Wall clock time and date at job start Wed Apr 1 2020 00:25:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42894 * 114.00384 * 2 1 4 4 C 1.52993 * 109.47610 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47080 * 64.99869 * 4 3 2 6 6 C 1.34777 * 119.99903 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00267 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99848 * 179.97438 * 6 5 4 9 9 H 1.09006 * 109.50036 * 59.92518 * 8 6 5 10 10 C 1.53120 * 109.53817 * 299.82245 * 8 6 5 11 11 C 1.53116 * 109.15890 * 182.38320 * 10 8 6 12 12 C 1.53031 * 109.27793 * 57.65490 * 11 10 8 13 13 H 1.09003 * 109.46786 * 60.84014 * 12 11 10 14 14 C 1.53003 * 109.46358 * 180.80140 * 12 11 10 15 15 N 1.46847 * 109.52676 * 300.81724 * 12 11 10 16 16 C 1.46899 * 111.00154 * 185.84086 * 15 12 11 17 17 C 1.50703 * 109.47107 * 301.83556 * 16 15 12 18 18 O 1.21278 * 119.99985 * 0.02562 * 17 16 15 19 19 N 1.34779 * 119.99944 * 180.02562 * 17 16 15 20 20 C 1.46499 * 119.99872 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.46992 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00129 * 0.02562 * 21 20 19 23 23 C 1.37880 * 119.99861 * 179.97438 * 21 20 19 24 24 N 1.31510 * 119.99913 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 119.99734 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47432 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46890 * 120.00210 * 25 23 21 28 28 H 1.48501 * 109.47062 * 240.00257 * 25 23 21 29 29 C 1.46848 * 111.19674 * 61.74351 * 15 12 11 30 30 H 1.08996 * 109.46986 * 60.00504 * 1 2 3 31 31 H 1.08998 * 109.47340 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47111 * 300.00521 * 1 2 3 33 33 H 1.09001 * 109.47348 * 59.99289 * 3 2 1 34 34 H 1.09003 * 109.47076 * 300.00004 * 3 2 1 35 35 H 1.09004 * 109.47402 * 304.99606 * 4 3 2 36 36 H 1.08999 * 109.47475 * 184.99794 * 4 3 2 37 37 H 0.97000 * 119.99826 * 359.97438 * 5 4 3 38 38 H 1.08996 * 109.51869 * 302.28851 * 10 8 6 39 39 H 1.08998 * 109.52172 * 62.48038 * 10 8 6 40 40 H 1.08999 * 109.49853 * 177.59548 * 11 10 8 41 41 H 1.09002 * 109.50187 * 297.71164 * 11 10 8 42 42 H 1.08997 * 109.47686 * 180.02562 * 14 12 11 43 43 H 1.09002 * 109.47367 * 300.05403 * 14 12 11 44 44 H 1.09004 * 109.47053 * 60.04880 * 14 12 11 45 45 H 1.09002 * 109.47043 * 181.83576 * 16 15 12 46 46 H 1.09001 * 109.47354 * 61.83515 * 16 15 12 47 47 H 0.97000 * 119.99708 * 359.97438 * 19 17 16 48 48 H 1.09002 * 109.47391 * 59.99686 * 20 19 17 49 49 H 1.09001 * 109.46813 * 299.99742 * 20 19 17 50 50 H 0.97002 * 119.99768 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.46232 * 58.27111 * 29 15 12 52 52 H 1.08997 * 109.46180 * 178.25392 * 29 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 5.2894 0.3550 -1.4733 7 8 6.1055 0.6813 -0.6376 8 6 5.7433 -0.2841 -2.7604 9 1 5.4273 0.3309 -3.6032 10 6 5.1249 -1.6793 -2.8853 11 6 5.6383 -2.3437 -4.1657 12 6 7.1668 -2.4056 -4.1249 13 1 7.4836 -2.9998 -3.2678 14 6 7.6854 -3.0508 -5.4116 15 7 7.7101 -1.0465 -4.0058 16 6 9.1758 -1.0550 -4.1028 17 6 9.7456 -1.9389 -3.0233 18 8 9.0037 -2.5062 -2.2497 19 7 11.0797 -2.0989 -2.9177 20 6 11.6335 -2.9585 -1.8687 21 6 13.1372 -2.9672 -1.9682 22 1 13.6309 -2.3897 -2.7357 23 6 13.8827 -3.7115 -1.0786 24 7 13.2814 -4.4142 -0.1436 25 14 15.7466 -3.7216 -1.2015 26 1 16.1730 -2.8555 -2.3299 27 1 16.3289 -3.2073 0.0642 28 1 16.2196 -5.1095 -1.4360 29 6 7.2688 -0.4056 -2.7604 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8463 -0.8900 35 1 3.8508 0.5685 0.8428 36 1 3.9784 2.1764 0.0902 37 1 3.3239 0.3025 -1.9191 38 1 5.4091 -2.2821 -2.0229 39 1 4.0392 -1.5939 -2.9294 40 1 5.2350 -3.3537 -4.2384 41 1 5.3206 -1.7612 -5.0306 42 1 8.7741 -3.0954 -5.3826 43 1 7.2824 -4.0597 -5.5003 44 1 7.3693 -2.4567 -6.2691 45 1 9.5540 -0.0403 -3.9789 46 1 9.4731 -1.4368 -5.0795 47 1 11.6730 -1.6454 -3.5367 48 1 11.2556 -3.9733 -1.9933 49 1 11.3358 -2.5774 -0.8918 50 1 13.8059 -4.9381 0.4820 51 1 7.5849 -1.0091 -1.9096 52 1 7.7122 0.5874 -2.6861 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144239623.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:15 Heat of formation + Delta-G solvation = -153.052097 kcal Electronic energy + Delta-G solvation = -30758.209244 eV Core-core repulsion = 26563.184237 eV Total energy + Delta-G solvation = -4195.025007 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.74743 -40.75624 -39.08834 -38.67250 -36.16371 -35.81981 -34.70162 -34.37311 -33.38238 -30.87155 -30.03919 -28.52830 -27.78468 -27.05980 -24.97574 -24.27499 -23.57551 -22.96110 -21.72506 -21.20773 -20.72465 -18.90049 -18.29266 -17.74897 -17.51874 -17.42445 -17.10203 -16.77662 -16.61736 -16.23324 -16.15181 -15.96190 -15.77465 -15.28364 -15.26521 -14.99811 -14.77708 -14.26724 -14.09328 -14.03819 -13.82279 -13.67071 -13.37389 -13.15530 -12.96475 -12.84097 -12.81740 -12.79034 -12.69289 -12.60146 -12.25370 -12.14984 -12.00158 -11.70184 -11.59789 -11.47483 -11.31223 -11.20283 -10.83728 -10.81991 -10.60943 -10.14451 -9.81395 -9.13477 -8.32329 -6.49822 1.39939 1.41782 1.55428 1.58745 1.73346 2.11042 2.30593 2.62021 2.78947 2.92708 3.02046 3.61084 3.75456 3.87006 3.92209 4.05569 4.07670 4.15099 4.18896 4.33828 4.41851 4.48390 4.53685 4.54693 4.55271 4.58900 4.61418 4.69882 4.75185 4.82213 4.87837 4.91392 4.93014 5.02584 5.06477 5.07773 5.14866 5.19550 5.23146 5.27667 5.41042 5.44974 5.54836 5.70393 5.82165 5.94188 6.07296 6.19581 6.51517 6.62300 6.89347 7.20190 7.23172 7.49803 8.79969 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015027 B = 0.002213 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.848596 B =12650.945162 C =13663.957729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.056 3.944 4 C 0.116 3.884 5 N -0.709 5.709 6 C 0.515 3.485 7 O -0.591 6.591 8 C -0.088 4.088 9 H 0.137 0.863 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.046 3.954 13 H 0.039 0.961 14 C -0.139 4.139 15 N -0.489 5.489 16 C 0.038 3.962 17 C 0.461 3.539 18 O -0.590 6.590 19 N -0.708 5.708 20 C 0.269 3.731 21 C -0.555 4.555 22 H 0.085 0.915 23 C 0.000 4.000 24 N -0.933 5.933 25 Si 0.988 3.012 26 H -0.251 1.251 27 H -0.280 1.280 28 H -0.277 1.277 29 C 0.065 3.935 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.087 0.913 37 H 0.417 0.583 38 H 0.030 0.970 39 H 0.101 0.899 40 H 0.078 0.922 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.136 0.864 47 H 0.408 0.592 48 H -0.016 1.016 49 H -0.022 1.022 50 H 0.268 0.732 51 H 0.019 0.981 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.381 12.947 -11.587 31.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.020 4.020 4 C -0.008 4.008 5 N -0.362 5.362 6 C 0.302 3.698 7 O -0.471 6.471 8 C -0.109 4.109 9 H 0.155 0.845 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.062 4.062 13 H 0.057 0.943 14 C -0.197 4.197 15 N -0.211 5.211 16 C -0.093 4.093 17 C 0.247 3.753 18 O -0.473 6.473 19 N -0.359 5.359 20 C 0.146 3.854 21 C -0.593 4.593 22 H 0.103 0.897 23 C -0.200 4.200 24 N -0.572 5.572 25 Si 0.811 3.189 26 H -0.174 1.174 27 H -0.206 1.206 28 H -0.203 1.203 29 C -0.064 4.064 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.254 0.746 38 H 0.049 0.951 39 H 0.119 0.881 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.104 0.896 45 H 0.140 0.860 46 H 0.154 0.846 47 H 0.244 0.756 48 H 0.002 0.998 49 H -0.005 1.005 50 H 0.077 0.923 51 H 0.038 0.962 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -26.410 12.785 -10.693 31.229 hybrid contribution 1.312 -0.729 1.296 1.983 sum -25.098 12.055 -9.397 29.386 Atomic orbital electron populations 1.22914 0.79213 1.03657 1.01180 1.87912 1.21660 1.28417 1.95700 1.22809 0.90777 0.85235 1.03226 1.21450 0.94004 0.98737 0.86579 1.45780 1.06826 1.62571 1.21032 1.21015 0.82551 0.77530 0.88712 1.90719 1.54507 1.53307 1.48537 1.21234 0.95324 0.98747 0.95639 0.84549 1.21546 1.01306 0.93110 0.98351 1.21561 0.92406 1.01695 0.97818 1.22098 0.96469 0.88933 0.98747 0.94324 1.21841 1.00156 1.00750 0.96925 1.62523 1.05822 1.19095 1.33689 1.22527 0.88860 1.00368 0.97553 1.22941 0.82491 0.82825 0.87008 1.90577 1.59032 1.51314 1.46337 1.46363 1.07050 1.48439 1.34016 1.18449 0.93594 0.88019 0.85326 1.21672 0.90775 1.30144 1.16703 0.89654 1.26146 1.05481 0.94169 0.94165 1.70162 1.38376 1.30235 1.18382 0.85067 0.76903 0.78334 0.78639 1.17397 1.20561 1.20259 1.21843 0.94742 0.98652 0.91158 0.92372 0.89231 0.93190 0.90015 0.90131 0.93271 0.89541 0.74561 0.95070 0.88076 0.90302 0.88461 0.94163 0.91803 0.89611 0.85998 0.84630 0.75636 0.99813 1.00450 0.92286 0.96217 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.42 -6.13 10.65 -148.98 -1.59 -7.72 16 3 C 0.06 0.60 6.07 71.98 0.44 1.03 16 4 C 0.12 2.04 6.06 86.38 0.52 2.56 16 5 N -0.71 -13.23 5.41 -463.06 -2.50 -15.73 16 6 C 0.51 14.01 7.16 87.66 0.63 14.64 16 7 O -0.59 -22.65 15.98 -3.03 -0.05 -22.70 16 8 C -0.09 -2.07 2.69 -11.48 -0.03 -2.10 16 9 H 0.14 2.26 8.14 -2.38 -0.02 2.24 16 10 C -0.11 -2.27 5.16 30.67 0.16 -2.11 16 11 C -0.10 -1.95 5.37 30.64 0.16 -1.79 16 12 C 0.05 1.27 1.95 44.94 0.09 1.36 16 13 H 0.04 1.52 5.36 -2.39 -0.01 1.51 16 14 C -0.14 -3.21 8.76 71.98 0.63 -2.58 16 15 N -0.49 -13.47 4.69 -875.65 -4.11 -17.57 16 16 C 0.04 1.09 5.30 85.56 0.45 1.54 16 17 C 0.46 19.12 7.09 87.66 0.62 19.75 16 18 O -0.59 -30.10 11.62 -3.02 -0.04 -30.13 16 19 N -0.71 -31.30 5.55 -466.78 -2.59 -33.89 16 20 C 0.27 15.54 5.43 85.63 0.46 16.00 16 21 C -0.56 -31.35 9.28 25.60 0.24 -31.11 16 22 H 0.09 4.34 7.60 -2.91 -0.02 4.32 16 23 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 24 N -0.93 -58.43 13.29 21.45 0.28 -58.14 16 25 Si 0.99 43.67 29.54 68.60 2.03 45.69 16 26 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 27 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 28 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 29 C 0.06 2.06 3.67 86.33 0.32 2.38 16 30 H 0.06 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.42 5.15 7.95 -92.71 -0.74 4.41 16 38 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.10 1.44 7.66 -2.39 -0.02 1.42 16 40 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.04 1.03 6.24 -2.39 -0.01 1.02 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.12 2.93 8.06 -2.39 -0.02 2.92 16 46 H 0.14 3.05 6.32 -2.39 -0.02 3.04 16 47 H 0.41 14.80 8.32 -92.71 -0.77 14.03 16 48 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 49 H -0.02 -1.48 8.14 -2.39 -0.02 -1.50 16 50 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 51 H 0.02 0.85 5.94 -2.39 -0.01 0.84 16 52 H 0.07 2.22 8.04 -2.39 -0.02 2.21 16 Total: -1.00 -86.47 410.44 -2.75 -89.22 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: -0.59 Total: 29.49 kcal Atomic # 6 Polarization: 15.08 SS G_CDS: 6.40 Total: 21.48 kcal Atomic # 7 Polarization: -116.42 SS G_CDS: -8.92 Total: -125.34 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -1.67 Total: -60.54 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.69 kcal Total: -86.47 -2.75 -89.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144239623.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.836 kcal (2) G-P(sol) polarization free energy of solvation -86.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds