Wall clock time and date at job start Wed Apr 1 2020 00:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.46559 * 2 1 4 4 C 1.53171 * 109.44182 * 119.93529 * 2 1 3 5 5 C 1.53119 * 109.20972 * 179.16384 * 4 2 1 6 6 H 1.09001 * 109.52844 * 182.43471 * 5 4 2 7 7 N 1.46505 * 109.52158 * 62.30706 * 5 4 2 8 8 C 1.34772 * 120.00092 * 155.12746 * 7 5 4 9 9 O 1.21519 * 120.00219 * 0.02562 * 8 7 5 10 10 O 1.34641 * 120.00361 * 180.02562 * 8 7 5 11 11 C 1.45197 * 117.00184 * 180.02562 * 10 8 7 12 12 C 1.53004 * 109.47174 * 59.99747 * 11 10 8 13 13 C 1.52995 * 109.47309 * 300.00004 * 11 10 8 14 14 C 1.53001 * 109.47273 * 179.97438 * 11 10 8 15 15 C 1.53122 * 109.21202 * 302.37555 * 5 4 2 16 16 C 1.53043 * 109.27785 * 57.68397 * 15 5 4 17 17 N 1.46843 * 109.46293 * 240.01573 * 2 1 3 18 18 C 1.46902 * 111.00261 * 54.14496 * 17 2 1 19 19 C 1.50699 * 109.47434 * 199.70990 * 18 17 2 20 20 O 1.21292 * 119.99710 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99567 * 180.02562 * 19 18 17 22 22 C 1.37105 * 119.99421 * 180.02562 * 21 19 18 23 23 H 1.07997 * 120.00252 * 359.97438 * 22 21 19 24 24 C 1.38949 * 119.99798 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99988 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 120.00225 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46923 * 89.99744 * 26 24 22 28 28 H 1.48495 * 109.47295 * 210.00431 * 26 24 22 29 29 H 1.48502 * 109.46955 * 330.00554 * 26 24 22 30 30 H 1.08998 * 109.47503 * 171.87124 * 1 2 3 31 31 H 1.09007 * 109.47132 * 291.87425 * 1 2 3 32 32 H 1.08999 * 109.47191 * 51.87043 * 1 2 3 33 33 H 1.09003 * 109.49067 * 59.27534 * 4 2 1 34 34 H 1.09008 * 109.59156 * 299.11384 * 4 2 1 35 35 H 0.97001 * 120.00147 * 335.13650 * 7 5 4 36 36 H 1.09001 * 109.47373 * 300.00155 * 12 11 10 37 37 H 1.08999 * 109.46972 * 59.99952 * 12 11 10 38 38 H 1.08993 * 109.46935 * 179.97438 * 12 11 10 39 39 H 1.08997 * 109.47621 * 180.02562 * 13 11 10 40 40 H 1.09009 * 109.46813 * 300.00131 * 13 11 10 41 41 H 1.08997 * 109.47325 * 59.99634 * 13 11 10 42 42 H 1.08999 * 109.47023 * 300.00140 * 14 11 10 43 43 H 1.09000 * 109.46902 * 59.99682 * 14 11 10 44 44 H 1.08994 * 109.47378 * 180.02562 * 14 11 10 45 45 H 1.08999 * 109.50106 * 177.62440 * 15 5 4 46 46 H 1.09000 * 109.50123 * 297.74299 * 15 5 4 47 47 H 1.09000 * 109.46292 * 60.83454 * 16 15 5 48 48 H 1.08998 * 109.46077 * 180.81851 * 16 15 5 49 49 H 1.08999 * 109.46786 * 319.71585 * 18 17 2 50 50 H 1.09002 * 109.46679 * 79.71079 * 18 17 2 51 51 H 0.96993 * 120.00406 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99544 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7208 1.2517 5 6 3.5708 -0.7360 1.2358 6 1 3.9387 -1.2854 2.1023 7 7 4.0745 0.6391 1.2780 8 6 5.3054 0.8912 1.7656 9 8 5.9977 -0.0221 2.1698 10 8 5.7682 2.1550 1.8049 11 6 7.1026 2.3519 2.3422 12 6 8.1124 1.5704 1.4993 13 6 7.1495 1.8519 3.7874 14 6 7.4526 3.8409 2.3056 15 6 4.0547 -1.4190 -0.0464 16 6 3.4864 -0.6780 -1.2589 17 7 2.0192 -0.6919 -1.1992 18 6 1.4373 -0.1110 -2.4165 19 6 1.5529 -1.0983 -3.5492 20 8 2.0689 -2.1797 -3.3608 21 7 1.0829 -0.7795 -4.7715 22 6 1.1876 -1.6779 -5.8018 23 1 1.6470 -2.6408 -5.6341 24 6 0.7036 -1.3492 -7.0621 25 7 0.8044 -2.2101 -8.0498 26 14 -0.0904 0.3166 -7.3524 27 1 0.9474 1.2938 -7.7689 28 1 -1.1151 0.1971 -8.4206 29 1 -0.7346 0.7832 -6.0984 30 1 -0.3634 -1.0173 -0.1453 31 1 -0.3634 0.3829 0.9537 32 1 -0.3633 0.6345 -0.8084 33 1 1.6658 -1.7446 1.2595 34 1 1.6903 -0.1982 2.1422 35 1 3.5221 1.3681 0.9552 36 1 7.8633 0.5095 1.5249 37 1 8.0791 1.9266 0.4697 38 1 9.1141 1.7186 1.9024 39 1 8.1511 2.0002 4.1910 40 1 6.4300 2.4087 4.3880 41 1 6.9003 0.7911 3.8131 42 1 7.4193 4.1968 1.2759 43 1 6.7332 4.3980 2.9059 44 1 8.4544 3.9888 2.7086 45 1 5.1438 -1.3949 -0.0828 46 1 3.7123 -2.4537 -0.0590 47 1 3.8403 0.3530 -1.2531 48 1 3.8172 -1.1705 -2.1733 49 1 0.3865 0.1206 -2.2421 50 1 1.9727 0.8027 -2.6749 51 1 0.6706 0.0854 -4.9222 52 1 0.4661 -1.9806 -8.9295 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134668256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:52 Heat of formation + Delta-G solvation = -109.286767 kcal Electronic energy + Delta-G solvation = -31389.399791 eV Core-core repulsion = 27196.272592 eV Total energy + Delta-G solvation = -4193.127199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.06806 -39.77226 -38.17352 -37.11652 -35.01990 -34.26525 -33.87815 -32.34084 -31.71774 -31.39498 -27.74733 -27.70333 -27.63321 -26.88233 -24.54811 -23.29292 -22.74305 -21.34800 -20.37197 -19.32570 -19.16150 -18.43147 -18.23317 -16.72454 -16.34827 -16.19468 -15.64423 -15.52727 -15.11460 -14.95710 -14.81173 -14.59147 -14.22621 -13.99342 -13.77740 -13.51115 -13.25900 -12.97433 -12.79909 -12.59951 -12.52537 -12.43611 -12.18482 -12.16312 -12.05783 -11.99681 -11.92768 -11.76799 -11.68574 -11.54818 -11.32682 -11.09821 -11.02500 -10.69211 -10.58482 -10.56674 -10.21066 -10.18506 -9.95302 -9.52339 -9.27173 -8.55944 -8.14672 -7.92719 -6.28378 -3.79460 2.01265 2.71733 3.03288 3.07495 3.15806 3.78197 3.83008 3.96696 4.12102 4.43477 4.47763 4.53969 4.62257 4.64910 4.80637 4.87657 5.13995 5.16092 5.16939 5.22855 5.25189 5.28156 5.35417 5.39476 5.44969 5.49207 5.53553 5.58526 5.60187 5.65244 5.69597 5.69913 5.79468 5.84951 5.92806 5.96611 6.01130 6.02060 6.07658 6.18954 6.20555 6.31999 6.36940 6.44935 7.17252 7.28260 7.33645 7.61971 8.17986 8.24922 8.64062 8.98944 9.46037 9.88411 10.84969 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.002435 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.191962 B =11495.640418 C =12088.764089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 H 0.033 0.967 4 C -0.117 4.117 5 C 0.161 3.839 6 H 0.093 0.907 7 N -0.704 5.704 8 C 0.650 3.350 9 O -0.568 6.568 10 O -0.368 6.368 11 C 0.137 3.863 12 C -0.184 4.184 13 C -0.183 4.183 14 C -0.141 4.141 15 C -0.125 4.125 16 C 0.062 3.938 17 N -0.507 5.507 18 C 0.036 3.964 19 C 0.455 3.545 20 O -0.556 6.556 21 N -0.595 5.595 22 C -0.302 4.302 23 H 0.119 0.881 24 C 0.040 3.960 25 N -0.883 5.883 26 Si 0.879 3.121 27 H -0.272 1.272 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.402 0.598 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.023 0.977 48 H 0.092 0.908 49 H 0.095 0.905 50 H 0.048 0.952 51 H 0.369 0.631 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.914 13.577 23.204 27.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 H 0.051 0.949 4 C -0.155 4.155 5 C 0.058 3.942 6 H 0.111 0.889 7 N -0.364 5.364 8 C 0.403 3.597 9 O -0.457 6.457 10 O -0.283 6.283 11 C 0.100 3.900 12 C -0.241 4.241 13 C -0.240 4.240 14 C -0.198 4.198 15 C -0.164 4.164 16 C -0.066 4.066 17 N -0.232 5.232 18 C -0.095 4.095 19 C 0.240 3.760 20 O -0.437 6.437 21 N -0.235 5.235 22 C -0.431 4.431 23 H 0.137 0.863 24 C -0.163 4.163 25 N -0.524 5.524 26 Si 0.706 3.294 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.113 0.887 34 H 0.092 0.908 35 H 0.237 0.763 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.106 0.894 47 H 0.041 0.959 48 H 0.110 0.890 49 H 0.113 0.887 50 H 0.066 0.934 51 H 0.201 0.799 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.494 11.873 23.365 27.259 hybrid contribution -0.620 2.550 -0.761 2.732 sum 6.874 14.424 22.604 27.681 Atomic orbital electron populations 1.21959 0.94070 1.03358 1.01456 1.21630 0.95763 0.94744 0.90755 0.94894 1.21978 0.93126 1.03356 0.97031 1.21106 0.93676 0.79874 0.99569 0.88945 1.45001 1.14597 1.10694 1.66067 1.18112 0.82600 0.81581 0.77376 1.90895 1.57167 1.45185 1.52484 1.86299 1.35230 1.28384 1.78372 1.22044 0.78038 0.96373 0.93547 1.22520 0.98543 1.03334 0.99736 1.22511 1.02611 1.04449 0.94403 1.21862 1.02051 0.92533 1.03374 1.21978 1.00518 1.00799 0.93094 1.22077 0.86518 0.98014 0.99974 1.61496 1.07361 1.54178 1.00153 1.22013 1.01066 0.95734 0.90715 1.19684 0.84246 0.88993 0.83072 1.90555 1.46604 1.23977 1.82535 1.42225 1.55127 1.16765 1.09417 1.19417 1.37414 0.99416 0.86829 0.86318 1.25030 0.97914 0.97887 0.95427 1.69624 1.46165 1.34840 1.01739 0.86683 0.79952 0.84169 0.78629 1.19743 1.20237 1.19529 0.90992 0.92195 0.92321 0.88682 0.90833 0.76266 0.89245 0.92119 0.91219 0.91221 0.92310 0.89303 0.91444 0.91555 0.90173 0.91116 0.89363 0.95867 0.89005 0.88707 0.93398 0.79860 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.58 37.16 0.32 -1.19 16 2 C 0.08 0.87 2.29 -67.66 -0.15 0.71 16 3 H 0.03 0.33 6.64 -51.93 -0.34 -0.01 16 4 C -0.12 -1.11 5.04 -26.58 -0.13 -1.24 16 5 C 0.16 1.73 2.80 -67.80 -0.19 1.54 16 6 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 7 N -0.70 -7.39 4.35 -58.60 -0.25 -7.65 16 8 C 0.65 7.91 8.02 54.05 0.43 8.34 16 9 O -0.57 -7.99 11.55 -19.29 -0.22 -8.21 16 10 O -0.37 -4.13 9.94 -40.33 -0.40 -4.53 16 11 C 0.14 1.27 1.13 -90.62 -0.10 1.17 16 12 C -0.18 -1.75 8.37 37.16 0.31 -1.44 16 13 C -0.18 -1.59 8.37 37.15 0.31 -1.28 16 14 C -0.14 -0.95 8.85 37.16 0.33 -0.62 16 15 C -0.13 -1.64 5.76 -26.65 -0.15 -1.80 16 16 C 0.06 0.93 4.97 -3.83 -0.02 0.91 16 17 N -0.51 -7.54 4.06 -228.04 -0.92 -8.46 16 18 C 0.04 0.58 5.31 -4.98 -0.03 0.56 16 19 C 0.45 10.19 7.49 -10.99 -0.08 10.10 16 20 O -0.56 -14.69 14.73 5.55 0.08 -14.61 16 21 N -0.60 -14.10 5.09 -10.96 -0.06 -14.16 16 22 C -0.30 -8.53 10.16 -14.93 -0.15 -8.68 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 24 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 25 N -0.88 -25.90 13.96 55.50 0.77 -25.13 16 26 Si 0.88 19.38 27.74 -169.99 -4.71 14.66 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 29 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 32 H 0.06 0.58 6.41 -51.93 -0.33 0.25 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.40 3.72 7.12 -40.82 -0.29 3.42 16 36 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 41 H 0.09 0.98 5.88 -51.93 -0.31 0.67 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 47 H 0.02 0.33 7.69 -51.93 -0.40 -0.07 16 48 H 0.09 1.71 6.69 -51.93 -0.35 1.36 16 49 H 0.09 1.35 5.43 -51.93 -0.28 1.07 16 50 H 0.05 0.70 8.00 -51.93 -0.42 0.29 16 51 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 52 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -33.24 399.38 -7.81 -41.05 By element: Atomic # 1 Polarization: 21.63 SS G_CDS: -8.70 Total: 12.93 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 0.59 Total: 8.08 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: -0.46 Total: -55.39 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.54 Total: -27.34 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.71 Total: 14.66 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.24 -7.81 -41.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134668256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.237 kcal (2) G-P(sol) polarization free energy of solvation -33.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds