Wall clock time and date at job start Wed Apr 1 2020 01:31:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.62801 * 2 1 4 4 C 1.53245 * 109.62211 * 239.61655 * 2 1 3 5 5 N 1.46908 * 109.33469 * 186.45850 * 4 2 1 6 6 C 1.46896 * 110.99610 * 187.25058 * 5 4 2 7 7 C 1.50700 * 109.47147 * 170.00005 * 6 5 4 8 8 O 1.21298 * 119.99577 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00549 * 179.97438 * 7 6 5 10 10 C 1.37093 * 120.00503 * 179.97438 * 9 7 6 11 11 H 1.08001 * 119.99891 * 0.02562 * 10 9 7 12 12 C 1.38950 * 120.00391 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99759 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00159 * 180.02562 * 12 10 9 15 15 H 1.48496 * 109.47216 * 270.00029 * 14 12 10 16 16 H 1.48504 * 109.47197 * 30.00232 * 14 12 10 17 17 H 1.48499 * 109.47179 * 150.00286 * 14 12 10 18 18 C 1.46896 * 111.26770 * 63.10755 * 5 4 2 19 19 C 1.53248 * 109.34002 * 296.89013 * 18 5 4 20 20 H 1.08991 * 109.62706 * 294.12365 * 19 18 5 21 21 C 1.52993 * 109.78914 * 173.63525 * 19 18 5 22 22 N 1.47074 * 109.63082 * 120.58787 * 2 1 3 23 23 C 1.34780 * 120.88200 * 350.91519 * 22 2 1 24 24 O 1.21515 * 120.00160 * 185.27976 * 23 22 2 25 25 O 1.34637 * 120.00072 * 5.26932 * 23 22 2 26 26 C 1.45192 * 117.00145 * 180.02562 * 25 23 22 27 27 C 1.52999 * 109.46996 * 60.00652 * 26 25 23 28 28 C 1.53002 * 109.47315 * 180.02562 * 26 25 23 29 29 C 1.52997 * 109.47380 * 300.00554 * 26 25 23 30 30 H 1.08998 * 109.47405 * 185.07601 * 1 2 3 31 31 H 1.09003 * 109.46766 * 305.07264 * 1 2 3 32 32 H 1.08993 * 109.47550 * 65.07099 * 1 2 3 33 33 H 1.08997 * 109.49690 * 66.50285 * 4 2 1 34 34 H 1.08996 * 109.49312 * 306.41677 * 4 2 1 35 35 H 1.09005 * 109.46978 * 50.00471 * 6 5 4 36 36 H 1.08992 * 109.47642 * 290.00053 * 6 5 4 37 37 H 0.97005 * 120.00114 * 0.02562 * 9 7 6 38 38 H 0.97003 * 120.00460 * 359.97438 * 13 12 10 39 39 H 1.08997 * 109.49695 * 56.85182 * 18 5 4 40 40 H 1.09006 * 109.49404 * 176.93186 * 18 5 4 41 41 H 1.08997 * 109.47407 * 293.23748 * 21 19 18 42 42 H 1.09007 * 109.47101 * 53.24410 * 21 19 18 43 43 H 1.09005 * 109.47240 * 173.23780 * 21 19 18 44 44 H 1.09000 * 109.47172 * 59.99647 * 27 26 25 45 45 H 1.09005 * 109.47340 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.47059 * 299.99616 * 27 26 25 47 47 H 1.09004 * 109.46949 * 60.00251 * 28 26 25 48 48 H 1.08997 * 109.47496 * 179.97438 * 28 26 25 49 49 H 1.09000 * 109.47006 * 300.00448 * 28 26 25 50 50 H 1.08999 * 109.47258 * 60.00027 * 29 26 25 51 51 H 1.08997 * 109.47318 * 180.02562 * 29 26 25 52 52 H 1.09004 * 109.47070 * 299.99863 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0266 0.0000 4 6 2.0446 -0.7301 -1.2452 5 7 3.5054 -0.8624 -1.1625 6 6 4.0566 -1.4020 -2.4127 7 6 5.5595 -1.2950 -2.3864 8 8 6.1167 -0.8167 -1.4209 9 7 6.2847 -1.7316 -3.4351 10 6 7.6519 -1.6338 -3.4115 11 1 8.1480 -1.2072 -2.5522 12 6 8.3996 -2.0845 -4.4925 13 7 7.7961 -2.6041 -5.5378 14 14 10.2626 -1.9518 -4.4599 15 1 10.6761 -0.6471 -5.0359 16 1 10.7412 -2.0477 -3.0573 17 1 10.8515 -3.0553 -5.2604 18 6 3.9015 -1.6871 -0.0133 19 6 3.4629 -0.9963 1.2824 20 1 4.0177 -0.0665 1.4074 21 6 3.7274 -1.9169 2.4754 22 7 2.0241 -0.7049 1.1925 23 6 1.1807 -1.0745 2.1767 24 8 1.6172 -1.5695 3.1970 25 8 -0.1456 -0.8950 2.0295 26 6 -0.9939 -1.3158 3.1301 27 6 -0.6121 -0.5415 4.3932 28 6 -2.4572 -1.0354 2.7823 29 6 -0.8064 -2.8145 3.3745 30 1 -0.3634 -1.0236 0.0909 31 1 -0.3633 0.5905 0.8411 32 1 -0.3634 0.4331 -0.9318 33 1 1.7809 -0.1601 -2.1361 34 1 1.5922 -1.7202 -1.2993 35 1 3.6666 -0.8334 -3.2570 36 1 3.7686 -2.4482 -2.5151 37 1 5.8392 -2.1145 -4.2071 38 1 6.8287 -2.6733 -5.5546 39 1 3.4232 -2.6640 -0.0845 40 1 4.9845 -1.8113 -0.0108 41 1 3.0753 -2.7882 2.4135 42 1 4.7683 -2.2402 2.4611 43 1 3.5269 -1.3781 3.4015 44 1 -0.7456 0.5262 4.2191 45 1 -1.2486 -0.8577 5.2197 46 1 0.4304 -0.7416 4.6409 47 1 -2.7290 -1.5874 1.8825 48 1 -3.0941 -1.3517 3.6083 49 1 -2.5910 0.0322 2.6079 50 1 0.2360 -3.0147 3.6222 51 1 -1.4436 -3.1305 4.2004 52 1 -1.0784 -3.3662 2.4746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112998246.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:31:00 Heat of formation + Delta-G solvation = -101.037704 kcal Electronic energy + Delta-G solvation = -32137.587577 eV Core-core repulsion = 27944.818083 eV Total energy + Delta-G solvation = -4192.769493 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.27706 -40.72266 -39.64810 -38.02209 -36.61226 -35.94493 -35.05813 -34.06755 -33.13087 -30.73682 -29.20226 -28.30628 -28.22127 -27.69399 -26.63006 -25.13298 -23.39027 -22.77347 -21.62792 -21.35975 -20.41168 -19.93593 -18.40298 -18.06825 -17.73202 -17.17473 -16.96745 -16.65776 -16.54108 -16.05970 -15.71418 -15.60635 -15.42900 -15.29734 -15.25245 -14.71403 -14.49572 -14.21057 -13.94146 -13.71207 -13.67796 -13.33380 -13.15839 -13.09070 -13.04507 -12.89809 -12.79678 -12.69759 -12.63367 -12.45446 -12.38775 -12.23203 -12.05408 -11.96923 -11.94051 -11.86035 -11.51651 -11.45683 -11.14415 -10.43295 -10.37127 -10.08408 -9.77654 -9.31222 -8.90837 -6.04490 1.16591 1.52732 1.55332 1.80664 1.82137 2.02150 2.37042 2.59482 2.82247 3.16266 3.19640 3.70849 3.76039 3.83706 3.88029 3.93029 4.03458 4.05644 4.11493 4.18542 4.21143 4.33210 4.39723 4.48221 4.54314 4.61101 4.66146 4.66590 4.70267 4.79234 4.80681 4.81904 4.89604 4.94408 4.97854 5.01683 5.10621 5.15874 5.25342 5.33699 5.38547 5.38726 5.51555 5.56547 5.60104 5.81862 5.98287 6.04187 6.47281 6.59587 6.77144 7.34545 7.46342 7.95194 8.57052 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027696 B = 0.002348 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.740393 B =11922.300089 C =12445.108413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.142 3.858 3 H 0.083 0.917 4 C 0.047 3.953 5 N -0.532 5.532 6 C 0.059 3.941 7 C 0.445 3.555 8 O -0.606 6.606 9 N -0.588 5.588 10 C -0.405 4.405 11 H 0.073 0.927 12 C -0.043 4.043 13 N -0.919 5.919 14 Si 1.134 2.866 15 H -0.271 1.271 16 H -0.278 1.278 17 H -0.274 1.274 18 C 0.054 3.946 19 C 0.173 3.827 20 H 0.072 0.928 21 C -0.124 4.124 22 N -0.595 5.595 23 C 0.645 3.355 24 O -0.582 6.582 25 O -0.337 6.337 26 C 0.108 3.892 27 C -0.175 4.175 28 C -0.132 4.132 29 C -0.176 4.176 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.065 0.935 37 H 0.384 0.616 38 H 0.260 0.740 39 H 0.029 0.971 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.068 0.932 48 H 0.093 0.907 49 H 0.070 0.930 50 H 0.059 0.941 51 H 0.083 0.917 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.746 2.824 12.720 27.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.039 3.961 3 H 0.101 0.899 4 C -0.081 4.081 5 N -0.256 5.256 6 C -0.072 4.072 7 C 0.233 3.767 8 O -0.491 6.491 9 N -0.227 5.227 10 C -0.534 4.534 11 H 0.091 0.909 12 C -0.241 4.241 13 N -0.558 5.558 14 Si 0.954 3.046 15 H -0.196 1.196 16 H -0.204 1.204 17 H -0.199 1.199 18 C -0.075 4.075 19 C 0.070 3.930 20 H 0.090 0.910 21 C -0.181 4.181 22 N -0.336 5.336 23 C 0.402 3.598 24 O -0.473 6.473 25 O -0.252 6.252 26 C 0.071 3.929 27 C -0.233 4.233 28 C -0.189 4.189 29 C -0.233 4.233 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.130 0.870 34 H 0.060 0.940 35 H 0.137 0.863 36 H 0.083 0.917 37 H 0.218 0.782 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.102 0.898 46 H 0.078 0.922 47 H 0.087 0.913 48 H 0.112 0.888 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.102 0.898 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.755 3.134 12.908 25.490 hybrid contribution -1.464 -0.844 0.368 1.729 sum -23.219 2.291 13.276 26.844 Atomic orbital electron populations 1.22163 0.90334 1.03938 1.03249 1.21585 0.96533 0.95704 0.82259 0.89926 1.22716 0.85517 1.00360 0.99547 1.61465 1.11076 1.51272 1.01783 1.21741 0.90930 1.00308 0.94206 1.20728 0.90167 0.82356 0.83436 1.90479 1.73679 1.49736 1.35242 1.41997 1.06824 1.56185 1.17743 1.20506 0.83055 1.43349 1.06533 0.90902 1.27763 1.11721 0.93796 0.90862 1.70939 1.11134 1.43443 1.30316 0.82605 0.67784 0.77745 0.76430 1.19606 1.20351 1.19878 1.22526 1.01605 0.93369 0.90024 1.21139 0.78080 0.98864 0.94906 0.90999 1.22016 0.99949 0.99213 0.96962 1.47579 1.06597 1.59638 1.19807 1.18388 0.81541 0.77275 0.82624 1.90922 1.77266 1.49671 1.29425 1.87224 1.15383 1.78089 1.44471 1.22400 0.90668 0.94454 0.85329 1.22414 1.03358 1.00118 0.97375 1.21833 0.90228 1.03309 1.03481 1.22422 1.03582 0.94684 1.02644 0.91271 0.90198 0.88926 0.86992 0.94023 0.86281 0.91684 0.78203 0.92937 0.95287 0.90293 0.92738 0.93081 0.90509 0.92140 0.89845 0.92222 0.91277 0.88797 0.91050 0.92232 0.89817 0.92442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 7.54 71.98 0.54 -1.57 16 2 C 0.14 3.00 3.65 44.96 0.16 3.16 16 3 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 4 C 0.05 1.03 4.91 86.38 0.42 1.46 16 5 N -0.53 -16.60 4.37 -899.80 -3.93 -20.53 16 6 C 0.06 1.95 5.45 85.56 0.47 2.41 16 7 C 0.45 20.67 7.44 87.66 0.65 21.32 16 8 O -0.61 -32.81 13.91 -3.08 -0.04 -32.86 16 9 N -0.59 -29.45 5.28 -306.99 -1.62 -31.07 16 10 C -0.41 -22.98 9.68 84.04 0.81 -22.16 16 11 H 0.07 4.46 7.16 -2.91 -0.02 4.43 16 12 C -0.04 -2.35 5.50 84.93 0.47 -1.88 16 13 N -0.92 -51.06 13.68 21.66 0.30 -50.76 16 14 Si 1.13 48.69 29.92 68.60 2.05 50.74 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 16 H -0.28 -11.57 7.11 99.48 0.71 -10.86 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 C 0.05 1.79 4.56 86.39 0.39 2.18 16 19 C 0.17 5.23 3.64 44.96 0.16 5.39 16 20 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 21 C -0.12 -3.65 7.64 71.98 0.55 -3.10 16 22 N -0.59 -15.47 3.01 -900.50 -2.71 -18.18 16 23 C 0.65 16.67 7.40 129.79 0.96 17.63 16 24 O -0.58 -17.07 7.58 19.79 0.15 -16.92 16 25 O -0.34 -6.81 4.41 -55.46 -0.24 -7.06 16 26 C 0.11 1.79 1.13 -10.79 -0.01 1.77 16 27 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 28 C -0.13 -1.33 8.85 71.98 0.64 -0.69 16 29 C -0.18 -3.11 8.37 71.98 0.60 -2.50 16 30 H 0.07 1.15 6.72 -2.39 -0.02 1.13 16 31 H 0.08 1.25 6.59 -2.39 -0.02 1.23 16 32 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.11 1.95 7.99 -2.39 -0.02 1.93 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.12 3.27 7.97 -2.38 -0.02 3.25 16 36 H 0.07 1.95 8.12 -2.39 -0.02 1.93 16 37 H 0.38 17.62 6.73 -92.70 -0.62 17.00 16 38 H 0.26 13.90 6.78 -92.71 -0.63 13.27 16 39 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 3.26 5.76 -2.38 -0.01 3.24 16 41 H 0.05 1.67 6.99 -2.39 -0.02 1.65 16 42 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 43 H 0.08 2.33 6.57 -2.38 -0.02 2.32 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.06 1.39 5.88 -2.39 -0.01 1.38 16 47 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 48 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.06 1.42 5.88 -2.39 -0.01 1.40 16 51 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 52 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -70.68 392.62 1.81 -68.87 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.43 Total: 36.75 kcal Atomic # 6 Polarization: 13.60 SS G_CDS: 7.43 Total: 21.02 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -7.97 Total: -120.55 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -0.14 Total: -56.84 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.05 Total: 50.74 kcal Total: -70.68 1.81 -68.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112998246.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.166 kcal (2) G-P(sol) polarization free energy of solvation -70.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds