Wall clock time and date at job start Wed Apr 1 2020 01:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.49789 * 2 1 4 4 C 1.53245 * 109.49374 * 239.94711 * 2 1 3 5 5 N 1.47084 * 108.51986 * 186.21257 * 4 2 1 6 6 C 1.34776 * 120.87623 * 231.20317 * 5 4 2 7 7 O 1.21508 * 119.99786 * 179.97438 * 6 5 4 8 8 O 1.34632 * 120.00397 * 359.97438 * 6 5 4 9 9 C 1.45199 * 117.00444 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46568 * 60.00125 * 9 8 6 11 11 C 1.52996 * 109.47576 * 179.97438 * 9 8 6 12 12 C 1.52995 * 109.47282 * 300.00483 * 9 8 6 13 13 C 1.47076 * 118.24003 * 51.18564 * 5 4 2 14 14 C 1.53239 * 108.51999 * 308.81376 * 13 5 4 15 15 H 1.09001 * 109.49126 * 293.87166 * 14 13 5 16 16 C 1.52999 * 109.49386 * 173.81746 * 14 13 5 17 17 N 1.46895 * 109.49413 * 120.08230 * 2 1 3 18 18 C 1.46905 * 110.99875 * 307.20976 * 17 2 1 19 19 C 1.50697 * 109.47189 * 300.50434 * 18 17 2 20 20 O 1.21288 * 119.99973 * 354.48559 * 19 18 17 21 21 N 1.34780 * 120.00163 * 174.48558 * 19 18 17 22 22 C 1.37088 * 120.00037 * 179.97438 * 21 19 18 23 23 H 1.08005 * 120.00502 * 359.97438 * 22 21 19 24 24 C 1.38959 * 120.00117 * 180.02562 * 22 21 19 25 25 N 1.31415 * 119.99401 * 0.02562 * 24 22 21 26 26 Si 1.86794 * 120.00350 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47289 * 90.00071 * 26 24 22 28 28 H 1.48497 * 109.47376 * 210.00373 * 26 24 22 29 29 H 1.48505 * 109.46984 * 330.00217 * 26 24 22 30 30 H 1.08997 * 109.47073 * 186.33706 * 1 2 3 31 31 H 1.08999 * 109.47108 * 306.33896 * 1 2 3 32 32 H 1.09001 * 109.47234 * 66.33692 * 1 2 3 33 33 H 1.08991 * 109.62969 * 66.49884 * 4 2 1 34 34 H 1.09006 * 109.62657 * 305.91923 * 4 2 1 35 35 H 1.08993 * 109.47014 * 60.00302 * 10 9 8 36 36 H 1.09004 * 109.46349 * 180.02562 * 10 9 8 37 37 H 1.09002 * 109.47184 * 299.99923 * 10 9 8 38 38 H 1.09007 * 109.46857 * 60.00150 * 11 9 8 39 39 H 1.09000 * 109.47624 * 180.02562 * 11 9 8 40 40 H 1.09003 * 109.47278 * 300.00587 * 11 9 8 41 41 H 1.09002 * 109.47366 * 59.99528 * 12 9 8 42 42 H 1.08998 * 109.47322 * 179.97438 * 12 9 8 43 43 H 1.09002 * 109.47018 * 300.00009 * 12 9 8 44 44 H 1.08996 * 109.62684 * 189.10274 * 13 5 4 45 45 H 1.09003 * 109.78789 * 68.61468 * 13 5 4 46 46 H 1.08996 * 109.47285 * 53.22323 * 16 14 13 47 47 H 1.09006 * 109.47292 * 173.22304 * 16 14 13 48 48 H 1.09000 * 109.47351 * 293.22035 * 16 14 13 49 49 H 1.09007 * 109.46804 * 60.50546 * 18 17 2 50 50 H 1.09003 * 109.47251 * 180.49730 * 18 17 2 51 51 H 0.97005 * 119.99251 * 0.02562 * 21 19 18 52 52 H 0.97003 * 119.99871 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7235 -1.2504 5 7 3.5043 -0.8429 -1.1555 6 6 4.2978 -0.4482 -2.1709 7 8 5.5045 -0.5537 -2.0753 8 8 3.7534 0.0631 -3.2912 9 6 4.6684 0.4678 -4.3434 10 6 5.4881 -0.7411 -4.7993 11 6 3.8721 1.0193 -5.5277 12 6 5.6094 1.5509 -3.8123 13 6 4.0782 -1.4042 0.0768 14 6 3.4867 -0.6540 1.2749 15 1 3.8236 0.3825 1.2574 16 6 3.9490 -1.3192 2.5728 17 7 2.0202 -0.6941 1.1982 18 6 1.4140 -0.1364 2.4146 19 6 1.7538 1.3280 2.5192 20 8 2.5147 1.8325 1.7208 21 7 1.2120 2.0772 3.5000 22 6 1.5215 3.4093 3.5954 23 1 2.1998 3.8584 2.8849 24 6 0.9634 4.1815 4.6068 25 7 0.1393 3.6347 5.4722 26 14 1.3856 5.9964 4.7373 27 1 0.4169 6.7888 3.9379 28 1 1.3173 6.4196 6.1591 29 1 2.7585 6.2238 4.2186 30 1 -0.3633 -1.0214 0.1134 31 1 -0.3633 0.6089 0.8278 32 1 -0.3634 0.4125 -0.9413 33 1 1.7776 -0.1499 -2.1389 34 1 1.5957 -1.7167 -1.3067 35 1 4.8177 -1.5127 -5.1777 36 1 6.1753 -0.4371 -5.5889 37 1 6.0554 -1.1344 -3.9558 38 1 3.2878 1.8804 -5.2031 39 1 4.5589 1.3227 -6.3178 40 1 3.2019 0.2473 -5.9059 41 1 6.1768 1.1576 -2.9687 42 1 6.2966 1.8545 -4.6020 43 1 5.0255 2.4121 -3.4874 44 1 5.1611 -1.2806 0.0657 45 1 3.8312 -2.4634 0.1498 46 1 5.0360 -1.3992 2.5729 47 1 3.6289 -0.7176 3.4236 48 1 3.5114 -2.3148 2.6467 49 1 0.3315 -0.2559 2.3687 50 1 1.8009 -0.6625 3.2874 51 1 0.6037 1.6735 4.1387 52 1 -0.2506 4.1738 6.1780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111289376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:29:28 Heat of formation + Delta-G solvation = -124.958043 kcal Electronic energy + Delta-G solvation = -32458.464972 eV Core-core repulsion = 28264.658215 eV Total energy + Delta-G solvation = -4193.806757 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06123 -41.15598 -39.31315 -37.92038 -36.22801 -35.65301 -34.83628 -34.54624 -33.32448 -30.76208 -28.52521 -28.38393 -28.31709 -27.98018 -27.12581 -25.53249 -23.05689 -22.24254 -21.58948 -20.78256 -20.33401 -19.70431 -18.91452 -17.88679 -17.74829 -17.20568 -17.11488 -16.55301 -16.49425 -16.30987 -15.83567 -15.61584 -15.46435 -15.19525 -14.86997 -14.62166 -14.48928 -13.94959 -13.85530 -13.57450 -13.40915 -13.29826 -13.11629 -13.06441 -13.01422 -12.88464 -12.84222 -12.70766 -12.60044 -12.48332 -12.46282 -12.44650 -12.31046 -12.16275 -11.94098 -11.88150 -11.74855 -11.39890 -11.29498 -11.05772 -10.98535 -10.00236 -9.83461 -9.00355 -8.48205 -5.97692 1.10870 1.32754 1.37338 1.49156 1.73067 2.01644 2.26244 2.77444 2.89964 3.17764 3.25941 3.74289 3.78852 3.81200 3.83269 3.94358 4.03175 4.24020 4.27644 4.29971 4.45695 4.51694 4.52725 4.58988 4.60664 4.62926 4.64007 4.73575 4.74960 4.76781 4.80657 4.82822 4.85426 4.87061 5.02795 5.09393 5.15169 5.22253 5.22905 5.26828 5.32060 5.35972 5.41345 5.46310 5.47262 5.87615 6.01951 6.08847 6.32179 6.57532 7.10570 7.24049 7.54292 8.10255 8.67085 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013249 B = 0.003112 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.781164 B = 8995.522404 C = 9867.021573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.049 3.951 3 H 0.035 0.965 4 C 0.132 3.868 5 N -0.597 5.597 6 C 0.648 3.352 7 O -0.595 6.595 8 O -0.368 6.368 9 C 0.122 3.878 10 C -0.174 4.174 11 C -0.134 4.134 12 C -0.181 4.181 13 C 0.147 3.853 14 C 0.051 3.949 15 H 0.036 0.964 16 C -0.136 4.136 17 N -0.484 5.484 18 C 0.044 3.956 19 C 0.412 3.588 20 O -0.624 6.624 21 N -0.570 5.570 22 C -0.331 4.331 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.917 5.917 26 Si 0.987 3.013 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.277 1.277 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.104 0.896 40 H 0.075 0.925 41 H 0.057 0.943 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.083 0.917 45 H 0.101 0.899 46 H 0.069 0.931 47 H 0.044 0.956 48 H 0.089 0.911 49 H 0.114 0.886 50 H 0.114 0.886 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.546 -12.490 -16.087 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.060 4.060 3 H 0.053 0.947 4 C 0.010 3.990 5 N -0.336 5.336 6 C 0.404 3.596 7 O -0.487 6.487 8 O -0.282 6.282 9 C 0.086 3.914 10 C -0.232 4.232 11 C -0.191 4.191 12 C -0.238 4.238 13 C 0.025 3.975 14 C -0.058 4.058 15 H 0.054 0.946 16 C -0.194 4.194 17 N -0.207 5.207 18 C -0.088 4.088 19 C 0.199 3.801 20 O -0.512 6.512 21 N -0.207 5.207 22 C -0.461 4.461 23 H 0.091 0.909 24 C -0.210 4.210 25 N -0.558 5.558 26 Si 0.811 3.189 27 H -0.196 1.196 28 H -0.194 1.194 29 H -0.202 1.202 30 H 0.107 0.893 31 H 0.058 0.942 32 H 0.091 0.909 33 H 0.111 0.889 34 H 0.118 0.882 35 H 0.085 0.915 36 H 0.111 0.889 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.068 0.932 44 H 0.101 0.899 45 H 0.119 0.881 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.108 0.892 49 H 0.132 0.868 50 H 0.132 0.868 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.188 -12.583 -16.555 21.037 hybrid contribution 0.265 2.130 0.984 2.362 sum 3.453 -10.453 -15.570 19.069 Atomic orbital electron populations 1.21765 0.92142 1.03360 1.02098 1.22190 0.96865 0.96682 0.90303 0.94653 1.21922 0.77491 1.02206 0.97416 1.47143 1.07589 1.64005 1.14862 1.18121 0.83938 0.76673 0.80889 1.90845 1.13870 1.61693 1.82302 1.86296 1.41882 1.74945 1.25095 1.22446 0.89091 0.94990 0.84870 1.22431 1.00751 0.97181 1.02787 1.21875 1.00943 1.01652 0.94621 1.22479 1.00184 0.97947 1.03219 1.21769 0.98278 0.97843 0.79564 1.22162 0.88439 0.99030 0.96197 0.94647 1.21772 1.01733 1.01508 0.94391 1.62653 1.05879 1.51262 1.00951 1.22272 1.02466 0.88474 0.95569 1.22120 0.84076 0.91094 0.82774 1.90445 1.40949 1.75309 1.44457 1.42103 1.42041 1.08984 1.27547 1.19563 1.27022 0.86120 1.13416 0.90942 1.25956 0.95924 1.04137 0.94951 1.69660 1.30741 1.38539 1.16811 0.85019 0.78418 0.77521 0.77936 1.19630 1.19376 1.20245 0.89323 0.94150 0.90882 0.88926 0.88229 0.91470 0.88919 0.92122 0.91956 0.87710 0.90607 0.92412 0.88616 0.93224 0.89883 0.88140 0.91164 0.93715 0.89234 0.86818 0.86817 0.77029 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.48 71.98 0.61 -2.88 16 2 C 0.05 1.53 2.11 45.00 0.09 1.62 16 3 H 0.04 1.51 5.72 -2.39 -0.01 1.50 16 4 C 0.13 3.46 5.90 86.35 0.51 3.97 16 5 N -0.60 -18.02 3.01 -948.28 -2.85 -20.87 16 6 C 0.65 21.11 7.75 129.79 1.01 22.12 16 7 O -0.60 -21.45 11.33 19.82 0.22 -21.22 16 8 O -0.37 -10.55 8.57 -55.42 -0.47 -11.03 16 9 C 0.12 2.78 1.13 -10.79 -0.01 2.77 16 10 C -0.17 -3.55 8.37 71.98 0.60 -2.94 16 11 C -0.13 -2.09 8.85 71.98 0.64 -1.46 16 12 C -0.18 -4.49 8.37 71.98 0.60 -3.88 16 13 C 0.15 4.17 5.88 86.35 0.51 4.67 16 14 C 0.05 1.64 2.19 44.99 0.10 1.74 16 15 H 0.04 1.55 5.75 -2.39 -0.01 1.54 16 16 C -0.14 -3.59 8.47 71.98 0.61 -2.98 16 17 N -0.48 -14.68 4.52 -849.46 -3.84 -18.52 16 18 C 0.04 1.43 4.88 85.55 0.42 1.85 16 19 C 0.41 18.79 6.99 87.66 0.61 19.40 16 20 O -0.62 -33.16 11.25 -3.05 -0.03 -33.19 16 21 N -0.57 -28.66 5.29 -306.98 -1.62 -30.28 16 22 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 23 H 0.07 4.44 7.16 -2.91 -0.02 4.41 16 24 C -0.01 -0.51 5.50 84.93 0.47 -0.04 16 25 N -0.92 -49.09 13.05 21.67 0.28 -48.81 16 26 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 29 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 30 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.04 1.21 6.57 -2.39 -0.02 1.20 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.35 6.98 -2.39 -0.02 2.34 16 34 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.06 1.60 5.88 -2.39 -0.01 1.58 16 38 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 39 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.80 5.88 -2.39 -0.01 1.79 16 42 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.08 2.53 7.06 -2.39 -0.02 2.51 16 45 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.04 1.33 6.65 -2.38 -0.02 1.31 16 48 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.11 3.30 6.38 -2.38 -0.02 3.29 16 50 H 0.11 3.34 6.07 -2.39 -0.01 3.33 16 51 H 0.40 18.96 7.90 -92.70 -0.73 18.22 16 52 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 Total: -1.00 -70.74 394.61 1.48 -69.26 By element: Atomic # 1 Polarization: 43.17 SS G_CDS: 0.19 Total: 43.36 kcal Atomic # 6 Polarization: 18.47 SS G_CDS: 7.58 Total: 26.05 kcal Atomic # 7 Polarization: -110.45 SS G_CDS: -8.04 Total: -118.48 kcal Atomic # 8 Polarization: -65.16 SS G_CDS: -0.28 Total: -65.44 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -70.74 1.48 -69.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111289376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.700 kcal (2) G-P(sol) polarization free energy of solvation -70.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds