.109 0.891 50 H 0.111 0.889 51 H 0.226 0.774 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.064 -10.929 -15.310 19.245 hybrid contribution -0.074 1.625 0.694 1.769 sum 3.990 -9.303 -14.616 17.779 Atomic orbital electron populations 1.21809 0.94117 1.02031 1.02120 1.22226 0.95299 0.99230 0.89237 0.89403 1.21881 0.78301 1.00978 0.98566 1.46968 1.06933 1.64198 1.14846 1.17918 0.84047 0.76709 0.80291 1.90853 1.12977 1.60939 1.81775 1.86289 1.41050 1.75286 1.25104 1.22023 0.88684 0.94685 0.84740 1.22504 1.00634 0.97513 1.03211 1.21849 1.00600 1.01765 0.95508 1.22512 0.99949 0.98261 1.03379 1.21791 0.98939 0.96763 0.80494 1.22234 0.88263 1.01455 0.93995 0.89318 1.21810 1.00775 1.00810 0.96655 1.62529 1.06187 1.52641 1.01415 1.22177 1.00894 0.92539 0.94102 1.21056 0.85932 0.89121 0.84549 1.90420 1.40010 1.73904 1.43651 1.42048 1.41059 1.09564 1.26486 1.19695 1.26161 0.84358 1.12921 0.88049 1.25273 0.96273 1.00580 0.95626 1.69609 1.30452 1.37257 1.16585 0.85882 0.79136 0.82049 0.77387 1.20362 1.20844 1.19441 0.92064 0.91958 0.92354 0.89327 0.91120 0.92354 0.91372 0.89377 0.91387 0.90321 0.91592 0.89330 0.91390 0.92027 0.88872 0.91042 0.92263 0.91961 0.92017 0.89071 0.88888 0.77425 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.48 37.16 0.31 -1.64 16 2 C 0.05 0.78 2.11 -67.59 -0.14 0.63 16 3 H 0.09 1.79 5.72 -51.93 -0.30 1.49 16 4 C 0.13 1.73 5.90 -3.60 -0.02 1.71 16 5 N -0.59 -9.01 3.01 -178.25 -0.54 -9.54 16 6 C 0.66 10.53 7.75 54.05 0.42 10.95 16 7 O -0.58 -10.03 11.33 -19.28 -0.22 -10.25 16 8 O -0.36 -5.23 8.57 -40.30 -0.35 -5.58 16 9 C 0.14 1.60 1.13 -90.62 -0.10 1.50 16 10 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16 11 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 12 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 13 C 0.14 2.06 5.88 -3.60 -0.02 2.04 16 14 C 0.05 0.79 2.19 -67.59 -0.15 0.65 16 15 H 0.09 1.83 5.75 -51.93 -0.30 1.53 16 16 C -0.14 -1.96 8.47 37.16 0.31 -1.64 16 17 N -0.50 -7.89 4.52 -219.85 -0.99 -8.88 16 18 C 0.03 0.58 4.88 -4.97 -0.02 0.55 16 19 C 0.41 8.99 6.99 -10.99 -0.08 8.91 16 20 O -0.59 -14.87 11.25 5.55 0.06 -14.81 16 21 N -0.56 -13.53 5.29 -10.96 -0.06 -13.59 16 22 C -0.30 -8.19 9.68 -14.93 -0.14 -8.34 16 23 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 24 C 0.02 0.65 5.50 -17.46 -0.10 0.55 16 25 N -0.90 -23.95 13.05 55.50 0.72 -23.22 16 26 Si 0.93 20.82 29.55 -169.99 -5.02 15.80 16 27 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.96 6.57 -51.93 -0.34 0.62 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.17 6.98 -51.93 -0.36 0.81 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.09 1.17 5.88 -51.93 -0.31 0.86 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.32 5.88 -51.93 -0.31 1.01 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 1.40 7.06 -51.93 -0.37 1.03 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.06 0.94 6.65 -51.93 -0.35 0.60 16 48 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.09 1.40 6.38 -51.93 -0.33 1.07 16 50 H 0.09 1.44 6.07 -51.93 -0.32 1.13 16 51 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 52 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 394.61 15.07 5.95 5.95 Total: -1.00 -30.54 394.61 -7.82 -38.36 By element: Atomic # 1 Polarization: 23.01 SS G_CDS: -8.60 Total: 14.41 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: 1.22 Total: 11.37 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.86 Total: -55.24 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.50 Total: -30.64 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.54 -7.82 -38.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111289376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.347 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds