Wall clock time and date at job start Wed Apr 1 2020 00:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.45659 * 2 1 4 4 C 1.53042 * 109.46031 * 240.02387 * 2 1 3 5 5 C 1.53119 * 109.27405 * 180.80852 * 4 2 1 6 6 H 1.09005 * 109.52406 * 177.56587 * 5 4 2 7 7 N 1.46502 * 109.52323 * 297.74607 * 5 4 2 8 8 C 1.34776 * 120.00252 * 204.68418 * 7 5 4 9 9 O 1.21513 * 119.99832 * 0.02562 * 8 7 5 10 10 O 1.34633 * 119.99981 * 180.02562 * 8 7 5 11 11 C 1.45209 * 117.00123 * 180.02562 * 10 8 7 12 12 C 1.53002 * 109.46550 * 59.99682 * 11 10 8 13 13 C 1.53000 * 109.47093 * 179.97438 * 11 10 8 14 14 C 1.52997 * 109.46963 * 299.99995 * 11 10 8 15 15 C 1.53119 * 109.16425 * 57.65333 * 5 4 2 16 16 C 1.53027 * 109.27936 * 302.34815 * 15 5 4 17 17 N 1.46845 * 109.45832 * 119.97589 * 2 1 3 18 18 C 1.46905 * 111.00041 * 305.85091 * 17 2 1 19 19 C 1.50696 * 109.46937 * 301.83950 * 18 17 2 20 20 O 1.21292 * 120.00259 * 359.97438 * 19 18 17 21 21 N 1.34777 * 119.99757 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99968 * 179.97438 * 21 19 18 23 23 H 1.07999 * 119.99990 * 0.02562 * 22 21 19 24 24 C 1.38951 * 119.99673 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00253 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99496 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47117 * 90.00546 * 26 24 22 28 28 H 1.48499 * 109.47026 * 209.99979 * 26 24 22 29 29 H 1.48496 * 109.47474 * 330.00015 * 26 24 22 30 30 H 1.08997 * 109.46837 * 300.03125 * 1 2 3 31 31 H 1.09002 * 109.46688 * 60.02532 * 1 2 3 32 32 H 1.09001 * 109.47394 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.50156 * 60.87126 * 4 2 1 34 34 H 1.08994 * 109.50191 * 300.74940 * 4 2 1 35 35 H 0.97005 * 119.99811 * 24.69255 * 7 5 4 36 36 H 1.08996 * 109.47106 * 60.00940 * 12 11 10 37 37 H 1.09004 * 109.46170 * 180.02562 * 12 11 10 38 38 H 1.08994 * 109.47445 * 299.99684 * 12 11 10 39 39 H 1.09001 * 109.46994 * 60.00087 * 13 11 10 40 40 H 1.09001 * 109.46711 * 179.97438 * 13 11 10 41 41 H 1.09002 * 109.47265 * 299.99945 * 13 11 10 42 42 H 1.09005 * 109.47088 * 59.99397 * 14 11 10 43 43 H 1.08995 * 109.47047 * 179.97438 * 14 11 10 44 44 H 1.09001 * 109.47059 * 299.99874 * 14 11 10 45 45 H 1.08995 * 109.50364 * 182.40221 * 15 5 4 46 46 H 1.09005 * 109.52730 * 62.30768 * 15 5 4 47 47 H 1.09005 * 109.46527 * 299.15813 * 16 15 5 48 48 H 1.09000 * 109.46216 * 179.19248 * 16 15 5 49 49 H 1.09000 * 109.46710 * 181.84075 * 18 17 2 50 50 H 1.08996 * 109.46646 * 61.83695 * 18 17 2 51 51 H 0.97004 * 120.00305 * 0.28432 * 21 19 18 52 52 H 0.96996 * 119.99717 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2500 5 6 3.5709 -0.7362 -1.2355 6 1 3.9380 -1.2864 -2.1020 7 7 4.0746 0.6389 -1.2781 8 6 5.3066 0.8906 -1.7632 9 8 5.9994 -0.0229 -2.1658 10 8 5.7696 2.1542 -1.8019 11 6 7.1048 2.3510 -2.3377 12 6 7.1531 1.8510 -3.7829 13 6 7.4545 3.8401 -2.3017 14 6 8.1133 1.5692 -1.4936 15 6 4.0547 -1.4189 0.0468 16 6 3.4864 -0.6778 1.2591 17 7 2.0192 -0.6918 1.1994 18 6 1.4372 -0.1106 2.4166 19 6 1.7792 1.3554 2.4863 20 8 2.4429 1.8658 1.6087 21 7 1.3476 2.0995 3.5239 22 6 1.6592 3.4331 3.5876 23 1 2.2502 3.8875 2.8062 24 6 1.2147 4.2000 4.6577 25 7 0.4960 3.6470 5.6087 26 14 1.6386 6.0172 4.7441 27 1 0.5811 6.8052 4.0614 28 1 1.7291 6.4373 6.1655 29 1 2.9426 6.2537 4.0741 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5135 -0.8902 32 1 -0.3634 -1.0277 0.0005 33 1 1.6895 -0.1982 -2.1399 34 1 1.6658 -1.7447 -1.2576 35 1 3.5215 1.3682 -0.9570 36 1 6.4346 2.4080 -4.3842 37 1 8.1555 1.9983 -4.1849 38 1 6.9039 0.7902 -3.8089 39 1 7.4199 4.1966 -1.2722 40 1 8.4569 3.9876 -2.7034 41 1 6.7359 4.3967 -2.9033 42 1 7.8640 0.5084 -1.5195 43 1 9.1155 1.7165 -1.8960 44 1 8.0789 1.9254 -0.4640 45 1 5.1438 -1.3948 0.0833 46 1 3.7129 -2.4539 0.0598 47 1 3.8403 0.3532 1.2533 48 1 3.8174 -1.1700 2.1736 49 1 1.8412 -0.6200 3.2914 50 1 0.3541 -0.2303 2.3943 51 1 0.8203 1.6904 4.2279 52 1 0.1861 4.1823 6.3558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134668274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:55 Heat of formation + Delta-G solvation = -137.486102 kcal Electronic energy + Delta-G solvation = -32369.583412 eV Core-core repulsion = 28175.233398 eV Total energy + Delta-G solvation = -4194.350014 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.97414 -41.14607 -39.43059 -37.97707 -36.17422 -35.58232 -34.98026 -33.35224 -33.24768 -32.37928 -28.84760 -28.36447 -28.31452 -27.85773 -26.33664 -24.30159 -23.67956 -22.45832 -21.14623 -21.06606 -20.23548 -19.62307 -19.19377 -17.81163 -17.43164 -17.20850 -16.81563 -16.59805 -16.44857 -16.16187 -15.89386 -15.72037 -15.49640 -15.38509 -15.00098 -14.57192 -14.38809 -14.24781 -13.54552 -13.53105 -13.39563 -13.26712 -13.14517 -13.00710 -12.93317 -12.88298 -12.86860 -12.73547 -12.56869 -12.53190 -12.42566 -12.37698 -12.25878 -12.14291 -11.83432 -11.60507 -11.37968 -11.31468 -11.09475 -11.06598 -10.86669 -10.11300 -9.96203 -8.90334 -8.44909 -5.94334 1.27049 1.34811 1.39340 1.50998 1.80264 2.04810 2.28186 2.99208 3.20755 3.21347 3.29883 3.74211 3.76198 3.79400 3.84922 3.94492 4.04238 4.20916 4.40044 4.41305 4.47971 4.53965 4.60770 4.62407 4.66230 4.68675 4.70874 4.74707 4.80642 4.81638 4.84661 4.85946 4.95861 4.98061 5.04239 5.08499 5.13380 5.25815 5.27535 5.30701 5.31749 5.40132 5.45970 5.56095 5.63602 5.94370 6.11184 6.22178 6.43135 6.60468 7.13422 7.37138 7.58025 8.12451 8.70117 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009538 B = 0.003736 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2935.057202 B = 7492.977964 C = 9655.040025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 H 0.057 0.943 4 C -0.105 4.105 5 C 0.163 3.837 6 H 0.094 0.906 7 N -0.699 5.699 8 C 0.647 3.353 9 O -0.590 6.590 10 O -0.381 6.381 11 C 0.121 3.879 12 C -0.174 4.174 13 C -0.138 4.138 14 C -0.178 4.178 15 C -0.115 4.115 16 C 0.045 3.955 17 N -0.492 5.492 18 C 0.045 3.955 19 C 0.413 3.587 20 O -0.613 6.613 21 N -0.572 5.572 22 C -0.328 4.328 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.987 3.013 27 H -0.271 1.271 28 H -0.273 1.273 29 H -0.275 1.275 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.107 0.893 35 H 0.406 0.594 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.099 0.901 47 H 0.032 0.968 48 H 0.067 0.933 49 H 0.101 0.899 50 H 0.112 0.888 51 H 0.394 0.606 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.657 -7.881 -14.333 17.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 H 0.075 0.925 4 C -0.143 4.143 5 C 0.060 3.940 6 H 0.112 0.888 7 N -0.358 5.358 8 C 0.401 3.599 9 O -0.481 6.481 10 O -0.296 6.296 11 C 0.085 3.915 12 C -0.231 4.231 13 C -0.195 4.195 14 C -0.235 4.235 15 C -0.154 4.154 16 C -0.084 4.084 17 N -0.215 5.215 18 C -0.087 4.087 19 C 0.200 3.800 20 O -0.500 6.500 21 N -0.209 5.209 22 C -0.458 4.458 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.811 3.189 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.200 1.200 30 H 0.056 0.944 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.125 0.875 35 H 0.242 0.758 36 H 0.079 0.921 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.114 0.886 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.118 0.882 47 H 0.050 0.950 48 H 0.085 0.915 49 H 0.119 0.881 50 H 0.130 0.870 51 H 0.228 0.772 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.254 -8.370 -14.995 18.642 hybrid contribution -0.071 2.067 1.228 2.406 sum 7.183 -6.303 -13.767 16.759 Atomic orbital electron populations 1.21819 0.93763 1.02731 1.01366 1.21992 0.95958 0.97798 0.89909 0.92489 1.21904 0.91964 1.03454 0.97014 1.21117 0.94653 0.79537 0.98716 0.88780 1.45156 1.14224 1.11362 1.65025 1.18249 0.82826 0.81607 0.77263 1.90831 1.57772 1.45503 1.54017 1.86369 1.36456 1.28254 1.78509 1.22429 0.77106 0.97926 0.94034 1.22434 1.04046 1.02797 0.93846 1.21901 1.03541 0.90849 1.03224 1.22460 0.99905 1.01648 0.99515 1.21894 0.99524 1.00614 0.93330 1.22130 0.88030 0.99582 0.98620 1.62563 1.06824 1.51126 1.00942 1.22186 1.02638 0.88571 0.95314 1.22077 0.83855 0.90937 0.83159 1.90370 1.44383 1.74896 1.40376 1.42133 1.47891 1.08970 1.21891 1.19617 1.32420 0.85928 1.07810 0.90388 1.25962 0.96267 1.04128 0.94807 1.69668 1.36431 1.38530 1.11481 0.85017 0.78552 0.77612 0.77719 1.19661 1.19747 1.20015 0.94416 0.91632 0.90339 0.89962 0.87457 0.75777 0.92094 0.88751 0.91533 0.92349 0.87351 0.91356 0.91559 0.88594 0.93166 0.92626 0.88221 0.94973 0.91482 0.88060 0.87009 0.77240 0.91417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 8.76 71.98 0.63 -2.93 16 2 C 0.05 1.48 1.79 44.94 0.08 1.56 16 3 H 0.06 2.11 3.86 -2.39 -0.01 2.10 16 4 C -0.11 -2.36 5.04 30.65 0.15 -2.20 16 5 C 0.16 4.17 2.80 45.07 0.13 4.29 16 6 H 0.09 2.32 7.59 -2.38 -0.02 2.30 16 7 N -0.70 -21.46 4.35 -569.74 -2.48 -23.94 16 8 C 0.65 21.14 8.02 129.79 1.04 22.19 16 9 O -0.59 -19.88 11.55 19.80 0.23 -19.65 16 10 O -0.38 -12.25 9.94 -55.43 -0.55 -12.80 16 11 C 0.12 3.00 1.13 -10.79 -0.01 2.99 16 12 C -0.17 -3.76 8.37 71.98 0.60 -3.16 16 13 C -0.14 -2.68 8.85 71.98 0.64 -2.04 16 14 C -0.18 -4.31 8.37 71.98 0.60 -3.70 16 15 C -0.11 -3.02 5.76 30.64 0.18 -2.85 16 16 C 0.04 1.41 4.95 86.32 0.43 1.83 16 17 N -0.49 -14.55 4.69 -875.65 -4.11 -18.66 16 18 C 0.04 1.47 5.30 85.55 0.45 1.92 16 19 C 0.41 18.18 7.04 87.66 0.62 18.80 16 20 O -0.61 -29.98 11.20 -3.07 -0.03 -30.01 16 21 N -0.57 -28.27 5.29 -306.98 -1.62 -29.89 16 22 C -0.33 -18.13 9.68 84.04 0.81 -17.32 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 25 N -0.92 -49.26 13.05 21.66 0.28 -48.97 16 26 Si 0.99 42.75 29.55 68.60 2.03 44.77 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 30 H 0.04 1.11 6.24 -2.39 -0.01 1.10 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.41 13.83 7.12 -92.70 -0.66 13.17 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.07 1.75 5.88 -2.39 -0.01 1.74 16 39 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.91 5.88 -2.38 -0.01 1.89 16 43 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.10 2.18 8.14 -2.38 -0.02 2.16 16 47 H 0.03 1.28 5.54 -2.38 -0.01 1.26 16 48 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 49 H 0.10 3.06 8.06 -2.39 -0.02 3.04 16 50 H 0.11 3.30 6.32 -2.39 -0.02 3.28 16 51 H 0.39 18.83 7.90 -92.71 -0.73 18.09 16 52 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -64.82 396.09 0.11 -64.71 By element: Atomic # 1 Polarization: 55.68 SS G_CDS: -0.45 Total: 55.23 kcal Atomic # 6 Polarization: 12.39 SS G_CDS: 6.82 Total: 19.21 kcal Atomic # 7 Polarization: -113.53 SS G_CDS: -7.93 Total: -121.46 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: -0.36 Total: -62.46 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Total: -64.82 0.11 -64.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134668274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.777 kcal (2) G-P(sol) polarization free energy of solvation -64.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds