Wall clock time and date at job start Wed Apr 1 2020 00:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 113.99822 * 2 1 4 4 C 1.52995 * 109.46893 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.46918 * 65.00179 * 4 3 2 6 6 C 1.34785 * 119.99703 * 179.97438 * 5 4 3 7 7 O 1.21273 * 120.00038 * 359.97438 * 6 5 4 8 8 C 1.50698 * 119.99756 * 180.02562 * 6 5 4 9 9 H 1.09002 * 109.50253 * 299.92540 * 8 6 5 10 10 C 1.53123 * 109.50549 * 59.99988 * 8 6 5 11 11 C 1.53119 * 109.15966 * 62.28578 * 10 8 6 12 12 C 1.53040 * 109.27846 * 57.65484 * 11 10 8 13 13 H 1.09000 * 109.45987 * 60.83479 * 12 11 10 14 14 C 1.53002 * 109.46487 * 180.80872 * 12 11 10 15 15 N 1.46846 * 109.52111 * 300.82142 * 12 11 10 16 16 C 1.46902 * 110.99885 * 185.83643 * 15 12 11 17 17 C 1.50701 * 109.47296 * 164.02670 * 16 15 12 18 18 O 1.21285 * 119.99845 * 0.02562 * 17 16 15 19 19 N 1.34773 * 120.00408 * 180.02562 * 17 16 15 20 20 C 1.46494 * 120.00505 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.47455 * 179.97438 * 20 19 17 22 22 H 1.08000 * 120.00133 * 359.97438 * 21 20 19 23 23 C 1.37879 * 120.00288 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99799 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99994 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.46904 * 90.00174 * 25 23 21 27 27 H 1.48497 * 109.46961 * 209.99933 * 25 23 21 28 28 H 1.48490 * 109.47280 * 330.00143 * 25 23 21 29 29 C 1.46846 * 111.19923 * 61.74096 * 15 12 11 30 30 H 1.08999 * 109.46688 * 60.00107 * 1 2 3 31 31 H 1.08999 * 109.46755 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47174 * 299.99615 * 1 2 3 33 33 H 1.09000 * 109.47215 * 300.00147 * 3 2 1 34 34 H 1.08998 * 109.46890 * 60.00224 * 3 2 1 35 35 H 1.08997 * 109.47015 * 185.00023 * 4 3 2 36 36 H 1.09000 * 109.47539 * 304.99993 * 4 3 2 37 37 H 0.96996 * 120.00189 * 0.02562 * 5 4 3 38 38 H 1.08998 * 109.52433 * 182.19061 * 10 8 6 39 39 H 1.09004 * 109.52229 * 302.38578 * 10 8 6 40 40 H 1.08996 * 109.50745 * 177.60089 * 11 10 8 41 41 H 1.09004 * 109.50682 * 297.71614 * 11 10 8 42 42 H 1.09001 * 109.47119 * 67.39239 * 14 12 11 43 43 H 1.08999 * 109.47384 * 187.40167 * 14 12 11 44 44 H 1.09002 * 109.46438 * 307.39869 * 14 12 11 45 45 H 1.08994 * 109.47273 * 284.02645 * 16 15 12 46 46 H 1.09001 * 109.47159 * 44.02683 * 16 15 12 47 47 H 0.97009 * 119.99413 * 359.97438 * 19 17 16 48 48 H 1.08996 * 109.47295 * 299.99845 * 20 19 17 49 49 H 1.09001 * 109.47054 * 59.99467 * 20 19 17 50 50 H 0.97000 * 119.99819 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.46286 * 178.23770 * 29 15 12 52 52 H 1.09000 * 109.46092 * 58.27166 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 5.2895 0.3560 -1.4738 7 8 6.1056 0.6831 -0.6385 8 6 5.7434 -0.2819 -2.7614 9 1 5.3020 -1.2745 -2.8511 10 6 5.3004 0.5833 -3.9446 11 6 5.9714 1.9559 -3.8424 12 6 7.4907 1.7748 -3.8135 13 1 7.8163 1.2905 -4.7342 14 6 8.1650 3.1427 -3.6911 15 7 7.8637 0.9409 -2.6638 16 6 9.3238 0.8596 -2.5240 17 6 9.6691 0.3457 -1.1500 18 8 8.7859 0.0736 -0.3647 19 7 10.9594 0.1886 -0.7939 20 6 11.2951 -0.3114 0.5415 21 6 12.7930 -0.3947 0.6849 22 1 13.4311 -0.1046 -0.1367 23 6 13.3488 -0.8412 1.8650 24 7 12.5718 -1.1950 2.8654 25 14 15.2055 -0.9437 2.0430 26 1 15.7235 0.3424 2.5748 27 1 15.5530 -2.0425 2.9794 28 1 15.8158 -1.2125 0.7162 29 6 7.2693 -0.3982 -2.7639 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 1.6886 1.8463 0.8900 35 1 3.9784 2.1765 0.0902 36 1 3.8508 0.5685 0.8427 37 1 3.3240 0.3034 -1.9195 38 1 5.5945 0.1027 -4.8776 39 1 4.2174 0.7047 -3.9217 40 1 5.6934 2.5620 -4.7046 41 1 5.6467 2.4526 -2.9280 42 1 7.9442 3.5705 -2.7132 43 1 9.2432 3.0276 -3.8024 44 1 7.7879 3.8046 -4.4707 45 1 9.7236 0.1805 -3.2769 46 1 9.7576 1.8501 -2.6611 47 1 11.6659 0.4060 -1.4222 48 1 10.8949 0.3671 1.2948 49 1 10.8617 -1.3022 0.6780 50 1 12.9629 -1.5088 3.6958 51 1 7.5889 -1.0019 -1.9145 52 1 7.5959 -0.8722 -3.6895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144239211.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:07 Heat of formation + Delta-G solvation = -142.342499 kcal Electronic energy + Delta-G solvation = -31210.498120 eV Core-core repulsion = 27015.937517 eV Total energy + Delta-G solvation = -4194.560604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47428 -40.27509 -39.15810 -38.53983 -36.02900 -35.54145 -34.68734 -34.24721 -33.27605 -30.72471 -29.96760 -28.43369 -27.70198 -27.07403 -24.95374 -24.31528 -23.64320 -22.84809 -21.59284 -21.11227 -20.19907 -18.88066 -17.71817 -17.60502 -17.52367 -17.38590 -17.14160 -16.68110 -16.47199 -16.14888 -15.92227 -15.77891 -15.56991 -15.41880 -14.92741 -14.77573 -14.54092 -14.20417 -14.12428 -13.90483 -13.72173 -13.62229 -13.29421 -13.07866 -12.91536 -12.83377 -12.76688 -12.72077 -12.65095 -12.54607 -12.37378 -12.21726 -12.12057 -11.75688 -11.47607 -11.41062 -11.11353 -10.78978 -10.69169 -10.42603 -10.35748 -9.87014 -9.68368 -8.97308 -8.28581 -6.45995 1.41007 1.44865 1.56024 2.00057 2.04950 2.31405 2.38227 2.53664 2.81630 3.05362 3.14091 3.72459 3.88222 3.89996 3.97185 4.00959 4.13165 4.18257 4.30461 4.36286 4.41968 4.43229 4.48600 4.49090 4.55009 4.59044 4.64722 4.70697 4.75252 4.85981 4.89618 4.92048 4.93382 5.02050 5.08051 5.10013 5.15050 5.24184 5.26313 5.31735 5.50070 5.52883 5.66636 5.78024 5.88767 6.12876 6.20542 6.40327 6.66733 6.82424 7.09127 7.24335 7.66712 7.73395 8.84017 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012359 B = 0.002551 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2264.993334 B =10974.064691 C =12690.910855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.060 3.940 4 C 0.124 3.876 5 N -0.724 5.724 6 C 0.500 3.500 7 O -0.534 6.534 8 C -0.099 4.099 9 H 0.113 0.887 10 C -0.101 4.101 11 C -0.109 4.109 12 C 0.077 3.923 13 H 0.059 0.941 14 C -0.147 4.147 15 N -0.523 5.523 16 C 0.049 3.951 17 C 0.481 3.519 18 O -0.557 6.557 19 N -0.718 5.718 20 C 0.275 3.725 21 C -0.554 4.554 22 H 0.085 0.915 23 C -0.001 4.001 24 N -0.934 5.934 25 Si 0.989 3.011 26 H -0.270 1.270 27 H -0.283 1.283 28 H -0.253 1.253 29 C 0.076 3.924 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.039 0.961 37 H 0.410 0.590 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.044 0.956 42 H 0.038 0.962 43 H 0.061 0.939 44 H 0.084 0.916 45 H 0.080 0.920 46 H 0.121 0.879 47 H 0.404 0.596 48 H -0.024 1.024 49 H -0.021 1.021 50 H 0.268 0.732 51 H 0.043 0.957 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.986 7.263 -20.821 31.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.016 4.016 4 C 0.000 4.000 5 N -0.380 5.380 6 C 0.286 3.714 7 O -0.408 6.408 8 C -0.121 4.121 9 H 0.131 0.869 10 C -0.139 4.139 11 C -0.147 4.147 12 C -0.030 4.030 13 H 0.077 0.923 14 C -0.204 4.204 15 N -0.248 5.248 16 C -0.082 4.082 17 C 0.267 3.733 18 O -0.434 6.434 19 N -0.371 5.371 20 C 0.151 3.849 21 C -0.592 4.592 22 H 0.103 0.897 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.812 3.188 26 H -0.195 1.195 27 H -0.209 1.209 28 H -0.177 1.177 29 C -0.052 4.052 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.246 0.754 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.103 0.897 45 H 0.098 0.902 46 H 0.138 0.862 47 H 0.239 0.761 48 H -0.006 1.006 49 H -0.003 1.003 50 H 0.077 0.923 51 H 0.061 0.939 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -23.121 7.307 -19.031 30.824 hybrid contribution 1.012 -0.549 0.152 1.162 sum -22.108 6.758 -18.879 29.847 Atomic orbital electron populations 1.22922 0.79249 1.03687 1.01128 1.87918 1.21648 1.28361 1.95674 1.22757 0.90905 0.85138 1.02836 1.21209 0.93636 0.98033 0.87136 1.45815 1.07268 1.64438 1.20458 1.21000 0.82072 0.79072 0.89224 1.90962 1.53301 1.49497 1.47059 1.21445 0.95709 1.01443 0.93485 0.86876 1.21605 1.01418 0.94576 0.96258 1.21656 0.93165 0.97641 1.02243 1.21812 0.96615 0.93880 0.90693 0.92342 1.21931 1.00579 0.95969 1.01962 1.61345 1.07011 1.13803 1.42652 1.21933 0.90697 1.03437 0.92154 1.21544 0.82266 0.78395 0.91054 1.90770 1.47902 1.50371 1.54335 1.46199 1.07344 1.66675 1.16876 1.18368 0.95316 0.91335 0.79838 1.21642 0.91067 1.45569 1.00905 0.89738 1.26167 1.04921 0.94048 0.94893 1.70175 1.38034 1.44071 1.05000 0.85097 0.76985 0.77949 0.78791 1.19540 1.20878 1.17689 1.21823 0.93751 0.89995 0.99640 0.92337 0.89071 0.93342 0.90188 0.90594 0.90948 0.94298 0.75394 0.88765 0.89099 0.88376 0.93740 0.94247 0.92027 0.89675 0.90228 0.86177 0.76105 1.00565 1.00278 0.92315 0.93858 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.42 -7.44 10.65 -148.98 -1.59 -9.03 16 3 C 0.06 0.89 6.07 71.98 0.44 1.33 16 4 C 0.12 2.88 6.06 86.38 0.52 3.40 16 5 N -0.72 -16.25 5.38 -463.07 -2.49 -18.74 16 6 C 0.50 15.20 5.87 87.65 0.51 15.72 16 7 O -0.53 -23.59 13.91 10.44 0.15 -23.45 16 8 C -0.10 -2.25 3.03 -11.49 -0.03 -2.29 16 9 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 10 C -0.10 -1.39 5.43 30.68 0.17 -1.22 16 11 C -0.11 -1.83 5.11 30.65 0.16 -1.67 16 12 C 0.08 1.58 2.44 44.94 0.11 1.69 16 13 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 14 C -0.15 -2.83 8.57 71.98 0.62 -2.21 16 15 N -0.52 -15.75 2.98 -875.66 -2.61 -18.37 16 16 C 0.05 1.52 5.26 85.56 0.45 1.97 16 17 C 0.48 21.86 7.52 87.66 0.66 22.52 16 18 O -0.56 -31.43 13.51 10.40 0.14 -31.29 16 19 N -0.72 -33.69 5.55 -466.80 -2.59 -36.28 16 20 C 0.27 16.46 5.43 85.63 0.46 16.92 16 21 C -0.55 -32.08 9.28 25.60 0.24 -31.85 16 22 H 0.08 4.40 7.60 -2.91 -0.02 4.37 16 23 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 24 N -0.93 -59.67 13.29 21.45 0.28 -59.39 16 25 Si 0.99 44.33 29.54 68.60 2.03 46.36 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 28 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 29 C 0.08 2.24 4.10 86.32 0.35 2.59 16 30 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.16 8.14 -2.39 -0.02 1.15 16 37 H 0.41 6.36 7.86 -92.71 -0.73 5.63 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.09 0.83 7.51 -2.38 -0.02 0.81 16 40 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.04 1.01 7.35 -2.39 -0.02 0.99 16 42 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 43 H 0.06 1.11 6.43 -2.39 -0.02 1.10 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 2.04 8.05 -2.39 -0.02 2.02 16 46 H 0.12 3.23 5.55 -2.39 -0.01 3.22 16 47 H 0.40 15.62 8.32 -92.70 -0.77 14.85 16 48 H -0.02 -1.61 8.14 -2.39 -0.02 -1.63 16 49 H -0.02 -1.40 8.14 -2.39 -0.02 -1.42 16 50 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 51 H 0.04 1.75 6.28 -2.39 -0.01 1.73 16 52 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -91.65 410.30 -0.90 -92.55 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: -0.58 Total: 28.83 kcal Atomic # 6 Polarization: 22.44 SS G_CDS: 6.37 Total: 28.81 kcal Atomic # 7 Polarization: -125.37 SS G_CDS: -7.41 Total: -132.78 kcal Atomic # 8 Polarization: -62.46 SS G_CDS: -1.30 Total: -63.76 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -91.65 -0.90 -92.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144239211.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.795 kcal (2) G-P(sol) polarization free energy of solvation -91.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds