Wall clock time and date at job start Wed Apr 1 2020 00:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.46381 * 2 1 4 4 C 1.53044 * 109.46300 * 240.03123 * 2 1 3 5 5 C 1.53123 * 109.27926 * 180.80678 * 4 2 1 6 6 H 1.08996 * 109.57125 * 297.71526 * 5 4 2 7 7 N 1.46498 * 109.52051 * 177.56143 * 5 4 2 8 8 C 1.34773 * 120.00178 * 155.31957 * 7 5 4 9 9 O 1.21511 * 119.99677 * 359.97438 * 8 7 5 10 10 O 1.34631 * 120.00188 * 179.97438 * 8 7 5 11 11 C 1.45199 * 116.99991 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47242 * 59.99713 * 11 10 8 13 13 C 1.52997 * 109.47367 * 180.02562 * 11 10 8 14 14 C 1.52999 * 109.47468 * 300.00070 * 11 10 8 15 15 C 1.53116 * 109.15918 * 57.65314 * 5 4 2 16 16 C 1.53037 * 109.28004 * 302.34578 * 15 5 4 17 17 N 1.46839 * 109.52411 * 59.17992 * 16 15 5 18 18 C 1.46908 * 111.00090 * 174.15761 * 17 16 15 19 19 C 1.50693 * 109.47345 * 288.16091 * 18 17 16 20 20 O 1.21295 * 119.99887 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99945 * 179.97438 * 19 18 17 22 22 C 1.37096 * 120.00084 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00001 * 0.02562 * 22 21 19 24 24 C 1.38944 * 119.99966 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00477 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99775 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47408 * 90.00168 * 26 24 22 28 28 H 1.48508 * 109.47234 * 209.99820 * 26 24 22 29 29 H 1.48495 * 109.47447 * 329.99740 * 26 24 22 30 30 H 1.08999 * 109.47056 * 307.42267 * 1 2 3 31 31 H 1.09003 * 109.47274 * 187.42121 * 1 2 3 32 32 H 1.08999 * 109.46924 * 67.41943 * 1 2 3 33 33 H 1.08999 * 109.50159 * 300.74511 * 4 2 1 34 34 H 1.08995 * 109.49990 * 60.86586 * 4 2 1 35 35 H 0.97003 * 119.99989 * 335.30684 * 7 5 4 36 36 H 1.09007 * 109.46488 * 60.00340 * 12 11 10 37 37 H 1.09004 * 109.47305 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47350 * 300.00191 * 12 11 10 39 39 H 1.08999 * 109.47325 * 59.99876 * 13 11 10 40 40 H 1.09004 * 109.47632 * 180.02562 * 13 11 10 41 41 H 1.08998 * 109.46843 * 299.99973 * 13 11 10 42 42 H 1.09008 * 109.47180 * 59.99404 * 14 11 10 43 43 H 1.08996 * 109.47703 * 179.97438 * 14 11 10 44 44 H 1.09004 * 109.47014 * 300.00467 * 14 11 10 45 45 H 1.09000 * 109.50210 * 182.40193 * 15 5 4 46 46 H 1.09006 * 109.50538 * 62.28958 * 15 5 4 47 47 H 1.09001 * 109.46176 * 299.16093 * 16 15 5 48 48 H 1.09000 * 109.46338 * 179.19606 * 16 15 5 49 49 H 1.08998 * 109.46602 * 48.16684 * 18 17 16 50 50 H 1.08997 * 109.46900 * 168.15762 * 18 17 16 51 51 H 0.96998 * 119.99803 * 0.02562 * 21 19 18 52 52 H 0.96993 * 120.00662 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7208 -1.2501 5 6 3.5710 -0.7360 -1.2357 6 1 3.9466 0.2867 -1.2678 7 7 4.0641 -1.4754 -2.4002 8 6 5.2961 -1.2244 -2.8857 9 8 5.9975 -0.3843 -2.3578 10 8 5.7495 -1.9043 -3.9556 11 6 7.0852 -1.5812 -4.4244 12 6 8.0964 -1.8497 -3.3079 13 6 7.4233 -2.4483 -5.6387 14 6 7.1434 -0.1046 -4.8208 15 6 4.0547 -1.4189 0.0466 16 6 3.4864 -0.6778 1.2590 17 7 2.0193 -0.6918 1.1993 18 6 1.4373 -0.1108 2.4166 19 6 1.6330 -1.0607 3.5699 20 8 2.2018 -2.1177 3.3952 21 7 1.1769 -0.7355 4.7957 22 6 1.3554 -1.5995 5.8451 23 1 1.8619 -2.5406 5.6896 24 6 0.8847 -1.2644 7.1087 25 7 0.2688 -0.1191 7.2981 26 14 1.1285 -2.4414 8.5387 27 1 2.4179 -2.1421 9.2118 28 1 0.0151 -2.2801 9.5080 29 1 1.1464 -3.8375 8.0332 30 1 -0.3633 0.6245 0.8161 31 1 -0.3634 -1.0191 0.1327 32 1 -0.3633 0.3946 -0.9489 33 1 1.6659 -1.7446 -1.2578 34 1 1.6895 -0.1980 -2.1399 35 1 3.5041 -2.1459 -2.8218 36 1 8.0549 -2.9017 -3.0255 37 1 9.0992 -1.6076 -3.6599 38 1 7.8554 -1.2315 -2.4431 39 1 6.7029 -2.2566 -6.4339 40 1 8.4262 -2.2061 -5.9903 41 1 7.3817 -3.5004 -5.3567 42 1 6.9024 0.5136 -3.9559 43 1 8.1462 0.1381 -5.1722 44 1 6.4230 0.0868 -5.6161 45 1 5.1438 -1.3948 0.0830 46 1 3.7124 -2.4537 0.0592 47 1 3.8404 0.3531 1.2532 48 1 3.8174 -1.1701 2.1734 49 1 1.9294 0.8362 2.6382 50 1 0.3718 0.0606 2.2638 51 1 0.7223 0.1099 4.9355 52 1 -0.0594 0.1150 8.1803 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134668235.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:47 Heat of formation + Delta-G solvation = -142.691738 kcal Electronic energy + Delta-G solvation = -30811.005874 eV Core-core repulsion = 26616.430126 eV Total energy + Delta-G solvation = -4194.575748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.89019 -40.83710 -39.57371 -38.21648 -36.25856 -35.82648 -35.01626 -33.35969 -33.26162 -32.54291 -28.81388 -28.35064 -28.27650 -27.91516 -26.34387 -24.47538 -23.61278 -22.00965 -21.41088 -20.94471 -20.57309 -19.83563 -19.15774 -17.78793 -17.67656 -17.17416 -16.87101 -16.64868 -16.41706 -16.22724 -15.73811 -15.64342 -15.37558 -15.36402 -14.94811 -14.85307 -14.52073 -14.31544 -13.82748 -13.46565 -13.42006 -13.31235 -13.20604 -13.02600 -12.93307 -12.88740 -12.84004 -12.80860 -12.69880 -12.50123 -12.40256 -12.31615 -12.14614 -12.07709 -11.85712 -11.81053 -11.48475 -11.42353 -11.36428 -11.06253 -10.31488 -10.14473 -9.97118 -9.17071 -8.44354 -5.92502 1.16145 1.38186 1.41470 1.54162 1.77761 2.09738 2.29189 2.72890 3.13019 3.22340 3.41244 3.67627 3.77080 3.79746 3.83300 3.95324 3.96676 4.09173 4.27156 4.33635 4.42197 4.44357 4.44834 4.50944 4.56241 4.60279 4.62857 4.76173 4.77973 4.81332 4.85939 4.87670 4.89667 5.00565 5.01705 5.02557 5.11790 5.16012 5.24320 5.29621 5.31794 5.40542 5.42739 5.45170 5.60432 5.91875 6.10789 6.28661 6.43800 6.64089 7.16124 7.36893 7.60472 8.16971 8.73096 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.002057 C = 0.001934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.934906 B =13606.409080 C =14476.884992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.082 3.918 3 H 0.051 0.949 4 C -0.106 4.106 5 C 0.172 3.828 6 H 0.080 0.920 7 N -0.694 5.694 8 C 0.645 3.355 9 O -0.593 6.593 10 O -0.369 6.369 11 C 0.125 3.875 12 C -0.181 4.181 13 C -0.135 4.135 14 C -0.178 4.178 15 C -0.113 4.113 16 C 0.067 3.933 17 N -0.525 5.525 18 C 0.052 3.948 19 C 0.443 3.557 20 O -0.614 6.614 21 N -0.577 5.577 22 C -0.329 4.329 23 H 0.077 0.923 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.991 3.009 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.417 0.583 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.072 0.928 40 H 0.101 0.899 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.089 0.911 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.034 0.966 48 H 0.055 0.945 49 H 0.063 0.937 50 H 0.118 0.882 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 1.920 -26.968 27.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.026 4.026 3 H 0.068 0.932 4 C -0.144 4.144 5 C 0.068 3.932 6 H 0.098 0.902 7 N -0.353 5.353 8 C 0.399 3.601 9 O -0.484 6.484 10 O -0.283 6.283 11 C 0.088 3.912 12 C -0.239 4.239 13 C -0.192 4.192 14 C -0.236 4.236 15 C -0.152 4.152 16 C -0.062 4.062 17 N -0.251 5.251 18 C -0.078 4.078 19 C 0.230 3.770 20 O -0.499 6.499 21 N -0.215 5.215 22 C -0.459 4.459 23 H 0.095 0.905 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.108 0.892 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.136 0.864 51 H 0.229 0.771 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.706 1.211 -26.772 27.886 hybrid contribution 0.094 0.430 1.362 1.431 sum 7.799 1.641 -25.410 26.631 Atomic orbital electron populations 1.21930 0.92610 1.02597 1.03226 1.21705 0.96744 0.95494 0.88685 0.93152 1.21870 0.91555 1.03119 0.97877 1.20923 0.94895 0.95115 0.82219 0.90196 1.44763 1.14109 1.43886 1.32568 1.18299 0.82831 0.79718 0.79257 1.90901 1.57400 1.37362 1.62724 1.86309 1.36300 1.61712 1.44004 1.22401 0.77045 0.96700 0.95010 1.22484 0.99888 1.02207 0.99278 1.21879 1.03473 0.99377 0.94478 1.22462 1.03969 0.94751 1.02375 1.21830 0.99502 1.00250 0.93643 1.21911 0.87340 0.98232 0.98692 1.61511 1.06923 1.55522 1.01146 1.21823 1.02761 0.94482 0.88777 1.20843 0.82888 0.88895 0.84383 1.90479 1.47377 1.27617 1.84476 1.41941 1.52336 1.20025 1.07215 1.19621 1.36574 1.01458 0.88233 0.90484 1.26006 0.96105 0.98631 1.00673 1.69666 1.38834 1.22771 1.24958 0.84953 0.78186 0.78011 0.77334 1.19821 1.19503 1.19859 0.92203 0.92511 0.89245 0.89947 0.87802 0.74621 0.92275 0.89126 0.92208 0.90913 0.88036 0.91394 0.92086 0.89224 0.91660 0.92504 0.91658 0.94812 0.92642 0.91897 0.86402 0.77101 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.57 71.98 0.62 -2.16 16 2 C 0.08 1.82 2.44 44.94 0.11 1.93 16 3 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 4 C -0.11 -1.92 4.84 30.65 0.15 -1.77 16 5 C 0.17 3.82 2.52 45.07 0.11 3.93 16 6 H 0.08 1.95 7.58 -2.39 -0.02 1.94 16 7 N -0.69 -13.94 5.09 -569.77 -2.90 -16.84 16 8 C 0.65 15.66 8.02 129.79 1.04 16.70 16 9 O -0.59 -17.53 11.55 19.81 0.23 -17.30 16 10 O -0.37 -7.80 9.94 -55.40 -0.55 -8.35 16 11 C 0.12 2.14 1.13 -10.79 -0.01 2.12 16 12 C -0.18 -3.33 8.37 71.98 0.60 -2.72 16 13 C -0.14 -1.42 8.85 71.98 0.64 -0.79 16 14 C -0.18 -2.94 8.37 71.98 0.60 -2.34 16 15 C -0.11 -3.25 5.67 30.65 0.17 -3.07 16 16 C 0.07 2.22 5.11 86.33 0.44 2.66 16 17 N -0.53 -16.65 4.12 -875.66 -3.61 -20.26 16 18 C 0.05 1.83 5.26 85.55 0.45 2.28 16 19 C 0.44 21.32 7.47 87.65 0.65 21.97 16 20 O -0.61 -34.31 14.42 -3.08 -0.04 -34.35 16 21 N -0.58 -29.99 5.29 -306.99 -1.62 -31.61 16 22 C -0.33 -18.93 9.68 84.04 0.81 -18.12 16 23 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 25 N -0.92 -50.17 13.05 21.66 0.28 -49.89 16 26 Si 0.99 43.61 29.55 68.60 2.03 45.64 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 28 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 29 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 30 H 0.06 1.16 6.44 -2.39 -0.02 1.14 16 31 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.18 8.13 -2.39 -0.02 1.16 16 33 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.42 6.30 8.71 -92.71 -0.81 5.50 16 36 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.06 1.48 5.88 -2.39 -0.01 1.47 16 39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.06 1.38 5.88 -2.38 -0.01 1.36 16 43 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 45 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 47 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.06 2.32 6.34 -2.39 -0.02 2.30 16 49 H 0.06 2.02 8.05 -2.39 -0.02 2.00 16 50 H 0.12 3.56 5.55 -2.39 -0.01 3.55 16 51 H 0.40 19.49 7.90 -92.71 -0.73 18.75 16 52 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -72.34 406.07 0.06 -72.28 By element: Atomic # 1 Polarization: 41.01 SS G_CDS: -0.61 Total: 40.40 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 6.86 Total: 20.29 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -7.85 Total: -118.60 kcal Atomic # 8 Polarization: -59.63 SS G_CDS: -0.37 Total: -60.00 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -72.34 0.06 -72.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134668235.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.414 kcal (2) G-P(sol) polarization free energy of solvation -72.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds