Wall clock time and date at job start Wed Apr 1 2020 00:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.45659 * 2 1 4 4 C 1.53042 * 109.46031 * 240.02387 * 2 1 3 5 5 C 1.53119 * 109.27405 * 180.80852 * 4 2 1 6 6 H 1.09005 * 109.52406 * 177.56587 * 5 4 2 7 7 N 1.46502 * 109.52323 * 297.74607 * 5 4 2 8 8 C 1.34776 * 120.00252 * 204.68418 * 7 5 4 9 9 O 1.21513 * 119.99832 * 0.02562 * 8 7 5 10 10 O 1.34633 * 119.99981 * 180.02562 * 8 7 5 11 11 C 1.45209 * 117.00123 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46550 * 59.99682 * 11 10 8 13 13 C 1.53000 * 109.47093 * 179.97438 * 11 10 8 14 14 C 1.52997 * 109.46963 * 299.99995 * 11 10 8 15 15 C 1.53119 * 109.16425 * 57.65333 * 5 4 2 16 16 C 1.53027 * 109.27936 * 302.34815 * 15 5 4 17 17 N 1.46845 * 109.45832 * 119.97589 * 2 1 3 18 18 C 1.46905 * 111.00041 * 305.85091 * 17 2 1 19 19 C 1.50696 * 109.46937 * 301.83950 * 18 17 2 20 20 O 1.21292 * 120.00259 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99757 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99968 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99990 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99673 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00253 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99496 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47117 * 90.00546 * 26 24 22 28 28 H 1.48499 * 109.47026 * 209.99979 * 26 24 22 29 29 H 1.48496 * 109.47474 * 330.00015 * 26 24 22 30 30 H 1.08997 * 109.46837 * 300.03125 * 1 2 3 31 31 H 1.09002 * 109.46688 * 60.02532 * 1 2 3 32 32 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.50156 * 60.87126 * 4 2 1 34 34 H 1.08994 * 109.50191 * 300.74940 * 4 2 1 35 35 H 0.97005 * 119.99811 * 24.69255 * 7 5 4 36 36 H 1.08996 * 109.47106 * 60.00940 * 12 11 10 37 37 H 1.09004 * 109.46170 * 180.02562 * 12 11 10 38 38 H 1.08994 * 109.47445 * 299.99684 * 12 11 10 39 39 H 1.09001 * 109.46994 * 60.00087 * 13 11 10 40 40 H 1.09001 * 109.46711 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.47265 * 299.99945 * 13 11 10 42 42 H 1.09005 * 109.47088 * 59.99397 * 14 11 10 43 43 H 1.08995 * 109.47047 * 179.97438 * 14 11 10 44 44 H 1.09001 * 109.47059 * 299.99874 * 14 11 10 45 45 H 1.08995 * 109.50364 * 182.40221 * 15 5 4 46 46 H 1.09005 * 109.52730 * 62.30768 * 15 5 4 47 47 H 1.09005 * 109.46527 * 299.15813 * 16 15 5 48 48 H 1.09000 * 109.46216 * 179.19248 * 16 15 5 49 49 H 1.09000 * 109.46710 * 181.84075 * 18 17 2 50 50 H 1.08996 * 109.46646 * 61.83695 * 18 17 2 51 51 H 0.97004 * 120.00305 * 0.28432 * 21 19 18 52 52 H 0.96996 * 119.99717 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 6 3.5709 -0.7362 -1.2355 6 1 3.9380 -1.2864 -2.1020 7 7 4.0746 0.6389 -1.2781 8 6 5.3066 0.8906 -1.7632 9 8 5.9994 -0.0229 -2.1658 10 8 5.7696 2.1542 -1.8019 11 6 7.1048 2.3510 -2.3377 12 6 7.1531 1.8510 -3.7829 13 6 7.4545 3.8401 -2.3017 14 6 8.1133 1.5692 -1.4936 15 6 4.0547 -1.4189 0.0468 16 6 3.4864 -0.6778 1.2591 17 7 2.0192 -0.6918 1.1994 18 6 1.4372 -0.1106 2.4166 19 6 1.7792 1.3554 2.4863 20 8 2.4429 1.8658 1.6087 21 7 1.3476 2.0995 3.5239 22 6 1.6592 3.4331 3.5876 23 1 2.2502 3.8875 2.8062 24 6 1.2147 4.2000 4.6577 25 7 0.4960 3.6470 5.6087 26 14 1.6386 6.0172 4.7441 27 1 0.5811 6.8052 4.0614 28 1 1.7291 6.4373 6.1655 29 1 2.9426 6.2537 4.0741 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6895 -0.1982 -2.1399 34 1 1.6658 -1.7447 -1.2576 35 1 3.5215 1.3682 -0.9570 36 1 6.4346 2.4080 -4.3842 37 1 8.1555 1.9983 -4.1849 38 1 6.9039 0.7902 -3.8089 39 1 7.4199 4.1966 -1.2722 40 1 8.4569 3.9876 -2.7034 41 1 6.7359 4.3967 -2.9033 42 1 7.8640 0.5084 -1.5195 43 1 9.1155 1.7165 -1.8960 44 1 8.0789 1.9254 -0.4640 45 1 5.1438 -1.3948 0.0833 46 1 3.7129 -2.4539 0.0598 47 1 3.8403 0.3532 1.2533 48 1 3.8174 -1.1700 2.1736 49 1 1.8412 -0.6200 3.2914 50 1 0.3541 -0.2303 2.3943 51 1 0.8203 1.6904 4.2279 52 1 0.1861 4.1823 6.3558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134668274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:56 Heat of formation + Delta-G solvation = -117.264841 kcal Electronic energy + Delta-G solvation = -32368.706553 eV Core-core repulsion = 28175.233398 eV Total energy + Delta-G solvation = -4193.473155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.78089 -39.77839 -37.95961 -36.70496 -34.71335 -34.05758 -33.73660 -32.11472 -31.44517 -31.06787 -27.45879 -27.44982 -27.40773 -26.58525 -24.58988 -23.07814 -22.46388 -21.20011 -20.06059 -19.44264 -18.80378 -18.06361 -17.80186 -16.48388 -16.03748 -15.96744 -15.50011 -15.24297 -15.08053 -14.70619 -14.56575 -14.39563 -14.13907 -13.87733 -13.74989 -13.48985 -13.05865 -12.79808 -12.52069 -12.29549 -12.20188 -12.15770 -11.91895 -11.88336 -11.78946 -11.66506 -11.65681 -11.48319 -11.31545 -11.28116 -11.16606 -11.04847 -10.52243 -10.45115 -10.40739 -10.30216 -10.28581 -9.95139 -9.90421 -9.49049 -9.21394 -8.92079 -8.03086 -7.38217 -6.48597 -3.89944 2.36317 3.03345 3.11702 3.21799 3.27190 3.79483 4.11816 4.24117 4.35521 4.68925 4.73238 4.83855 4.87205 4.92642 5.04543 5.14949 5.20811 5.40019 5.40853 5.47557 5.52546 5.62198 5.64300 5.68236 5.73943 5.77544 5.80056 5.81368 5.87227 5.93740 5.96370 6.00590 6.06348 6.13190 6.19370 6.21336 6.22310 6.25042 6.34225 6.43246 6.55241 6.60170 6.75650 6.78404 7.38839 7.48069 7.50798 7.67853 7.98066 8.52114 8.59350 9.09815 9.46156 9.96131 10.67824 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.003736 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.057202 B = 7492.977964 C = 9655.040025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.054 3.946 3 H 0.093 0.907 4 C -0.117 4.117 5 C 0.165 3.835 6 H 0.087 0.913 7 N -0.698 5.698 8 C 0.652 3.348 9 O -0.580 6.580 10 O -0.362 6.362 11 C 0.136 3.864 12 C -0.182 4.182 13 C -0.142 4.142 14 C -0.183 4.183 15 C -0.125 4.125 16 C 0.042 3.958 17 N -0.507 5.507 18 C 0.037 3.963 19 C 0.408 3.592 20 O -0.594 6.594 21 N -0.556 5.556 22 C -0.302 4.302 23 H 0.103 0.897 24 C 0.025 3.975 25 N -0.898 5.898 26 Si 0.928 3.072 27 H -0.278 1.278 28 H -0.283 1.283 29 H -0.270 1.270 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.414 0.586 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.088 0.912 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.070 0.930 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.092 0.908 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.614 -7.069 -13.194 16.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.054 4.054 3 H 0.110 0.890 4 C -0.155 4.155 5 C 0.061 3.939 6 H 0.105 0.895 7 N -0.358 5.358 8 C 0.405 3.595 9 O -0.471 6.471 10 O -0.277 6.277 11 C 0.099 3.901 12 C -0.239 4.239 13 C -0.199 4.199 14 C -0.240 4.240 15 C -0.163 4.163 16 C -0.086 4.086 17 N -0.231 5.231 18 C -0.094 4.094 19 C 0.194 3.806 20 O -0.482 6.482 21 N -0.190 5.190 22 C -0.432 4.432 23 H 0.121 0.879 24 C -0.177 4.177 25 N -0.539 5.539 26 Si 0.755 3.245 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.251 0.749 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.106 0.894 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.094 0.906 47 H 0.088 0.912 48 H 0.082 0.918 49 H 0.104 0.896 50 H 0.110 0.890 51 H 0.226 0.774 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.210 -7.535 -13.841 17.330 hybrid contribution -0.124 1.862 0.955 2.096 sum 7.086 -5.673 -12.886 15.762 Atomic orbital electron populations 1.21852 0.94977 1.01513 1.01795 1.21985 0.94990 0.99329 0.89065 0.88992 1.21947 0.93103 1.02350 0.98098 1.20960 0.93804 0.80368 0.98726 0.89543 1.45011 1.14528 1.10874 1.65402 1.18105 0.82661 0.81488 0.77227 1.90843 1.57522 1.45228 1.53463 1.86365 1.34728 1.28365 1.78206 1.22001 0.78365 0.96330 0.93375 1.22508 1.02381 1.04387 0.94611 1.21861 1.01786 0.92672 1.03585 1.22507 0.98380 1.03258 0.99871 1.21969 1.00393 0.99699 0.94282 1.22188 0.87729 1.01442 0.97231 1.62453 1.07283 1.52166 1.01218 1.22104 1.01208 0.92255 0.93876 1.21069 0.85739 0.89144 0.84640 1.90344 1.44147 1.73749 1.39942 1.42063 1.46626 1.09508 1.20851 1.19705 1.31492 0.84270 1.07686 0.87948 1.25275 0.96525 1.00576 0.95369 1.69607 1.35854 1.37279 1.11135 0.85885 0.79112 0.82081 0.77395 1.20355 1.20874 1.19433 0.92325 0.92755 0.92515 0.91222 0.89822 0.74869 0.92333 0.91433 0.89371 0.91294 0.90386 0.91522 0.89353 0.91458 0.92078 0.91411 0.90576 0.91202 0.91802 0.89625 0.88993 0.77425 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 8.76 37.16 0.33 -1.65 16 2 C 0.05 0.81 1.79 -67.72 -0.12 0.69 16 3 H 0.09 1.68 3.86 -51.93 -0.20 1.48 16 4 C -0.12 -1.44 5.04 -26.65 -0.13 -1.57 16 5 C 0.16 2.21 2.80 -67.81 -0.19 2.02 16 6 H 0.09 1.14 7.59 -51.93 -0.39 0.74 16 7 N -0.70 -10.55 4.35 -58.61 -0.25 -10.81 16 8 C 0.65 10.42 8.02 54.05 0.43 10.86 16 9 O -0.58 -9.66 11.55 -19.28 -0.22 -9.89 16 10 O -0.36 -5.67 9.94 -40.31 -0.40 -6.07 16 11 C 0.14 1.71 1.13 -90.62 -0.10 1.61 16 12 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 13 C -0.14 -1.46 8.85 37.16 0.33 -1.13 16 14 C -0.18 -2.24 8.37 37.16 0.31 -1.93 16 15 C -0.12 -1.71 5.76 -26.66 -0.15 -1.86 16 16 C 0.04 0.67 4.95 -3.84 -0.02 0.65 16 17 N -0.51 -7.86 4.69 -228.12 -1.07 -8.93 16 18 C 0.04 0.63 5.30 -4.97 -0.03 0.60 16 19 C 0.41 8.83 7.04 -10.99 -0.08 8.75 16 20 O -0.59 -14.03 11.20 5.55 0.06 -13.97 16 21 N -0.56 -13.38 5.29 -10.96 -0.06 -13.43 16 22 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 23 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 24 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 25 N -0.90 -23.87 13.05 55.50 0.72 -23.15 16 26 Si 0.93 20.64 29.55 -169.99 -5.02 15.62 16 27 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 30 H 0.06 0.90 6.24 -51.93 -0.32 0.58 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.41 6.78 7.12 -40.82 -0.29 6.49 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.25 5.88 -51.93 -0.31 0.95 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 47 H 0.07 1.35 5.54 -51.93 -0.29 1.06 16 48 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 49 H 0.09 1.35 8.06 -51.93 -0.42 0.93 16 50 H 0.09 1.43 6.32 -51.93 -0.33 1.10 16 51 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 52 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -29.01 396.09 -8.23 -37.24 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -8.60 Total: 19.81 kcal Atomic # 6 Polarization: 6.96 SS G_CDS: 0.65 Total: 7.61 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: -0.66 Total: -56.32 kcal Atomic # 8 Polarization: -29.36 SS G_CDS: -0.56 Total: -29.92 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.01 -8.23 -37.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134668274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.021 kcal (2) G-P(sol) polarization free energy of solvation -29.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds